RLG00000004138

Protein of unknown function (DUF3593)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011911
Physical Location & Seq
Forward (+)
56523507 .. 56524809
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004138

Sequence Viewer

Length: 573 bp
ATGACTAGTTCTTGTAGTCAGTTTCATTGCAAAGCTCCCAACTTTCTTGTCCCTTCACATTTTCTGGGTTCCTCTTCTTTCTTGCAGAGTCCCCAACCAAACCCACCACTAAGAAACAGAAACCCCAAGAGTCATACACACAGAAGGATTAGCAATAGAAACATAAGAGGTGGGATTGTCTGTGGTGTGCTATTTCCAGTTGATCCATGGGCACCCAACATTGATTCACAGAGCATAGCTTCACAGCTCTTTGCAGCTTCTTTGTTTCCCTACCTTGGTTTCTTGTACTTTATCACCAAGTCCAAGACTGCCCCAAAGCTCACTCTTTTTGGGTTTTACTTCTTGCTAGCTTTTGTTGGGGCAACCATCCCTGCAGGAATTTATGCAAAGGTGAACTACGGCACTTCCTTGGCGAATGTTGATTGGTTACATGGTGGGGCTGAGTCACTTCTCACTTTAACCAACATATTCATTGTGTTGGGGTTGAGAGAAGCTCTGAGGAAAGCTAAAGCAAATGAAGGAACGTCAGATCCTGTTCCAGGGTTGAAAGAGGAGAAGAAAACTTCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3593

Protein Analysis

191

Amino Acids

20.75

Weight (kDa)

