Rroxscaffold_3G00259180
ERF Family

PIN2 TERF1-interacting telomerase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011435
Physical Location & Seq
Forward (+)
53587236 .. 53590518
3283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00259180.1

Sequence Viewer

Length: 1101 bp
ATGGCCGCACCGGAAGCCCCTGTCAACTATGTCGGTGTGGCCAAAAAGTCCGCCGCTTTCCGCCTCATGAAACAAATGGGCTGGGAAGAAGGAGAAGGGCTTGGGAAAGACAAGCAGGGGATCAAAGGCTATGTTAGAGTCAAAAACAAGCAGGACACTGCTGGTGTTGGTGTAGAGAAGCCTAACCAGTGGGCATTTGATACAACCCAATTCGATAGCATCCTCAAAAGATTGAAAGTGCAAGCAGCTCAACCTATTATTGATGAAGCTGCTGACAAGAAGAAGAAGAGCACTGAAGTGGAAAGCGAGGATGAATTGCCTAGTGAGGTTAAGGAACCAGTTGTCAAGGCTACTCGACCACAGGGAAGATATAAGAGAAGAGAAAGAGGAAAGCTTGTTGATGCTTATTCTTCCAAGGATCTGGAAGGAATCCTTGTCAAAAGGGCGGCGTCTCCAGAGATAAATTATCTTGATGATGAGTCAGAGAAGGCAACCGAGATTCAAGTTATATGTCCTGAAGAAGCCACGTGTAAAGAGATTCCTCCAAATTGGTGGGGCCATAAATATGGATTCGTCCCTGGGGGTTTGCTTGGTGCAGAATTGAAAAGAAGGAAGTTAGAAAAGTCTCAAGCGAATGAGAGAACTATGTTTTACGAGGATGATCAAGTAAATCTATACAATCTTGTTCAGGACAAATCCACAACTGGAAAGCAAGGACTAGGCATTAAGGACCGGAAAAAGAAAGTTGCCGGTTGCTACTTTGAGGGGAAAAAGACATCATTTAATGATAGTGATGATGAAGGTTCTGCTGATCTTGGCTCTCCCATGGAAGACAAACAAGATGAGTTGTTGGAAGTGGGAAGTGGCAATGAACCAAAACTAAAGCTGAAAAAGCTTTCTAAACAGCTTCTTCGTCAGGCACCTGGAGAGTCAATGAAACTGAAAGCACTGAAAGCTTTGATCGATGAACATTCATCTTCTGTTTTCTCTGACTTTTCTTCAAAAAGAGATGCTGTTGCTTACTTGAGACAAAAGCTGGAAGGTAGCTCAAAGTTTATTGTGGAAGGGAAAAAAGTGAGTCTCAGATCGAAGACGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000775 GO:0000776 GO:0000781 GO:0000784 GO:0000819 GO:0003674 GO:0003676 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007080 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010389 GO:0010521 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010639 GO:0010833 GO:0010948 GO:0010972 GO:0015630 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031647 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032268 GO:0032269 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0034502 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043388 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051276 GO:0051303 GO:0051310 GO:0051338 GO:0051348 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0070198 GO:0070727 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0098772 GO:0098813 GO:0140014 GO:1900180 GO:1900182 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902570 GO:1902749 GO:1902750 GO:1903047 GO:1903320 GO:1903321 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904742 GO:1904744 GO:1904749 GO:1904751 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

366

Amino Acids

40.79

Weight (kDa)

