AT1G64355

Protein of unknown function (DUF3593)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011911
Physical Location & Seq
Forward (+)
23885982 .. 23887323
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G64355.1

Sequence Viewer

Length: 600 bp
ATGATTCTGATAAACTCTAATTCTCCGACGCTAATCTCAGCCGTTAGATTCGTGGGCTCATCTCCGTTCACCACTCGGGGGCTTTCTCAGTCCACTGTCTCAATCTCTAGAAACAAAAGCTTCTTCTTCCACTTCACCGAGACGAAGGAGAAGAACGCAAGAAGAGATTATTTGAGAGTATCAATCGTGTGTGACGCAGGAGGGATGTTTCCGGTGGATCCATGGGCTCCAACCATTGATTCACAGAGCATAGCATCACAACTCTTCGCTGTATCTCTGTTTCCTTACATTGGCTTTCTCTATTTCCTCACTAAATCCAAATCAGCTCCAAAACTCACACTTTTCGGTTTCTACTTCTTGCTTGCCTTCGTTGGAGCTACAATTCCAGCTGGGATTTATGCTAAGGTGCATTATGGAACATCGTTGTCGAATGTTGATTGGTTACACGGAGGAGCTGAATCACTTCTTGCTCTTACCAATTTGTTTATCGTGTTGGGTCTTAGACAAGCTCTGAGGAAGTCTCAAGATGATGATGATGATAAACTTGGTAATGATGATGAAGTTCCAACAACTCAAGAACAAGGGAAATCTTCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3593

Protein Analysis

199

Amino Acids

21.86

Weight (kDa)

7.83

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3593 PF12159 86 - 171 4.8e-39 Protein of unknown function (DUF3593)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 212, 225
AcuI CTGAAG 1 cut(s) 576
AfiI CCNNNNNNNGG 2 cut(s) 78, 290
AjuI GAANNNNNNNTTGG 2 cut(s) 223, 255
AluBI AGCT 6 cut(s) 120, 326, 377, 389, 455, 509
AluI AGCT 6 cut(s) 120, 326, 377, 389, 455, 509
Alw26I GTCTC 3 cut(s) 103, 134, 525
AlwI GGATC 2 cut(s) 212, 225
Ama87I CYCGRG 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 61, 127
AvaI CYCGRG 1 cut(s) 75
BamHI GGATCC 1 cut(s) 217
BanII GRGCYC 2 cut(s) 59, 229
BceAI ACGGC 1 cut(s) 26
BcoDI GTCTC 3 cut(s) 103, 134, 525
BfaI CTAG 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 75
BmiI GGNNCC 2 cut(s) 219, 228
BmsI GCATC 1 cut(s) 263
BplI GAGNNNNNCTC 2 cut(s) 505, 537
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 2 cut(s) 507, 558
BsaJI CCNNGG 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 290
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 78, 290
BseMII CTCAG 3 cut(s) 51, 101, 503
BseRI GAGGAG 1 cut(s) 465
BseYI CCCAGC 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 78, 290
BsmAI GTCTC 3 cut(s) 103, 134, 525
BsmBI CGTCTC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 59, 229
Bsp143I GATC 1 cut(s) 217
Bsp19I CCATGG 1 cut(s) 221
BspCNI CTCAG 3 cut(s) 50, 100, 504
BspLI GGNNCC 2 cut(s) 219, 228
BspPI GGATC 2 cut(s) 212, 225
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 157, 269
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 5 cut(s) 37, 87, 402, 500, 512
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 3 cut(s) 103, 134, 525
BstMBI GATC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BtgI CCRYGG 1 cut(s) 221
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 93, 600
Cac8I GCNNGC 1 cut(s) 363
CseI GACGC 2 cut(s) 37, 203
CviAII CATG 1 cut(s) 222
DdeI CTNAG 5 cut(s) 37, 87, 402, 500, 512
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 157, 269
EarI CTCTTC 2 cut(s) 157, 269
Eco130I CCWWGG 1 cut(s) 221
Eco24I GRGCYC 2 cut(s) 59, 229
Eco57I CTGAAG 1 cut(s) 576
Eco88I CYCGRG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 221
EcoT38I GRGCYC 2 cut(s) 59, 229
ErhI CCWWGG 1 cut(s) 221
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 1 cut(s) 225
FaiI YATR 4 cut(s) 223, 251, 399, 414
FatI CATG 1 cut(s) 221
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 2 cut(s) 59, 229
FspBI CTAG 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 393
HapII CCGG 1 cut(s) 212
HgaI GACGC 2 cut(s) 37, 203
Hin1II CATG 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 4 cut(s) 4, 48, 239, 458
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 61, 127
Hpy166II GTNNAC 2 cut(s) 69, 93
Hpy188I TCNGA 3 cut(s) 9, 27, 513
Hpy188III TCNNGA 3 cut(s) 108, 524, 575
Hpy8I GTNNAC 2 cut(s) 69, 93
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 139, 376
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 409
HpyF3I CTNAG 5 cut(s) 37, 87, 402, 500, 512
Hsp92II CATG 1 cut(s) 225
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 4 cut(s) 232, 331, 374, 452
LpnPI CCDG 4 cut(s) 183, 225, 375, 399
LweI GCATC 1 cut(s) 263
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 191, 441
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 6 cut(s) 115, 118, 163, 174, 256, 582
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 59, 229
MluCI AATT 3 cut(s) 19, 381, 478
MmeI TCCRAC 4 cut(s) 50, 254, 352, 590
MnlI CCTC 4 cut(s) 194, 317, 443, 507
MroXI GAANNNNTTC 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 1 cut(s) 212
NcoI CCATGG 1 cut(s) 221
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 225
NlaIV GGNNCC 2 cut(s) 219, 228
NmuCI GTSAC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 4 cut(s) 4, 48, 239, 458
PspFI CCCAGC 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 219, 228
PsuI RGATCY 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 389
Sau3AI GATC 1 cut(s) 217
SduI GDGCHC 2 cut(s) 59, 229
SetI ASST 7 cut(s) 122, 328, 379, 391, 408, 457, 511
SfaNI GCATC 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 522, 573
SmoI CTYRAG 2 cut(s) 522, 573
Sse9I AATT 3 cut(s) 19, 381, 478
SspMI CTAG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 428
TasI AATT 3 cut(s) 19, 381, 478
TfiI GAWTC 4 cut(s) 4, 48, 239, 458
TscAI CASTG 2 cut(s) 100, 600
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 573
TspGWI ACGGA 2 cut(s) 54, 462
TspRI CASTG 2 cut(s) 100, 600
XbaI TCTAGA 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.