RchiOBHm_Chr7g0195201

Protein of unknown function (DUF3593)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011911
Physical Location & Seq
Reverse (-)
13123611 .. 13125474
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17456

Sequence Viewer

Length: 597 bp
ATGCAACTCTCTCAGTTTATCTCAATGACTAGTACTTGTATTCAATTTCATTGCAAAGCTTCCAACTTTCTTGTTCCTTCACATTTTCTGGGTTCCTCTTCTTTCTTGCAGAGTCCCCAACCAAACCCACCACTAAGAAACAGAAACCCCAAGAGTTATACGCACAGAAGGATTAGCAATAGAAACAGAAGAGGTGGGGTTGTCTGTGGTGTGCTATTTCCAGTTGATCCATGGGCACCCAACATTGATTCACAGAGCATAGCTTCACAACTCTTTGCAGCTTCTTTGTTTCCCTACCTTGGTTTCTTGTACTTTATCACCAAGTCCAAGACTGCCCCAAAGCTCACTCTTTTTGGGTTTTACTTCTTGCTAGCTTTTGTTGGGGCAACCATCCCTGCAGGAATTTATGCAAAGGTGAACTACGGCACTTCCTTGGCGAATGTTGATTGGTTACATGGTGGGGCTGAGTCACTTCTCACTCTAACCAACATTTTCATTGTGTTGGGGTTGAGAGAAGCTCTGAGGAAAGCTAAAGCAAACGAAGGAATGTCAGATCCTGTTCCAGGGTTGAAAGAGGAGAACAAAACTTCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3593

Protein Analysis

198

Amino Acids

21.79

Weight (kDa)