9.0

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 16 - 59 3.1e-15 G-patch domain
WHD_LYAR PF25879 291 - 364 4.1e-23 LYAR family winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63980 AT1G63980
fragaria_vesca FvH4_5g03190 FvH4_5g03190
malus_domestica MD06G1091000.v1.1 MD14G1111900.v1.1
prunus_persica Prupe.5G106500_v2.0.a1
pyrus_communis pycom06g08660 pycom14g10660
rosa_chinensis RchiOBHm_Chr7g0196591
rosa_laevigata RLG00000004004
rosa_multiflora Rmu_sc0006080.1_g000003
rosa_roxburghii Rroxscaffold_3G00259180
rosa_rugosa Rorug07G0035000 Rorug07G0035100
rosa_samantha Rh7AG159000 Rh7BG161000 Rh7CG167400 Rh7DG160200
rosa_wichuraiana Rw7G013900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 919
AciI CCGC 5 cut(s) 6, 51, 54, 61, 446
AclWI GGATC 2 cut(s) 128, 426
AcoI YGGCCR 2 cut(s) 3, 39
AcuI CTGAAG 2 cut(s) 315, 537
AcvI CACGTG 1 cut(s) 528
AcyI GRCGYC 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 527
AgsI TTSAA 4 cut(s) 235, 503, 604, 1002
AjnI CCWGG 2 cut(s) 577, 922
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 9 cut(s) 248, 269, 394, 886, 895, 907, 956, 1036, 1047
AluI AGCT 9 cut(s) 248, 269, 394, 886, 895, 907, 956, 1036, 1047
Alw21I GWGCWC 1 cut(s) 293
Alw26I GTCTC 4 cut(s) 456, 630, 1021, 1085
AlwI GGATC 2 cut(s) 128, 426
AoxI GGCC 4 cut(s) 3, 39, 556, 1095
ApeKI GCWGC 2 cut(s) 245, 269
AspS9I GGNCC 2 cut(s) 556, 730
AvaII GGWCC 1 cut(s) 730
BalI TGGCCA 1 cut(s) 41
BanI GGYRCC 1 cut(s) 919
BbrPI CACGTG 1 cut(s) 528
BbsI GAAGAC 2 cut(s) 837, 1097
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 256, 257
BciT130I CCWGG 2 cut(s) 579, 924
BclI TGATCA 1 cut(s) 661
BcoDI GTCTC 4 cut(s) 456, 630, 1021, 1085
BfaI CTAG 2 cut(s) 321, 719
BisI GCNGC 5 cut(s) 6, 54, 246, 270, 447
BlsI GCNGC 5 cut(s) 7, 55, 247, 271, 448
Bme1390I CCNGG 2 cut(s) 579, 924
Bme18I GGWCC 1 cut(s) 730
BmgT120I GGNCC 2 cut(s) 556, 730
BmiI GGNNCC 3 cut(s) 336, 557, 921
BmrFI CCNGG 2 cut(s) 579, 924
BmsI GCATC 3 cut(s) 228, 391, 1000
BpiI GAAGAC 2 cut(s) 837, 1097
BpmI CTGGAG 2 cut(s) 438, 945
BpuEI CTTGAG 2 cut(s) 612, 1045
Bsa29I ATCGAT 1 cut(s) 963
BsaAI YACGTR 1 cut(s) 528
BsaHI GRCGYC 1 cut(s) 449
BsaJI CCNNGG 4 cut(s) 414, 577, 578, 825
BsaWI WCCGGW 2 cut(s) 10, 732
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 3 cut(s) 187, 338, 709
Bse3DI GCAATG 1 cut(s) 874
BseBI CCWGG 2 cut(s) 579, 924
BseCI ATCGAT 1 cut(s) 963
BseDI CCNNGG 4 cut(s) 414, 577, 578, 825
BseGI GGATG 3 cut(s) 219, 316, 664
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 1 cut(s) 1096
BseNI ACTGG 3 cut(s) 187, 338, 709
BseXI GCAGC 2 cut(s) 256, 257
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 615
BshFI GGCC 4 cut(s) 5, 41, 558, 1097
BshNI GGYRCC 1 cut(s) 919
BshVI ATCGAT 1 cut(s) 963
BsiHKAI GWGCWC 1 cut(s) 293
BsiSI CCGG 3 cut(s) 11, 733, 750
BslFI GGGAC 1 cut(s) 560
BsmAI GTCTC 4 cut(s) 456, 630, 1021, 1085
BsmBI CGTCTC 1 cut(s) 456
BsmFI GGGAC 1 cut(s) 560
BsnI GGCC 4 cut(s) 5, 41, 558, 1097
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 6 cut(s) 120, 418, 661, 811, 960, 1085
Bsp19I CCATGG 1 cut(s) 825
