MD06G1091000.v1.1
ERF Family

PIN2 TERF1-interacting telomerase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011435
Physical Location & Seq
Forward (+)
21984529 .. 21988180
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1091000.v1.1.491

Sequence Viewer

Length: 1008 bp
ATGGCGGCCGCCGAAGCCCCCCTCTGTTACGTCGGCGTCGCCAGAAAATCCGCCGCTTTCCGCCTCATGAAACAAATGGGATGGGAAGAAGGAGAAGGTCTTGGGAAAGACAAGCAGGGGATCAAAGGTTATGTCAGAGTAAAAAACAAGCAGGACAATGCTGGTGTTGGTGTAGAGAAGCCTAACCAATGGGCATTCGATACAACTCAATTCGATAGCATCCTCAAAAGATTGAAAGTTCAAGCAGCGCAACCCAGTGATGAAGTTGGTGAGGCGAACGCCACTCAAGAGGAAAGTGATACTGAATTGCCTCATGATGTTAAGGAGCCAGTCAGAAGGGCAGCGTCTCCAGGGATTAATTTCGATCTGGATGGAGAAGTAGAGTCAGACAAGGCATCTGAGATTCAAGTTATTTTCCCTGAAGGAGAAGCATGCAAAGAAATTCCTTCAGATTGGTGGGGCCATAAATATGGGTTTACCCGCGGAGGTTTGCTTGGAGCAGAGATGAAAAGAAGAAAATTAGAAATGTCTGAAAATGGTAATGAGAGAAAAATATTTTACGAGGATGATCAAGTGAATCTTTACAATCTTGTTCAGGATAAATCCACAACTGGAAAGCAAGGACTAGGCATCAGGGACCGGAAAAAGAAAGTAGCTGGTTGCTACTTTGAGGGGAAAAAGACATCATTTAATGATAGCGATGATGAAGATTCTACTGATCTTGGTTCTCCTGTGAAACAAAAAGGAGATGACTCGTTGAAAATGGAAATTAGCAATGAACCAAAAGTGAAGCTAAAAAAGCTTTGTAAACAGCTCGTTCGTCAGGCACCTGGAGAGTCACTGAAGCTGAAAACGTTGAAAGCTTTGATCGACGAACATTTGTCTTCTGTTTTCTCGGACTTTTCTTCAGAGAGAGATGCTCTTGCTTATTTGAGACAAAAACTGGACGGCAGCAAAACTTTCATGCTGGAAGGAAAAAAAGTAAGTCTCAGGTCGAGGAGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000775 GO:0000776 GO:0000781 GO:0000784 GO:0000819 GO:0003674 GO:0003676 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007080 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010389 GO:0010521 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010639 GO:0010833 GO:0010948 GO:0010972 GO:0015630 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031647 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032268 GO:0032269 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0034502 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043388 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051276 GO:0051303 GO:0051310 GO:0051338 GO:0051348 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0070198 GO:0070727 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0098772 GO:0098813 GO:0140014 GO:1900180 GO:1900182 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902570 GO:1902749 GO:1902750 GO:1903047 GO:1903320 GO:1903321 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904742 GO:1904744 GO:1904749 GO:1904751 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

336

Amino Acids

37.38

Weight (kDa)

