Rorug07G0035000
ERF Family

PIN2 TERF1-interacting telomerase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011435
Physical Location & Seq
Forward (+)
2485994 .. 2488748
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0035000.1

Sequence Viewer

Length: 459 bp
ATGTCGACTCCTGCAAGGAAGAGGCTGATGAGAGACTTCAAGAGGTTGCAACAGGACCCACCTGCAGGGATTAGTGGGGCTCCCCAAGACAACAATATAATGCTGTGGAATGCCGTTATATTTGGTCCTGATGATACCCCTTGGGATGGAGGCACGTTTAAGTTGACTCTTCAGTTCACAGAAGATTATCCAAACAAACCACCAACGGTGCGATTTGTTTCTCGAATGTTTCATCCAAATATTTATGCCGATGGAAGTATTTGTTTAGATATTTTGCAAAATCAGTGGAGTCCTATTTATGACGTGGCAGCTATACTCACATCTATCCAGTCACTACTATGTGATCCGAACCCAAATTCTCCTGCAAATTCAGAAGCTGCTCGCATGTTCAGCGAGAACAAGCGAGAGTACAACCGAAGAGTTAGGGAAATCGTGGAACAGAGTTGGACAGCAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000775 GO:0000776 GO:0000781 GO:0000784 GO:0000819 GO:0003674 GO:0003676 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007080 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010389 GO:0010521 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010639 GO:0010833 GO:0010948 GO:0010972 GO:0015630 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031647 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032268 GO:0032269 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0034502 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043388 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051276 GO:0051303 GO:0051310 GO:0051338 GO:0051348 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0070198 GO:0070727 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0098772 GO:0098813 GO:0140014 GO:1900180 GO:1900182 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902570 GO:1902749 GO:1902750 GO:1903047 GO:1903320 GO:1903321 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904742 GO:1904744 GO:1904749 GO:1904751 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

152

Amino Acids

17.35

Weight (kDa)

5.4

Isoelectric Point (pI)