BspACI CCGC 5 cut(s) 6, 51, 54, 61, 446
BspANI GGCC 4 cut(s) 5, 41, 558, 1097
BspCNI CTCAG 1 cut(s) 1095
BspDI ATCGAT 1 cut(s) 963
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 3 cut(s) 336, 557, 921
BspPI GGATC 2 cut(s) 128, 426
BspQI GCTCTTC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 919
BsrDI GCAATG 1 cut(s) 874
BsrFI RCCGGY 1 cut(s) 749
BsrI ACTGG 3 cut(s) 187, 338, 709
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 4 cut(s) 414, 577, 578, 825
BssMI GATC 6 cut(s) 120, 418, 661, 811, 960, 1085
BssNI GRCGYC 1 cut(s) 449
BssT1I CCWWGG 2 cut(s) 414, 825
Bst2UI CCWGG 2 cut(s) 579, 924
Bst6I CTCTTC 2 cut(s) 281, 373
BstACI GRCGYC 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 528
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 1082
BstDSI CCRYGG 1 cut(s) 825
BstF5I GGATG 3 cut(s) 219, 316, 664
BstKTI GATC 6 cut(s) 123, 421, 664, 814, 963, 1088
BstMAI GTCTC 4 cut(s) 456, 630, 1021, 1085
BstMBI GATC 6 cut(s) 120, 418, 661, 811, 960, 1085
BstMWI GCNNNNNNNGC 3 cut(s) 14, 892, 953
BstNI CCWGG 2 cut(s) 579, 924
BstSCI CCNGG 2 cut(s) 577, 922
BstV1I GCAGC 2 cut(s) 256, 257
BstV2I GAAGAC 2 cut(s) 837, 1097
BstX2I RGATCY 1 cut(s) 418
BstXI CCANNNNNNTGG 3 cut(s) 421, 552, 566
BstYI RGATCY 1 cut(s) 418
Bsu15I ATCGAT 1 cut(s) 963
BsuRI GGCC 4 cut(s) 5, 41, 558, 1097
BsuTUI ATCGAT 1 cut(s) 963
BtgI CCRYGG 1 cut(s) 825
BtsCI GGATG 3 cut(s) 219, 316, 664
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 4 cut(s) 156, 194, 291, 947
Cac8I GCNNGC 1 cut(s) 243
CciI TCATGA 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 2 cut(s) 556, 730
ClaI ATCGAT 1 cut(s) 963
CseI GACGC 1 cut(s) 438
CviAII CATG 2 cut(s) 67, 826
DdeI CTNAG 1 cut(s) 1082
DpnI GATC 6 cut(s) 122, 420, 663, 813, 962, 1087
DpnII GATC 6 cut(s) 120, 418, 661, 811, 960, 1085
EaeI YGGCCR 2 cut(s) 3, 39
Eam1104I CTCTTC 2 cut(s) 281, 373
EarI CTCTTC 2 cut(s) 281, 373
EciI GGCGGA 2 cut(s) 40, 50
Eco130I CCWWGG 2 cut(s) 414, 825
Eco47I GGWCC 1 cut(s) 730
Eco57I CTGAAG 2 cut(s) 315, 537
Eco72I CACGTG 1 cut(s) 528
EcoRII CCWGG 2 cut(s) 577, 922
EcoT14I CCWWGG 2 cut(s) 414, 825
ErhI CCWWGG 2 cut(s) 414, 825
Esp3I CGTCTC 1 cut(s) 456
FaeI CATG 2 cut(s) 70, 829
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 560
FatI CATG 2 cut(s) 66, 825
FbaI TGATCA 1 cut(s) 661
Fnu4HI GCNGC 5 cut(s) 6, 54, 246, 270, 447
FokI GGATG 3 cut(s) 206, 323, 671
Fsp4HI GCNGC 5 cut(s) 6, 54, 246, 270, 447
FspBI CTAG 2 cut(s) 321, 719
GluI GCNGC 5 cut(s) 6, 54, 246, 270, 447
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 2 cut(s) 438, 945
HaeIII GGCC 4 cut(s) 5, 41, 558, 1097
HapII CCGG 3 cut(s) 11, 733, 750
HgaI GACGC 1 cut(s) 438
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 2 cut(s) 70, 829
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 3 cut(s) 392, 893, 954
HinfI GANTC 8 cut(s) 138, 429, 479, 499, 538, 570, 929, 1078
HpaII CCGG 3 cut(s) 11, 733, 750
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 484, 991, 1085
Hpy188III TCNNGA 6 cut(s) 67, 422, 455, 470, 515, 689
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 8 cut(s) 83, 89, 419, 481, 603, 794, 1034, 1058