7.57

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 16 - 59 1.6e-15 G-patch domain
WHD_LYAR PF25879 260 - 333 1.2e-22 LYAR family winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63980 AT1G63980
fragaria_vesca FvH4_5g03190 FvH4_5g03190
malus_domestica MD06G1091000.v1.1 MD14G1111900.v1.1
prunus_persica Prupe.5G106500_v2.0.a1
pyrus_communis pycom06g08660 pycom14g10660
rosa_chinensis RchiOBHm_Chr7g0196591
rosa_laevigata RLG00000004004
rosa_multiflora Rmu_sc0006080.1_g000003
rosa_roxburghii Rroxscaffold_3G00259180
rosa_rugosa Rorug07G0035000 Rorug07G0035100
rosa_samantha Rh7AG159000 Rh7BG161000 Rh7CG167400 Rh7DG160200
rosa_wichuraiana Rw7G013900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 826
AccII CGCG 1 cut(s) 483
AciI CCGC 7 cut(s) 5, 9, 51, 54, 61, 481, 483
AclI AACGTT 1 cut(s) 854
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 441
AcuI CTGAAG 4 cut(s) 432, 441, 863, 891
AcyI GRCGYC 1 cut(s) 36
AgsI TTSAA 5 cut(s) 235, 242, 407, 760, 859
AjnI CCWGG 2 cut(s) 349, 829
AluBI AGCT 6 cut(s) 656, 793, 802, 814, 847, 863
AluI AGCT 6 cut(s) 656, 793, 802, 814, 847, 863
Alw26I GTCTC 3 cut(s) 351, 928, 992
AlwI GGATC 1 cut(s) 128
AoxI GGCC 2 cut(s) 6, 460
ApeKI GCWGC 3 cut(s) 245, 341, 951
ApoI RAATTY 1 cut(s) 441
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AseI ATTAAT 1 cut(s) 357
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 2 cut(s) 460, 637
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 637
BanI GGYRCC 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 876
BbvI GCAGC 3 cut(s) 257, 353, 963
BccI CCATC 2 cut(s) 75, 365
BceAI ACGGC 1 cut(s) 964
BciT130I CCWGG 2 cut(s) 351, 831
BclI TGATCA 1 cut(s) 568
BcoDI GTCTC 3 cut(s) 351, 928, 992
BfaI CTAG 1 cut(s) 626
BisI GCNGC 6 cut(s) 6, 9, 54, 246, 342, 952
BlsI GCNGC 6 cut(s) 7, 10, 55, 247, 343, 953
Bme1390I CCNGG 2 cut(s) 351, 831
Bme18I GGWCC 1 cut(s) 637
BmgT120I GGNCC 2 cut(s) 460, 637
BmiI GGNNCC 4 cut(s) 327, 461, 638, 828
BmrFI CCNGG 2 cut(s) 351, 831
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 4 cut(s) 228, 404, 639, 907
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 876
BplI GAGNNNNNCTC 2 cut(s) 904, 936
BpmI CTGGAG 2 cut(s) 333, 852
BpuEI CTTGAG 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 350, 481
BsaWI WCCGGW 1 cut(s) 639
Bse1I ACTGG 4 cut(s) 255, 329, 616, 948
Bse3DI GCAATG 1 cut(s) 781
BseBI CCWGG 2 cut(s) 351, 831
BseDI CCNNGG 2 cut(s) 350, 481
BseGI GGATG 4 cut(s) 86, 219, 376, 571
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 2 cut(s) 390, 1003
BseNI ACTGG 4 cut(s) 255, 329, 616, 948
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 3 cut(s) 257, 353, 963
Bsh1236I CGCG 1 cut(s) 483
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 8, 462
BshNI GGYRCC 1 cut(s) 826
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 640
BslFI GGGAC 1 cut(s) 650
BsmAI GTCTC 3 cut(s) 351, 928, 992
BsmBI CGTCTC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 650
BsmI GAATGC 1 cut(s) 194
BsnI GGCC 2 cut(s) 8, 462
Bsp143I GATC 5 cut(s) 120, 364, 568, 718, 867
