Rorug07G0021700

Protein of unknown function (DUF3593)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011911
Physical Location & Seq
Forward (+)
1579335 .. 1579646
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0021700.1

Sequence Viewer

Length: 312 bp
ATGCTTTTGGTGGTTGAATCTGATTCTGCCATATTGGTCCAGTTGATGCAAATGCCTGATCTCTCCCTCCATCCTCTGGGATCCTTACTCAATGGATGTAAGTTGCTTATGTCTAATATGAACAATGCACAGCTCACCCATGTGTTCCGGGAATGCAACATGCTTGCTGATGCATTAGCAAAGAATAGCATCAATCATGATCTGGGCATCATCACTTTTGAAAGCCCCCCTATCCATGCTGCTCAGGCATACTTAGAGGATATTGCTGGTGTGTCTAGAGTCAGAAGATCTGGCATGTGCTCTCACACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3593

Protein Analysis

103

Amino Acids

11.25

Weight (kDa)

5.86

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 3 - 62 4.3e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 76
AclWI GGATC 2 cut(s) 75, 88
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 2 cut(s) 17, 221
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 302
AlwI GGATC 2 cut(s) 75, 88
ApeKI GCWGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 127
AvaII GGWCC 1 cut(s) 37
BamHI GGATCC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 226
BccI CCATC 1 cut(s) 78
BcnI CCSGG 1 cut(s) 149
BfaI CTAG 1 cut(s) 276
BglII AGATCT 1 cut(s) 287
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 4 cut(s) 36, 160, 198, 216
Bpu10I CCTNAGC 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 70, 101
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 76
BsmI GAATGC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 4 cut(s) 58, 80, 199, 287
BspCNI CTCAG 1 cut(s) 256
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 2 cut(s) 75, 88
BsrI ACTGG 1 cut(s) 40
BssMI GATC 4 cut(s) 58, 80, 199, 287
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 3 cut(s) 243, 253, 309
BstF5I GGATG 2 cut(s) 70, 101
BstKTI GATC 4 cut(s) 61, 83, 202, 290
BstMBI GATC 4 cut(s) 58, 80, 199, 287
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 2 cut(s) 163, 298
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 226
BstX2I RGATCY 2 cut(s) 80, 287
BstYI RGATCY 2 cut(s) 80, 287
BtsCI GGATG 2 cut(s) 70, 101
Cac8I GCNNGC 1 cut(s) 165
CciI TCATGA 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 37
CviAII CATG 5 cut(s) 140, 160, 197, 236, 295
CviJI RGCY 2 cut(s) 133, 225
CviKI_1 RGCY 2 cut(s) 133, 225
DdeI CTNAG 3 cut(s) 243, 253, 309
DpnI GATC 4 cut(s) 60, 82, 201, 289
DpnII GATC 4 cut(s) 58, 80, 199, 287
Eco47I GGWCC 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 175
FaeI CATG 5 cut(s) 143, 163, 200, 239, 298
FaiI YATR 9 cut(s) 32, 110, 119, 141, 161, 198, 237, 250, 296
FatI CATG 5 cut(s) 139, 159, 196, 235, 294
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 2 cut(s) 57, 108
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 276
GluI GCNGC 1 cut(s) 240
HapII CCGG 1 cut(s) 148
Hin1II CATG 5 cut(s) 143, 163, 200, 239, 298
HinfI GANTC 3 cut(s) 17, 23, 279
HpaII CCGG 1 cut(s) 148
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 22, 284
Hpy188III TCNNGA 2 cut(s) 197, 276
HpyCH4V TGCA 4 cut(s) 49, 128, 156, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 3 cut(s) 243, 253, 309
Hsp92II CATG 5 cut(s) 143, 163, 200, 239, 298
Kzo9I GATC 4 cut(s) 58, 80, 199, 287
LpnPI CCDG 8 cut(s) 53, 62, 69, 161, 188, 230, 252, 276
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 4 cut(s) 36, 160, 198, 216
MaeI CTAG 1 cut(s) 276
MalI GATC 4 cut(s) 60, 82, 201, 289
MboI GATC 4 cut(s) 58, 80, 199, 287
MboII GAAGA 1 cut(s) 297
MflI RGATCY 2 cut(s) 80, 287
MhlI GDGCHC 1 cut(s) 302
MlyI GAGTC 1 cut(s) 288
MnlI CCTC 3 cut(s) 77, 84, 250
Mph1103I ATGCAT 1 cut(s) 175
MslI CAYNNNNRTG 1 cut(s) 140
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 149
NdeII GATC 4 cut(s) 58, 80, 199, 287
NlaIII CATG 5 cut(s) 143, 163, 200, 239, 298
NlaIV GGNNCC 1 cut(s) 82
NsiI ATGCAT 1 cut(s) 175
NspI RCATGY 2 cut(s) 163, 298
OliI CACNNNNGTG 1 cut(s) 140
PagI TCATGA 1 cut(s) 196
PctI GAATGC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 17, 23
PflMI CCANNNNNTGG 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 37
PsuI RGATCY 2 cut(s) 80, 287
RseI CAYNNNNRTG 1 cut(s) 140
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 4 cut(s) 58, 80, 199, 287
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 302
SetI ASST 1 cut(s) 135
SfaNI GCATC 4 cut(s) 36, 160, 198, 216
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 140
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 147
TfiI GAWTC 2 cut(s) 17, 23
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 37
XbaI TCTAGA 1 cut(s) 275
XceI RCATGY 2 cut(s) 163, 298
XspI CTAG 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.