HpyCH4IV ACGT 1 cut(s) 527
HpyCH4V TGCA 2 cut(s) 241, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 892, 953
HpyF3I CTNAG 1 cut(s) 1082
HpySE526I ACGT 1 cut(s) 527
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 2 cut(s) 70, 829
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 6 cut(s) 120, 418, 661, 811, 960, 1085
LguI GCTCTTC 1 cut(s) 281
Lsp1109I GCAGC 2 cut(s) 256, 257
LweI GCATC 3 cut(s) 228, 391, 1000
MaeI CTAG 2 cut(s) 321, 719
MaeII ACGT 1 cut(s) 527
MalI GATC 6 cut(s) 122, 420, 663, 813, 962, 1087
MboI GATC 6 cut(s) 120, 418, 661, 811, 960, 1085
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 293
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 5 cut(s) 209, 314, 463, 547, 599
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 4 cut(s) 147, 488, 938, 1087
MmeI TCCRAC 1 cut(s) 831
MnlI CCTC 8 cut(s) 74, 233, 301, 319, 380, 552, 649, 757
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 3 cut(s) 330, 726, 783
MslI CAYNNNNRTG 2 cut(s) 296, 564
Msp20I TGGCCA 1 cut(s) 41
MspI CCGG 3 cut(s) 11, 733, 750
MspR9I CCNGG 2 cut(s) 579, 924
MvaI CCWGG 2 cut(s) 579, 924
MwoI GCNNNNNNNGC 3 cut(s) 14, 892, 953
NcoI CCATGG 1 cut(s) 825
NdeII GATC 6 cut(s) 120, 418, 661, 811, 960, 1085
NlaIII CATG 2 cut(s) 70, 829
NlaIV GGNNCC 3 cut(s) 336, 557, 921
OliI CACNNNNGTG 1 cut(s) 296
PagI TCATGA 1 cut(s) 66
PasI CCCWGGG 1 cut(s) 578
PciSI GCTCTTC 1 cut(s) 281
PfeI GAWTC 4 cut(s) 429, 499, 538, 570
PkrI GCNGC 5 cut(s) 7, 55, 247, 271, 448
PleI GAGTC 4 cut(s) 146, 487, 937, 1086
PmaCI CACGTG 1 cut(s) 528
PmlI CACGTG 1 cut(s) 528
PpsI GAGTC 4 cut(s) 146, 487, 937, 1086
Ppu21I YACGTR 1 cut(s) 528
Psp6I CCWGG 2 cut(s) 577, 922
PspCI CACGTG 1 cut(s) 528
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 2 cut(s) 577, 922
PspN4I GGNNCC 3 cut(s) 336, 557, 921
PspPI GGNCC 2 cut(s) 556, 730
PsuI RGATCY 1 cut(s) 418
RseI CAYNNNNRTG 2 cut(s) 296, 564
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 3 cut(s) 330, 726, 783
SatI GCNGC 5 cut(s) 6, 54, 246, 270, 447
Sau3AI GATC 6 cut(s) 120, 418, 661, 811, 960, 1085
Sau96I GGNCC 2 cut(s) 556, 730
SchI GAGTC 4 cut(s) 147, 488, 938, 1087
ScrFI CCNGG 2 cut(s) 579, 924
SduI GDGCHC 1 cut(s) 293
SfaNI GCATC 3 cut(s) 228, 391, 1000
SinI GGWCC 1 cut(s) 730
SmiMI CAYNNNNRTG 2 cut(s) 296, 564
SmlI CTYRAG 2 cut(s) 627, 1024
SmoI CTYRAG 2 cut(s) 627, 1024
Sse9I AATT 5 cut(s) 209, 314, 463, 547, 599
SsiI CCGC 5 cut(s) 6, 51, 54, 61, 446
SspMI CTAG 2 cut(s) 321, 719
StyD4I CCNGG 2 cut(s) 577, 922
StyI CCWWGG 2 cut(s) 414, 825
TaiI ACGT 1 cut(s) 530
TaqI TCGA 4 cut(s) 213, 355, 963, 1088
TasI AATT 5 cut(s) 209, 314, 463, 547, 599
TauI GCSGC 3 cut(s) 8, 56, 449
TfiI GAWTC 4 cut(s) 429, 499, 538, 570
Tru1I TTAA 3 cut(s) 330, 726, 783
Tru9I TTAA 3 cut(s) 330, 726, 783
TscAI CASTG 4 cut(s) 163, 194, 298, 954
TseI GCWGC 2 cut(s) 245, 269
TspDTI ATGAA 8 cut(s) 83, 279, 327, 813, 885, 950, 963, 981
TspRI CASTG 4 cut(s) 163, 194, 298, 954
VpaK11BI GGWCC 1 cut(s) 730
XspI CTAG 2 cut(s) 321, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.