73.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 8 - 144 5.7e-54 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63980 AT1G63980
fragaria_vesca FvH4_5g03190 FvH4_5g03190
malus_domestica MD06G1091000.v1.1 MD14G1111900.v1.1
prunus_persica Prupe.5G106500_v2.0.a1
pyrus_communis pycom06g08660 pycom14g10660
rosa_chinensis RchiOBHm_Chr7g0196591
rosa_laevigata RLG00000004004
rosa_multiflora Rmu_sc0006080.1_g000003
rosa_roxburghii Rroxscaffold_3G00259180
rosa_rugosa Rorug07G0035000 Rorug07G0035100
rosa_samantha Rh7AG159000 Rh7BG161000 Rh7CG167400 Rh7DG160200
rosa_wichuraiana Rw7G013900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 2 cut(s) 355, 367
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 2 cut(s) 65, 146
AgsI TTSAA 1 cut(s) 40
AjiI CACGTC 1 cut(s) 304
AluBI AGCT 2 cut(s) 311, 377
AluI AGCT 2 cut(s) 311, 377
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 338
AlwNI CAGNNNCTG 1 cut(s) 377
ApeKI GCWGC 2 cut(s) 308, 377
ApoI RAATTY 2 cut(s) 355, 367
AspS9I GGNCC 2 cut(s) 55, 125
AvaII GGWCC 2 cut(s) 55, 125
BanII GRGCYC 1 cut(s) 82
BbvI GCAGC 2 cut(s) 320, 364
BccI CCATC 2 cut(s) 140, 245
BceAI ACGGC 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 2 cut(s) 309, 378
BlsI GCNGC 2 cut(s) 310, 379
Bme18I GGWCC 2 cut(s) 55, 125
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 55, 125
BmiI GGNNCC 2 cut(s) 57, 81
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 146
Bse1I ACTGG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 2 cut(s) 151, 232
BseLI CCNNNNNNNGG 2 cut(s) 65, 146
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 2 cut(s) 320, 364
BslI CCNNNNNNNGG 2 cut(s) 65, 146
BsmAI GTCTC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 57, 81
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 3 cut(s) 14, 174, 412
BstC8I GCNNGC 1 cut(s) 382
BstF5I GGATG 2 cut(s) 151, 232
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 1 cut(s) 390
BstNSI RCATGY 1 cut(s) 388
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 320, 364
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 2 cut(s) 151, 232
BtsIMutI CAGTG 1 cut(s) 290
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 382
CaiI CAGNNNCTG 1 cut(s) 377
Cfr13I GGNCC 2 cut(s) 55, 125
Csp6I GTAC 1 cut(s) 409
CspCI CAANNNNNGTGG 2 cut(s) 266, 301
CviAII CATG 1 cut(s) 385
CviJI RGCY 4 cut(s) 25, 80, 311, 377
CviKI_1 RGCY 4 cut(s) 25, 80, 311, 377
CviQI GTAC 1 cut(s) 409
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eam1104I CTCTTC 3 cut(s) 14, 174, 412
EarI CTCTTC 3 cut(s) 14, 174, 412
Eco130I CCWWGG 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 55, 125
Eco57I CTGAAG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 1 cut(s) 388
FaiI YATR 7 cut(s) 98, 119, 246, 300, 314, 340, 386
FatI CATG 1 cut(s) 384
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 309, 378
FokI GGATG 2 cut(s) 158, 219
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 2 cut(s) 309, 378
GluI GCNGC 2 cut(s) 309, 378
Hin1II CATG 1 cut(s) 388
HincII GTYRAC 2 cut(s) 6, 165
HindII GTYRAC 2 cut(s) 6, 165
HinfI GANTC 3 cut(s) 7, 166, 289
Hpy166II GTNNAC 3 cut(s) 6, 165, 177
Hpy188I TCNGA 2 cut(s) 348, 373
Hpy188III TCNNGA 3 cut(s) 40, 128, 222
Hpy8I GTNNAC 3 cut(s) 6, 165, 177
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 2 cut(s) 155, 303
HpyCH4V TGCA 5 cut(s) 14, 49, 65, 277, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 390
HpySE526I ACGT 2 cut(s) 155, 303
Hsp92II CATG 1 cut(s) 388
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 24, 38, 51, 75, 141, 341, 375
Lsp1109I GCAGC 2 cut(s) 320, 364
MaeII ACGT 2 cut(s) 155, 303
MaeIII GTNAC 1 cut(s) 330
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 4 cut(s) 31, 161, 194, 429
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 2 cut(s) 355, 367
MlyI GAGTC 2 cut(s) 160, 298
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 3 cut(s) 15, 36, 143
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 337
Mva1269I GAATGC 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 390
NdeII GATC 1 cut(s) 343
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 2 cut(s) 57, 81
NmuCI GTSAC 1 cut(s) 330
NspI RCATGY 1 cut(s) 388
PaqCI CACCTGC 1 cut(s) 70
PctI GAATGC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 310, 379
PleI GAGTC 2 cut(s) 160, 297
PpsI GAGTC 2 cut(s) 160, 297
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 57, 81
PspPI GGNCC 2 cut(s) 55, 125
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 337
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 309, 378
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 2 cut(s) 55, 125
SbfI CCTGCAGG 1 cut(s) 67
SchI GAGTC 2 cut(s) 160, 298
SdaI CCTGCAGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 82
SetI ASST 6 cut(s) 47, 64, 158, 306, 313, 379
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 2 cut(s) 55, 125
SmiMI CAYNNNNRTG 1 cut(s) 337
Sse8387I CCTGCAGG 1 cut(s) 67
Sse9I AATT 2 cut(s) 355, 367
SspI AATATT 1 cut(s) 241
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 2 cut(s) 158, 306
TaqI TCGA 2 cut(s) 5, 223
TasI AATT 2 cut(s) 355, 367
TatI WGTACW 1 cut(s) 408
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 290
TseFI GTSAC 1 cut(s) 330
TseI GCWGC 2 cut(s) 308, 377
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 221
TspRI CASTG 1 cut(s) 290
VpaK11BI GGWCC 2 cut(s) 55, 125
XapI RAATTY 2 cut(s) 355, 367
XceI RCATGY 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.