Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013539

Physical Location & Seq

Genomic Coordinates Forward (+)

24057063 .. 24059621

Gene Structure 2559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTTCTCTTATCTCTTTTTCTTTGCTCCCAAAACCAAAAGCCGTAAGAAGTTCAATTTCAGCTCCTCAGACACAGACAATAAATACTGAAAAGCTTGAAGATAAATTCGGACGAAAAGGCATAAAATTCTCGGAATCAAACAACATTCCTATGGTAGAGCTTAAGGTCAGAAATGGAAGTTCATTAAAACTGAGTCTATCAGATGCTCATGTACTTTCATATAAGCCAAAGGTATACTGGAAAGACGAGGGATTCGAGGAAGTCCTTTACACAGTTGATGGTGATGAGAGCAGAGGTGGGGTTGGTGTTGTTATCGTAAACGGGGAAGAACCTAAAGGAGGGTCTTCAGTAATCTCAGGATGTGATTGGAGTGTCAAGGATACTGATTCAGACGCCATTGATGCTCTTCAGATCGAACTTAGCTGTACGGCCGGGGTTCTCGACATAACGTATATCGTCTCTCTCTACCCAGTAAGCATGGCTACAGCTCTGGTGGTGAAGAACAATGGTCGCAAACCAGTTACCCTTAAACCGGGGATTATGAGTTACTTGAGGTTCAAGAAACGGAGTGGGGCAGGAATTCAAGGACTAAAGGGATGCTCTTATTGTCCCAACCCGCCTTTGTCATCGCCTTTTGAGCTCTTGTCTCCTTCTGAGGCAATGAAGGCGGAATCTTCGGGGTGGTTCGGGTCGGAAGAAGGGGAAAAGCCGGGGATTTGGGCAGTAGAAGATTCTGTTATTACACTTCTTGAGAAAAAGATGAGTAGAATATATGGTGCTCCTCCGGCTGAGAGATTAAAGGCAGTCTATAACACTCCACCTTCCAAATTTGAAACTATAGATCAGGGGAGAGGATTGTTTTTCAGGATGATAAGGATTGGGTTCGAAGAGATGTATGTGGGATCCCCAGGATCGATGTGGGACAAGTATGGGAAGCAACATTACTTCGTGTGCACAGGTCCAACGTCAATGCTCGTTCCTGTCGATGTAGCCTCCGGAGAGACATGGAGAGGAGCAATGGTAATCGAGCATGATAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

348

Amino Acids

38.01

Weight (kDa)