9.82

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3593 PF12159 81 - 166 1.8e-39 Protein of unknown function (DUF3593)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AclWI GGATC 2 cut(s) 197, 524
AcsI RAATTY 1 cut(s) 378
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 2 cut(s) 275, 539
AgsI TTSAA 1 cut(s) 547
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 1 cut(s) 538
AloI GAACNNNNNNTCC 2 cut(s) 514, 546
AluBI AGCT 8 cut(s) 35, 239, 247, 257, 319, 350, 494, 506
AluI AGCT 8 cut(s) 35, 239, 247, 257, 319, 350, 494, 506
AlwI GGATC 2 cut(s) 197, 524
AlwNI CAGNNNCTG 1 cut(s) 533
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 286, 403
AsuNHI GCTAGC 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 374
BceAI ACGGC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 540
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 2 cut(s) 6, 347
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 540
BmiI GGNNCC 2 cut(s) 70, 213
BmrFI CCNGG 1 cut(s) 540
BmtI GCTAGC 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 478, 510
BsaJI CCNNGG 4 cut(s) 206, 274, 408, 539
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 539
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 540
BseDI CCNNGG 4 cut(s) 206, 274, 408, 539
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 2 cut(s) 275, 539
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 2 cut(s) 432, 488
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 566
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 211
BslFI GGGAC 2 cut(s) 35, 75
BslI CCNNNNNNNGG 2 cut(s) 275, 539
BsmFI GGGAC 2 cut(s) 35, 75
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 2 cut(s) 202, 529
Bsp19I CCATGG 1 cut(s) 206
BspCNI CTCAG 2 cut(s) 433, 489
BspLI GGNNCC 2 cut(s) 70, 213
BspMAI CTGCAG 1 cut(s) 376
BspOI GCTAGC 1 cut(s) 350
BspPI GGATC 2 cut(s) 197, 524
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 4 cut(s) 206, 274, 408, 539
BssMI GATC 2 cut(s) 202, 529
BssT1I CCWWGG 3 cut(s) 206, 274, 408
Bst2UI CCWGG 1 cut(s) 540
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 110, 441, 497
BstDSI CCRYGG 1 cut(s) 206
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 1 cut(s) 366
BstKTI GATC 2 cut(s) 205, 532
BstMBI GATC 2 cut(s) 202, 529
BstNI CCWGG 1 cut(s) 540
BstSCI CCNGG 1 cut(s) 538
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 348
CaiI CAGNNNCTG 1 cut(s) 533
Csp6I GTAC 1 cut(s) 286
CviAII CATG 2 cut(s) 207, 431
CviJI RGCY 9 cut(s) 35, 239, 247, 257, 319, 350, 440, 494, 506
CviKI_1 RGCY 9 cut(s) 35, 239, 247, 257, 319, 350, 440, 494, 506
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 3 cut(s) 110, 441, 497
DpnI GATC 2 cut(s) 204, 531
DpnII GATC 2 cut(s) 202, 529
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco130I CCWWGG 3 cut(s) 206, 274, 408
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 538
EcoT14I CCWWGG 3 cut(s) 206, 274, 408
ErhI CCWWGG 3 cut(s) 206, 274, 408
FaeI CATG 2 cut(s) 210, 434
FaiI YATR 7 cut(s) 135, 164, 208, 236, 384, 432, 467
FaqI GGGAC 2 cut(s) 35, 75
FatI CATG 2 cut(s) 206, 430
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 2 cut(s) 6, 347
GluI GCNGC 1 cut(s) 255
Hin1II CATG 2 cut(s) 210, 434
HinfI GANTC 4 cut(s) 88, 130, 224, 443
HphI GGTGA 2 cut(s) 286, 403
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 2 cut(s) 498, 529
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 3 cut(s) 63, 138, 512
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 5 cut(s) 30, 85, 254, 374, 386
HpyF3I CTNAG 3 cut(s) 110, 441, 497
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 2 cut(s) 210, 434
Kzo9I GATC 2 cut(s) 202, 529
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 7 cut(s) 50, 210, 360, 384, 525, 546, 552
Lsp1109I GCAGC 1 cut(s) 266
MaeI CTAG 2 cut(s) 6, 347
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 2 cut(s) 426, 444
MalI GATC 2 cut(s) 204, 531
MboI GATC 2 cut(s) 202, 529
MboII GAAGA 2 cut(s) 66, 568
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 378
MlyI GAGTC 3 cut(s) 97, 139, 452
MnlI CCTC 4 cut(s) 82, 161, 492, 544
MseI TTAA 1 cut(s) 458
MspR9I CCNGG 1 cut(s) 540
MvaI CCWGG 1 cut(s) 540
NcoI CCATGG 1 cut(s) 206
NdeII GATC 2 cut(s) 202, 529
NheI GCTAGC 1 cut(s) 346
NlaIII CATG 2 cut(s) 210, 434
NlaIV GGNNCC 2 cut(s) 70, 213
NmuCI GTSAC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 3 cut(s) 96, 138, 451
PpsI GAGTC 3 cut(s) 96, 138, 451
Psp6I CCWGG 1 cut(s) 538
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 2 cut(s) 70, 213
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 202, 529
SbfI CCTGCAGG 1 cut(s) 376
SchI GAGTC 3 cut(s) 97, 139, 452
ScrFI CCNGG 1 cut(s) 540
SdaI CCTGCAGG 1 cut(s) 376
SduI GDGCHC 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 372
SpeI ACTAGT 1 cut(s) 5
Sse8387I CCTGCAGG 1 cut(s) 376
Sse9I AATT 1 cut(s) 378
SspMI CTAG 2 cut(s) 6, 347
StyD4I CCNGG 1 cut(s) 538
StyI CCWWGG 3 cut(s) 206, 274, 408
TaiI ACGT 1 cut(s) 527
TasI AATT 1 cut(s) 378
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TseFI GTSAC 1 cut(s) 444
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 444
TspDTI ATGAA 3 cut(s) 14, 460, 531
XagI CCTNNNNNAGG 1 cut(s) 537
XapI RAATTY 1 cut(s) 378
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XspI CTAG 2 cut(s) 6, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.