Rh7AG148900

Protein of unknown function (DUF3593)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011911
Physical Location & Seq
Reverse (-)
12070247 .. 12074769
4523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG148900.1

Sequence Viewer

Length: 510 bp
ATGATAGCAAAACGCAAAAGCCATCTTCTTCAACCACACGCACTCCAACACAACACTCACTCTCTGCAACTCTCTCAGTTTATCTCAATGACTAGTACTTGTATTCAATTTCATTGCAAAGCTTCCAACTTTCTTGTTCCTTCACATTTTCTGGGTTCCTCTTCTTTCTTGCAGAGTCCCCAACCAAACCCACCACTAAGAAACAGAAACCCCAAGAGTTATACACAGAGAAGGATTAGCAATAGAAACATAAGAGGTGGGGTTGTCTGTGGTGTGCTATTTCCAGTTGATCCATGGGCACCCAACATTGATTCACAGAGCATAGCTTCACAGCTCTTTGCAGCTTCTTTGTTTCCCTACCTTGGTTTCTTGTACTTTATCACCAAGTCCAAGACTGCCCCAAAGCTCACTCTTTTTGGGTTTTACTTCTTGCTAGCTTTTGTTGGGGCAACCAGTGAGTTCTTCATCTTCTTCATCTCCTCTCAATTTACCTTTTTTACTTTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3593

Protein Analysis

169

Amino Acids

19.13

Weight (kDa)

10.25

Isoelectric Point (pI)

58.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3593 PF12159 110 - 152 2.2e-12 Protein of unknown function (DUF3593)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 298
AclWI GGATC 1 cut(s) 284
AfaI GTAC 2 cut(s) 97, 374
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 2 cut(s) 32, 107
AhlI ACTAGT 1 cut(s) 92
AluBI AGCT 6 cut(s) 122, 326, 334, 344, 406, 437
AluI AGCT 6 cut(s) 122, 326, 334, 344, 406, 437
AlwI GGATC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 373
AsuNHI GCTAGC 1 cut(s) 433
BaeGI GKGCMC 1 cut(s) 301
BanI GGYRCC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 353
BccI CCATC 1 cut(s) 30
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 2 cut(s) 93, 434
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
BmcAI AGTACT 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 157, 300
BmtI GCTAGC 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 293, 361
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 2 cut(s) 284, 453
Bse3DI GCAATG 1 cut(s) 112
BseDI CCNNGG 2 cut(s) 293, 361
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 284, 453
BseRI GAGGAG 1 cut(s) 469
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 1 cut(s) 353
BshNI GGYRCC 1 cut(s) 298
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 289
Bsp19I CCATGG 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 157, 300
BspOI GCTAGC 1 cut(s) 437
BspPI GGATC 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 112
BsrI ACTGG 2 cut(s) 284, 453
BssECI CCNNGG 2 cut(s) 293, 361
BssMI GATC 1 cut(s) 289
BssT1I CCWWGG 2 cut(s) 293, 361
Bst6I CTCTTC 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 2 cut(s) 75, 197
BstDSI CCRYGG 1 cut(s) 293
BstKTI GATC 1 cut(s) 292
BstMBI GATC 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 301
BstV1I GCAGC 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 293
BtsIMutI CAGTG 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 435
Csp6I GTAC 2 cut(s) 96, 373
CviAII CATG 1 cut(s) 294
CviJI RGCY 7 cut(s) 21, 122, 326, 334, 344, 406, 437
CviKI_1 RGCY 7 cut(s) 21, 122, 326, 334, 344, 406, 437
CviQI GTAC 2 cut(s) 96, 373
DdeI CTNAG 2 cut(s) 75, 197
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 293, 361
EcoT14I CCWWGG 2 cut(s) 293, 361
ErhI CCWWGG 2 cut(s) 293, 361
FaeI CATG 1 cut(s) 297
FaiI YATR 4 cut(s) 222, 251, 295, 323
FaqI GGGAC 1 cut(s) 162
FatI CATG 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 2 cut(s) 93, 434
GluI GCNGC 1 cut(s) 342
Hin1II CATG 1 cut(s) 297
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 2 cut(s) 175, 311
HphI GGTGA 1 cut(s) 373
Hpy188III TCNNGA 1 cut(s) 507
HpyAV CCTTC 2 cut(s) 150, 225
HpyCH4V TGCA 4 cut(s) 67, 117, 172, 341
HpyF3I CTNAG 2 cut(s) 75, 197
Hsp92II CATG 1 cut(s) 297
Kzo9I GATC 1 cut(s) 289
LpnPI CCDG 3 cut(s) 137, 297, 466
Lsp1109I GCAGC 1 cut(s) 353
MaeI CTAG 2 cut(s) 93, 434
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 6 cut(s) 17, 20, 153, 454, 460, 463
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 2 cut(s) 107, 485
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 2 cut(s) 70, 150
MnlI CCTC 3 cut(s) 169, 248, 490
NcoI CCATGG 1 cut(s) 293
NdeII GATC 1 cut(s) 289
NheI GCTAGC 1 cut(s) 433
NlaIII CATG 1 cut(s) 297
NlaIV GGNNCC 2 cut(s) 157, 300
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 157, 300
RsaI GTAC 2 cut(s) 97, 374
RsaNI GTAC 2 cut(s) 96, 373
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 1 cut(s) 289
ScaI AGTACT 1 cut(s) 97
SchI GAGTC 1 cut(s) 184
SduI GDGCHC 1 cut(s) 301
SetI ASST 9 cut(s) 124, 259, 328, 336, 346, 363, 408, 439, 494
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 2 cut(s) 107, 485
SspMI CTAG 2 cut(s) 93, 434
StyI CCWWGG 2 cut(s) 293, 361
TasI AATT 2 cut(s) 107, 485
TatI WGTACW 2 cut(s) 95, 372
TfiI GAWTC 1 cut(s) 311
TscAI CASTG 1 cut(s) 460
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 101, 454, 463
TspRI CASTG 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 291
XspI CTAG 2 cut(s) 93, 434
ZrmI AGTACT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.