9.82

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3593 PF12159 89 - 174 1.9e-39 Protein of unknown function (DUF3593)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AclWI GGATC 2 cut(s) 221, 548
AcsI RAATTY 1 cut(s) 402
AfaI GTAC 2 cut(s) 34, 311
AfiI CCNNNNNNNGG 2 cut(s) 299, 563
AgsI TTSAA 2 cut(s) 44, 571
AhlI ACTAGT 1 cut(s) 29
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 7 cut(s) 59, 263, 281, 343, 374, 518, 530
AluI AGCT 7 cut(s) 59, 263, 281, 343, 374, 518, 530
AlwI GGATC 2 cut(s) 221, 548
AlwNI CAGNNNCTG 1 cut(s) 557
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 402
AsuHPI GGTGA 2 cut(s) 310, 427
AsuNHI GCTAGC 1 cut(s) 370
BaeGI GKGCMC 1 cut(s) 238
BanI GGYRCC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 290
BccI CCATC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 439
BciT130I CCWGG 1 cut(s) 564
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 2 cut(s) 30, 371
BfmI CTRYAG 1 cut(s) 396
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 564
BmiI GGNNCC 2 cut(s) 94, 237
BmrFI CCNGG 1 cut(s) 564
BmtI GCTAGC 1 cut(s) 374
BplI GAGNNNNNCTC 2 cut(s) 502, 534
BsaJI CCNNGG 4 cut(s) 230, 298, 432, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 563
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 4 cut(s) 230, 298, 432, 563
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 2 cut(s) 299, 563
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 3 cut(s) 26, 456, 512
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 590
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 1 cut(s) 290
BshNI GGYRCC 1 cut(s) 235
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 299, 563
BsmFI GGGAC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 2 cut(s) 226, 553
Bsp19I CCATGG 1 cut(s) 230
BspCNI CTCAG 3 cut(s) 25, 457, 513
BspLI GGNNCC 2 cut(s) 94, 237
BspMAI CTGCAG 1 cut(s) 400
BspOI GCTAGC 1 cut(s) 374
BspPI GGATC 2 cut(s) 221, 548
BspT107I GGYRCC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 49
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 4 cut(s) 230, 298, 432, 563
BssMI GATC 2 cut(s) 226, 553
BssT1I CCWWGG 3 cut(s) 230, 298, 432
Bst2UI CCWGG 1 cut(s) 564
Bst6I CTCTTC 2 cut(s) 103, 184
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 4 cut(s) 12, 134, 465, 521
BstDSI CCRYGG 1 cut(s) 230
BstENI CCTNNNNNAGG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 390
BstKTI GATC 2 cut(s) 229, 556
BstMBI GATC 2 cut(s) 226, 553
BstNI CCWGG 1 cut(s) 564
BstSCI CCNGG 1 cut(s) 562
BstSFI CTRYAG 1 cut(s) 396
BstSLI GKGCMC 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BtgI CCRYGG 1 cut(s) 230
BtsCI GGATG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 372
CaiI CAGNNNCTG 1 cut(s) 557
Csp6I GTAC 2 cut(s) 33, 310
CviAII CATG 2 cut(s) 231, 455
CviJI RGCY 8 cut(s) 59, 263, 281, 343, 374, 464, 518, 530
CviKI_1 RGCY 8 cut(s) 59, 263, 281, 343, 374, 464, 518, 530
CviQI GTAC 2 cut(s) 33, 310
DdeI CTNAG 4 cut(s) 12, 134, 465, 521
DpnI GATC 2 cut(s) 228, 555
DpnII GATC 2 cut(s) 226, 553
Eam1104I CTCTTC 2 cut(s) 103, 184
EarI CTCTTC 2 cut(s) 103, 184
Eco130I CCWWGG 3 cut(s) 230, 298, 432
EcoNI CCTNNNNNAGG 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 3 cut(s) 230, 298, 432
ErhI CCWWGG 3 cut(s) 230, 298, 432
FaeI CATG 2 cut(s) 234, 458
FaiI YATR 5 cut(s) 159, 232, 260, 408, 456
FaqI GGGAC 1 cut(s) 99
FatI CATG 2 cut(s) 230, 454
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 30, 371
GluI GCNGC 1 cut(s) 279
Hin1II CATG 2 cut(s) 234, 458
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 3 cut(s) 112, 248, 467
HphI GGTGA 2 cut(s) 310, 427
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 2 cut(s) 522, 553
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 3 cut(s) 87, 162, 536
HpyCH4V TGCA 6 cut(s) 4, 54, 109, 278, 398, 410
HpyF3I CTNAG 4 cut(s) 12, 134, 465, 521
Hsp92II CATG 2 cut(s) 234, 458
Kzo9I GATC 2 cut(s) 226, 553
LpnPI CCDG 7 cut(s) 74, 234, 384, 408, 549, 570, 576
Lsp1109I GCAGC 1 cut(s) 290
MaeI CTAG 2 cut(s) 30, 371
MaeIII GTNAC 2 cut(s) 450, 468
MalI GATC 2 cut(s) 228, 555
MboI GATC 2 cut(s) 226, 553
MboII GAAGA 2 cut(s) 90, 201
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 2 cut(s) 44, 402
MlyI GAGTC 2 cut(s) 121, 476
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 4 cut(s) 106, 185, 516, 568
MspR9I CCNGG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 564
NcoI CCATGG 1 cut(s) 230
NdeII GATC 2 cut(s) 226, 553
NheI GCTAGC 1 cut(s) 370
NlaIII CATG 2 cut(s) 234, 458
NlaIV GGNNCC 2 cut(s) 94, 237
NmuCI GTSAC 1 cut(s) 468
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 2 cut(s) 120, 475
PpsI GAGTC 2 cut(s) 120, 475
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 2 cut(s) 94, 237
PstI CTGCAG 1 cut(s) 400
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 2 cut(s) 34, 311
RsaNI GTAC 2 cut(s) 33, 310
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 2 cut(s) 226, 553
SbfI CCTGCAGG 1 cut(s) 400
ScaI AGTACT 1 cut(s) 34
SchI GAGTC 2 cut(s) 121, 476
ScrFI CCNGG 1 cut(s) 564
SdaI CCTGCAGG 1 cut(s) 400
SduI GDGCHC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 396
SpeI ACTAGT 1 cut(s) 29
Sse8387I CCTGCAGG 1 cut(s) 400
Sse9I AATT 2 cut(s) 44, 402
SspMI CTAG 2 cut(s) 30, 371
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 3 cut(s) 230, 298, 432
TasI AATT 2 cut(s) 44, 402
TatI WGTACW 2 cut(s) 32, 309
TfiI GAWTC 1 cut(s) 248
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 2 cut(s) 38, 484
XagI CCTNNNNNAGG 1 cut(s) 561
XapI RAATTY 1 cut(s) 402
XcmI CCANNNNNNNNNTGG 1 cut(s) 228
XspI CTAG 2 cut(s) 30, 371
ZrmI AGTACT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.