BspACI CCGC 7 cut(s) 5, 9, 51, 54, 61, 481, 483
BspANI GGCC 2 cut(s) 8, 462
BspCNI CTCAG 2 cut(s) 391, 1002
BspFNI CGCG 1 cut(s) 483
BspHI TCATGA 2 cut(s) 66, 313
BspLI GGNNCC 4 cut(s) 327, 461, 638, 828
BspPI GGATC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 826
BsrDI GCAATG 1 cut(s) 781
BsrI ACTGG 4 cut(s) 255, 329, 616, 948
BssECI CCNNGG 2 cut(s) 350, 481
BssMI GATC 5 cut(s) 120, 364, 568, 718, 867
BssNI GRCGYC 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 351, 831
BstACI GRCGYC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 2 cut(s) 399, 989
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 4 cut(s) 86, 219, 376, 571
BstFNI CGCG 1 cut(s) 483
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 5 cut(s) 123, 367, 571, 721, 870
BstMAI GTCTC 3 cut(s) 351, 928, 992
BstMBI GATC 5 cut(s) 120, 364, 568, 718, 867
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 14, 799
BstNI CCWGG 2 cut(s) 351, 831
BstNSI RCATGY 1 cut(s) 435
BstSCI CCNGG 2 cut(s) 349, 829
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 3 cut(s) 257, 353, 963
BstV2I GAAGAC 1 cut(s) 876
BstXI CCANNNNNNTGG 1 cut(s) 470
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 2 cut(s) 8, 462
BtgI CCRYGG 1 cut(s) 481
BtgZI GCGATG 1 cut(s) 714
BtsCI GGATG 4 cut(s) 86, 219, 376, 571
BtsIMutI CAGTG 2 cut(s) 262, 839
Cac8I GCNNGC 1 cut(s) 433
CciI TCATGA 2 cut(s) 66, 313
CciNI GCGGCCGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 460, 637
Cfr42I CCGCGG 1 cut(s) 484
CseI GACGC 2 cut(s) 25, 333
CviAII CATG 4 cut(s) 67, 314, 432, 964
DdeI CTNAG 2 cut(s) 399, 989
DpnI GATC 5 cut(s) 122, 366, 570, 720, 869
DpnII GATC 5 cut(s) 120, 364, 568, 718, 867
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
EciI GGCGGA 2 cut(s) 40, 50
EclXI CGGCCG 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 637
Eco52I CGGCCG 1 cut(s) 6
Eco57I CTGAAG 4 cut(s) 432, 441, 863, 891
EcoRII CCWGG 2 cut(s) 349, 829
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 4 cut(s) 70, 317, 435, 967
FaiI YATR 7 cut(s) 68, 132, 315, 433, 465, 471, 965
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FaqI GGGAC 1 cut(s) 650
FatI CATG 4 cut(s) 66, 313, 431, 963
FauI CCCGC 1 cut(s) 488
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 6 cut(s) 6, 9, 54, 246, 342, 952
FokI GGATG 4 cut(s) 93, 206, 383, 578
Fsp4HI GCNGC 6 cut(s) 6, 9, 54, 246, 342, 952
FspBI CTAG 1 cut(s) 626
GlaI GCGC 1 cut(s) 249
GluI GCNGC 6 cut(s) 6, 9, 54, 246, 342, 952
GsuI CTGGAG 2 cut(s) 333, 852
HaeIII GGCC 2 cut(s) 8, 462
HapII CCGG 1 cut(s) 640
HgaI GACGC 2 cut(s) 25, 333
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 4 cut(s) 70, 317, 435, 967
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 2 cut(s) 800, 861
HinfI GANTC 6 cut(s) 383, 403, 577, 710, 752, 836
HpaII CCGG 1 cut(s) 640
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 2 cut(s) 477, 809
Hpy188I TCNGA 8 cut(s) 137, 335, 388, 400, 451, 532, 898, 910
Hpy188III TCNNGA 5 cut(s) 67, 287, 314, 368, 596
Hpy8I GTNNAC 2 cut(s) 477, 809
Hpy99I CGWCG 3 cut(s) 35, 41, 875
