Rorug07G0035100
ERF Family

PIN2 TERF1-interacting telomerase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011435
Physical Location & Seq
Forward (+)
2488947 .. 2489909
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0035100.1

Sequence Viewer

Length: 963 bp
ATGGTGAGCTACTCCCCGTGGCTAATGGTTCCCAACCAGCACCACTCTGAAGATCGTCATCGCACTGAATCCTCCATTTCCAGTGGACTTGGTTGGTGGACTTGTTTTGCAAATTCCATTTGTGGAGAAGTTGAGGAAAAACACATCAAACGATCTTTCCTCAACGTTTCCACCAACCAAGTCCACACTCTCGAACTACCCGAGGATGCTTGTGGAAAAAGAAAAACCATATGTGGATTCTCACTAGGTTGGCTAATCCTGTTCGACAATCGCAACTCATCACTCACTCTCCTCAACCCTTTTATCGGCGACCAAATCAACAACCTCCCACGACTCCCTCGAAAGGGCACCGTCCACAAGGCCGTACTGTCTGCAGACCCGTCTTGCAACCCTAACGGCTACAAAGTCCTGGCAATCTTCGGAGACAAACGAGAGCTAATTGGTTACGAACAAGGTAAGCAGCAATGGACTATGTTACAAGATTATGGAAATCACTACGACGATGTTCTTGTCCAAACGGACGAGGCGTTTGTAGCAGTGAGTGAGTTGGGGAAGCTTGTGTGCTGCGATCCACCAGCTTTTAACGAACATGTACCAGCTTCTTTCTTTAAAGGTAAAAAGGTTTATTTAGTGAGCATAAATGGAGACGTATTTATGCTGGTAAGCTTTTCGGGGACGAGCTACTGTTTTTGGCATGAAACCTACGACGACAAGCTTAAAAGGTTTGAGGTTTACAGGTATGATGAAGGACGGTGGTGCCACACCAAAAATCTGCACGAGTTTACGATTTTCTTGGGACAGAACCACTCAGTAGCTGTGCGTAATGCCCCGGATTTTAGACCTGACTGCATATACTTCACTGATGATGATGATGATGAAGGTAAAGTTGAAAACTCGGGCGTGTTTAGTTTGAAAGATGGCGAAGCTGAAAGAATGCAATGGTTTATGCCTAGGTTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000775 GO:0000776 GO:0000781 GO:0000784 GO:0000819 GO:0003674 GO:0003676 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007080 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010389 GO:0010521 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010639 GO:0010833 GO:0010948 GO:0010972 GO:0015630 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031647 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032268 GO:0032269 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0034502 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043388 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051276 GO:0051303 GO:0051310 GO:0051338 GO:0051348 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0070198 GO:0070727 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0098772 GO:0098813 GO:0140014 GO:1900180 GO:1900182 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902570 GO:1902749 GO:1902750 GO:1903047 GO:1903320 GO:1903321 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904742 GO:1904744 GO:1904749 GO:1904751 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

320

Amino Acids

36.68

Weight (kDa)