HpyAV CCTTC 6 cut(s) 83, 89, 330, 416, 456, 965
HpyCH4IV ACGT 2 cut(s) 30, 854
HpyCH4V TGCA 1 cut(s) 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 799
HpyF3I CTNAG 2 cut(s) 399, 989
HpySE526I ACGT 2 cut(s) 30, 854
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 4 cut(s) 70, 317, 435, 967
HspAI GCGC 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 568
KspI CCGCGG 1 cut(s) 484
Kzo9I GATC 5 cut(s) 120, 364, 568, 718, 867
LmnI GCTCC 2 cut(s) 325, 497
Lsp1109I GCAGC 3 cut(s) 257, 353, 963
LweI GCATC 4 cut(s) 228, 404, 639, 907
MaeI CTAG 1 cut(s) 626
MaeII ACGT 2 cut(s) 30, 854
MaeIII GTNAC 2 cut(s) 26, 837
MalI GATC 5 cut(s) 122, 366, 570, 720, 869
MboI GATC 5 cut(s) 120, 364, 568, 718, 867
MboII GAAGA 5 cut(s) 98, 525, 719, 876, 897
MluCI AATT 6 cut(s) 209, 305, 358, 441, 518, 768
MlyI GAGTC 3 cut(s) 392, 746, 845
MseI TTAA 3 cut(s) 321, 357, 690
MslI CAYNNNNRTG 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 483
MspI CCGG 1 cut(s) 640
MspR9I CCNGG 2 cut(s) 351, 831
Mva1269I GAATGC 1 cut(s) 194
MvaI CCWGG 2 cut(s) 351, 831
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 2 cut(s) 14, 799
NdeII GATC 5 cut(s) 120, 364, 568, 718, 867
NlaIII CATG 4 cut(s) 70, 317, 435, 967
NlaIV GGNNCC 4 cut(s) 327, 461, 638, 828
NmuCI GTSAC 1 cut(s) 837
NotI GCGGCCGC 1 cut(s) 6
NspI RCATGY 1 cut(s) 435
PaeI GCATGC 1 cut(s) 435
PagI TCATGA 2 cut(s) 66, 313
PctI GAATGC 1 cut(s) 194
PfeI GAWTC 3 cut(s) 403, 577, 710
PkrI GCNGC 6 cut(s) 7, 10, 55, 247, 343, 953
PleI GAGTC 3 cut(s) 391, 746, 844
PpsI GAGTC 3 cut(s) 391, 746, 844
PshBI ATTAAT 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 854
Psp6I CCWGG 2 cut(s) 349, 829
PspGI CCWGG 2 cut(s) 349, 829
PspN4I GGNNCC 4 cut(s) 327, 461, 638, 828
PspPI GGNCC 2 cut(s) 460, 637
RseI CAYNNNNRTG 1 cut(s) 468
SacII CCGCGG 1 cut(s) 484
SaqAI TTAA 3 cut(s) 321, 357, 690
SatI GCNGC 6 cut(s) 6, 9, 54, 246, 342, 952
Sau3AI GATC 5 cut(s) 120, 364, 568, 718, 867
Sau96I GGNCC 2 cut(s) 460, 637
SchI GAGTC 3 cut(s) 392, 746, 845
ScrFI CCNGG 2 cut(s) 351, 831
SfaNI GCATC 4 cut(s) 228, 404, 639, 907
Sfr303I CCGCGG 1 cut(s) 484
SgrBI CCGCGG 1 cut(s) 484
SinI GGWCC 1 cut(s) 637
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
SphI GCATGC 1 cut(s) 435
Sse9I AATT 6 cut(s) 209, 305, 358, 441, 518, 768
SsiI CCGC 7 cut(s) 5, 9, 51, 54, 61, 481, 483
SspI AATATT 1 cut(s) 555
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 2 cut(s) 349, 829
TaiI ACGT 2 cut(s) 33, 857
TaqI TCGA 5 cut(s) 198, 213, 363, 870, 995
TasI AATT 6 cut(s) 209, 305, 358, 441, 518, 768
TauI GCSGC 3 cut(s) 8, 11, 56
TfiI GAWTC 3 cut(s) 403, 577, 710
Tru1I TTAA 3 cut(s) 321, 357, 690
Tru9I TTAA 3 cut(s) 321, 357, 690
TscAI CASTG 2 cut(s) 262, 846
TseFI GTSAC 1 cut(s) 837
TseI GCWGC 3 cut(s) 245, 341, 951
Tsp45I GTSAC 1 cut(s) 837
TspDTI ATGAA 6 cut(s) 83, 276, 521, 720, 792, 952
TspRI CASTG 2 cut(s) 262, 846
VpaK11BI GGWCC 1 cut(s) 637
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 1 cut(s) 441
XceI RCATGY 1 cut(s) 435
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.