5.64

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 53 - 302 2.8e-39 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63980 AT1G63980
fragaria_vesca FvH4_5g03190 FvH4_5g03190
malus_domestica MD06G1091000.v1.1 MD14G1111900.v1.1
prunus_persica Prupe.5G106500_v2.0.a1
pyrus_communis pycom06g08660 pycom14g10660
rosa_chinensis RchiOBHm_Chr7g0196591
rosa_laevigata RLG00000004004
rosa_multiflora Rmu_sc0006080.1_g000003
rosa_roxburghii Rroxscaffold_3G00259180
rosa_rugosa Rorug07G0035000 Rorug07G0035100
rosa_samantha Rh7AG159000 Rh7BG161000 Rh7CG167400 Rh7DG160200
rosa_wichuraiana Rw7G013900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 347, 756
AclI AACGTT 1 cut(s) 165
AclWI GGATC 1 cut(s) 563
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 2 cut(s) 366, 594
AfiI CCNNNNNNNGG 3 cut(s) 305, 343, 344
AflIII ACRYGT 1 cut(s) 589
AgsI TTSAA 2 cut(s) 890, 913
AjnI CCWGG 1 cut(s) 408
Alw26I GTCTC 2 cut(s) 417, 639
AlwI GGATC 1 cut(s) 563
AlwNI CAGNNNCTG 1 cut(s) 815
Ama87I CYCGRG 2 cut(s) 200, 895
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 460, 564
ApoI RAATTY 1 cut(s) 112
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AspA2I CCTAGG 1 cut(s) 950
AsuC2I CCSGG 1 cut(s) 830
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 2 cut(s) 200, 895
AvrII CCTAGG 1 cut(s) 950
BaeGI GKGCMC 1 cut(s) 350
BanI GGYRCC 2 cut(s) 347, 756
BauI CACGAG 1 cut(s) 776
BbvI GCAGC 2 cut(s) 472, 551
BccI CCATC 1 cut(s) 911
BceAI ACGGC 2 cut(s) 347, 412
BciT130I CCWGG 1 cut(s) 410
BcnI CCSGG 1 cut(s) 830
BcoDI GTCTC 2 cut(s) 417, 639
BfaI CTAG 2 cut(s) 245, 951
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 2 cut(s) 461, 565
BlnI CCTAGG 1 cut(s) 950
BlsI GCNGC 2 cut(s) 462, 566
Bme1390I CCNGG 2 cut(s) 410, 830
BmeT110I CYCGRG 2 cut(s) 200, 895
BmiI GGNNCC 3 cut(s) 30, 349, 758
BmrFI CCNGG 2 cut(s) 410, 830
BmsI GCATC 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 830
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 4 cut(s) 17, 201, 828, 950
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 343, 344
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 2 cut(s) 470, 944
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 4 cut(s) 17, 201, 828, 950
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 3 cut(s) 305, 343, 344
BseMI GCAATG 2 cut(s) 470, 944
BseMII CTCAG 1 cut(s) 822
BseNI ACTGG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 2 cut(s) 472, 551
BsgI GTGCAG 1 cut(s) 758
BshFI GGCC 1 cut(s) 362
BshNI GGYRCC 2 cut(s) 347, 756
BsiHKCI CYCGRG 2 cut(s) 200, 895
BsiSI CCGG 1 cut(s) 830
BslFI GGGAC 2 cut(s) 688, 810
BslI CCNNNNNNNGG 3 cut(s) 305, 343, 344
BsmAI GTCTC 2 cut(s) 417, 639
BsmBI CGTCTC 1 cut(s) 639
BsmFI GGGAC 2 cut(s) 688, 810
BsmI GAATGC 1 cut(s) 939
BsnI GGCC 1 cut(s) 362
BsoBI CYCGRG 2 cut(s) 200, 895
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 3 cut(s) 52, 152, 568
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 1 cut(s) 821
BspLI GGNNCC 3 cut(s) 30, 349, 758
BspMAI CTGCAG 1 cut(s) 376
BspPI GGATC 1 cut(s) 563
BspT107I GGYRCC 2 cut(s) 347, 756
BsrDI GCAATG 2 cut(s) 470, 944
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 4 cut(s) 17, 201, 828, 950
BssMI GATC 3 cut(s) 52, 152, 568
BssSI CACGAG 1 cut(s) 776
BssT1I CCWWGG 1 cut(s) 950
Bst2BI CACGAG 1 cut(s) 776
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 4 cut(s) 352, 369, 686, 753
BstDEI CTNAG 1 cut(s) 808
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 3 cut(s) 55, 155, 571
BstMAI GTCTC 2 cut(s) 417, 639
BstMBI GATC 3 cut(s) 52, 152, 568
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNI CCWGG 1 cut(s) 410
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 2 cut(s) 408, 828
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 472, 551
BsuRI GGCC 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 4 cut(s) 63, 88, 543, 858
CaiI CAGNNNCTG 1 cut(s) 815
Csp6I GTAC 2 cut(s) 365, 593
CviAII CATG 2 cut(s) 590, 695
CviQI GTAC 2 cut(s) 365, 593
DdeI CTNAG 1 cut(s) 808
DpnI GATC 3 cut(s) 54, 154, 570
DpnII GATC 3 cut(s) 52, 152, 568
DraI TTTAAA 1 cut(s) 610
Eco130I CCWWGG 1 cut(s) 950
Eco57I CTGAAG 1 cut(s) 69
Eco88I CYCGRG 2 cut(s) 200, 895
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 950
ErhI CCWWGG 1 cut(s) 950
Esp3I CGTCTC 1 cut(s) 639
FaeI CATG 2 cut(s) 593, 698
FaqI GGGAC 2 cut(s) 688, 810
FatI CATG 2 cut(s) 589, 694
FauNDI CATATG 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 461, 565
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 461, 565
FspBI CTAG 2 cut(s) 245, 951
GluI GCNGC 2 cut(s) 461, 565
HaeIII GGCC 1 cut(s) 362
HapII CCGG 1 cut(s) 830
Hin1II CATG 2 cut(s) 593, 698
HindIII AAGCTT 3 cut(s) 554, 664, 713
HinfI GANTC 3 cut(s) 68, 237, 333
HpaII CCGG 1 cut(s) 830
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 6 cut(s) 86, 99, 184, 355, 733, 783
Hpy188I TCNGA 2 cut(s) 49, 422
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 6 cut(s) 86, 99, 184, 355, 733, 783
Hpy99I CGWCG 2 cut(s) 503, 710
HpyAV CCTTC 2 cut(s) 740, 872
HpyCH4III ACNGT 4 cut(s) 352, 369, 686, 753
HpyCH4IV ACGT 2 cut(s) 165, 648
HpyCH4V TGCA 6 cut(s) 110, 374, 387, 775, 849, 937
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 1 cut(s) 808
HpySE526I ACGT 2 cut(s) 165, 648
Hsp92II CATG 2 cut(s) 593, 698
Kzo9I GATC 3 cut(s) 52, 152, 568
Lsp1109I GCAGC 2 cut(s) 472, 551
LweI GCATC 1 cut(s) 196
MaeI CTAG 2 cut(s) 245, 951
MaeII ACGT 2 cut(s) 165, 648
MaeIII GTNAC 2 cut(s) 443, 474
MalI GATC 3 cut(s) 54, 154, 570
MboI GATC 3 cut(s) 52, 152, 568
MboII GAAGA 2 cut(s) 62, 409
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 2 cut(s) 112, 438
MlyI GAGTC 1 cut(s) 327
MnlI CCTC 9 cut(s) 82, 127, 170, 196, 302, 335, 348, 517, 721
MseI TTAA 3 cut(s) 582, 609, 717
MspI CCGG 1 cut(s) 830
MspR9I CCNGG 2 cut(s) 410, 830
Mva1269I GAATGC 1 cut(s) 939
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 533
NciI CCSGG 1 cut(s) 830
NdeI CATATG 1 cut(s) 230
NdeII GATC 3 cut(s) 52, 152, 568
NlaIII CATG 2 cut(s) 593, 698
NlaIV GGNNCC 3 cut(s) 30, 349, 758
NspI RCATGY 1 cut(s) 593
PciI ACATGT 1 cut(s) 589
PcsI WCGNNNNNNNCGW 3 cut(s) 198, 337, 524
PctI GAATGC 1 cut(s) 939
PfeI GAWTC 2 cut(s) 68, 237
PkrI GCNGC 2 cut(s) 462, 566
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PscI ACATGT 1 cut(s) 589
Psp1406I AACGTT 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 30, 349, 758
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 815
RsaI GTAC 2 cut(s) 366, 594
RsaNI GTAC 2 cut(s) 365, 593
SaqAI TTAA 3 cut(s) 582, 609, 717
SatI GCNGC 2 cut(s) 461, 565
Sau3AI GATC 3 cut(s) 52, 152, 568
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 2 cut(s) 410, 830
SduI GDGCHC 1 cut(s) 350
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 372
Sse9I AATT 2 cut(s) 112, 438
SspMI CTAG 2 cut(s) 245, 951
StyD4I CCNGG 2 cut(s) 408, 828
StyI CCWWGG 1 cut(s) 950
TaaI ACNGT 4 cut(s) 352, 369, 686, 753
TaiI ACGT 2 cut(s) 168, 651
TaqI TCGA 3 cut(s) 192, 264, 340
TasI AATT 2 cut(s) 112, 438
TfiI GAWTC 2 cut(s) 68, 237
Tru1I TTAA 3 cut(s) 582, 609, 717
Tru9I TTAA 3 cut(s) 582, 609, 717
TscAI CASTG 4 cut(s) 70, 88, 543, 865
TseI GCWGC 2 cut(s) 460, 564
TspDTI ATGAA 3 cut(s) 711, 759, 891
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 4 cut(s) 70, 88, 543, 865
XapI RAATTY 1 cut(s) 112
XceI RCATGY 1 cut(s) 593
XmaJI CCTAGG 1 cut(s) 950
XspI CTAG 2 cut(s) 245, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.