6.38

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64770 AT1G64770 AT1G64770
fragaria_vesca	FvH4_6g27680
malus_domestica	MD17G1264700.v1.1
prunus_persica	Prupe.3G114100_v2.0.a1
pyrus_communis	pycom17g26450
rosa_chinensis	RchiOBHm_Chr2g0130821
rosa_multiflora	Rmu_sc0031245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113540 Rroxscaffold_2G00113880
rosa_rugosa	Rorug02G0293000
rosa_samantha	Rh2AG344800 Rh2BG353200 Rh2CG331600 Rh2DG371000
rosa_wichuraiana	Rw0G012510 Rw2G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	998
AciI	CCGC	2 cut(s)	620, 671
AclWI	GGATC	3 cut(s)	900, 913, 922
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	4 cut(s)	107, 128, 582, 830
AcuI	CTGAAG	2 cut(s)	333, 395
AcyI	GRCGYC	1 cut(s)	396
AfaI	GTAC	2 cut(s)	216, 430
AfiI	CCNNNNNNNGG	2 cut(s)	341, 535
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	5 cut(s)	57, 101, 562, 587, 836
AjnI	CCWGG	1 cut(s)	910
AluBI	AGCT	6 cut(s)	65, 97, 163, 426, 491, 643
AluI	AGCT	6 cut(s)	65, 97, 163, 426, 491, 643
Alw21I	GWGCWC	3 cut(s)	645, 784, 959
Alw26I	GTCTC	3 cut(s)	466, 654, 998
Alw44I	GTGCAC	1 cut(s)	955
AlwI	GGATC	3 cut(s)	900, 913, 922
Aor13HI	TCCGGA	1 cut(s)	998
AoxI	GGCC	1 cut(s)	432
ApaLI	GTGCAC	1 cut(s)	955
ApoI	RAATTY	4 cut(s)	107, 128, 582, 830
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	1 cut(s)	962
AsuC2I	CCSGG	3 cut(s)	436, 537, 714
AsuHPI	GGTGA	2 cut(s)	296, 511
AsuII	TTCGAA	1 cut(s)	888
AvaII	GGWCC	1 cut(s)	962
BaeGI	GKGCMC	1 cut(s)	959
BamHI	GGATCC	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	645
BarI	GAAGNNNNNNTAC	2 cut(s)	929, 961
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	3 cut(s)	645, 784, 959
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	2 cut(s)	29, 447
BciT130I	CCWGG	1 cut(s)	912
BciVI	GTATCC	1 cut(s)	376
BcnI	CCSGG	3 cut(s)	436, 537, 714
BcoDI	GTCTC	3 cut(s)	466, 654, 998
BfmI	CTRYAG	2 cut(s)	486, 840
BfrI	CTTAAG	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	376
Bme1390I	CCNGG	4 cut(s)	436, 537, 714, 912
Bme18I	GGWCC	1 cut(s)	962
BmgT120I	GGNCC	1 cut(s)	962
BmiI	GGNNCC	1 cut(s)	907
BmrFI	CCNGG	4 cut(s)	436, 537, 714, 912
BmrI	ACTGGG	1 cut(s)	467
BmsI	GCATC	3 cut(s)	196, 394, 590
BmuI	ACTGGG	1 cut(s)	467
BpiI	GAAGAC	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	888
BpuEI	CTTGAG	2 cut(s)	574, 773
BpuMI	CCSGG	3 cut(s)	436, 537, 714
Bsa29I	ATCGAT	1 cut(s)	917
BsaHI	GRCGYC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	435, 536, 713, 910
BsaWI	WCCGGW	1 cut(s)	998
BsaXI	ACNNNNNCTCC	2 cut(s)	1008, 1038
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 535
Bse1I	ACTGG	3 cut(s)	245, 473, 521
Bse3DI	GCAATG	2 cut(s)	669, 1026
BseAI	TCCGGA	1 cut(s)	998
BseBI	CCWGG	1 cut(s)	912
BseCI	ATCGAT	1 cut(s)	917
BseDI	CCNNGG	4 cut(s)	435, 536, 713, 910
BseGI	GGATG	3 cut(s)	368, 605, 876
BseLI	CCNNNNNNNGG	2 cut(s)	341, 535
BseMI	GCAATG	2 cut(s)	669, 1026
BseMII	CTCAG	5 cut(s)	83, 185, 372, 648, 783
BseNI	ACTGG	3 cut(s)	245, 473, 521
BseRI	GAGGAG	3 cut(s)	57, 774, 1029
BseSI	GKGCMC	1 cut(s)	959
BseX3I	CGGCCG	1 cut(s)	432
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	434
BshVI	ATCGAT	1 cut(s)	917
BsiEI	CGRYCG	1 cut(s)	435
BsiHKAI	GWGCWC	3 cut(s)	645, 784, 959
BsiSI	CCGG	5 cut(s)	435, 536, 713, 788, 999
BslFI	GGGAC	2 cut(s)	597, 938
BslI	CCNNNNNNNGG	2 cut(s)	341, 535
BsmAI	GTCTC	3 cut(s)	466, 654, 998
BsmBI	CGTCTC	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	597, 938
BsnI	GGCC	1 cut(s)	434
Bsp119I	TTCGAA	1 cut(s)	888
Bsp1286I	GDGCHC	3 cut(s)	645, 784, 959
Bsp13I	TCCGGA	1 cut(s)	998
Bsp143I	GATC	4 cut(s)	414, 844, 905, 914
BspACI	CCGC	2 cut(s)	620, 671
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	5 cut(s)	82, 186, 371, 649, 784
BspDI	ATCGAT	1 cut(s)	917
BspEI	TCCGGA	1 cut(s)	998
BspLI	GGNNCC	1 cut(s)	907
BspPI	GGATC	3 cut(s)	900, 913, 922
BspQI	GCTCTTC	1 cut(s)	414
BspT104I	TTCGAA	1 cut(s)	888
BspTI	CTTAAG	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	669, 1026
BsrI	ACTGG	3 cut(s)	245, 473, 521
BssECI	CCNNGG	4 cut(s)	435, 536, 713, 910
BssMI	GATC	4 cut(s)	414, 844, 905, 914
BssNAI	GTATAC	1 cut(s)	238
BssNI	GRCGYC	1 cut(s)	396
Bst1107I	GTATAC	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	912
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	2 cut(s)	414, 885
BstACI	GRCGYC	1 cut(s)	396
BstAFI	CTTAAG	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	888
BstDEI	CTNAG	6 cut(s)	69, 194, 358, 422, 657, 792
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	368, 605, 876
BstKTI	GATC	4 cut(s)	417, 847, 908, 917
BstMAI	GTCTC	3 cut(s)	466, 654, 998
BstMBI	GATC	4 cut(s)	414, 844, 905, 914
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	4 cut(s)	404, 640, 668, 788
BstNI	CCWGG	1 cut(s)	912
BstSCI	CCNGG	4 cut(s)	434, 535, 712, 910
BstSFI	CTRYAG	2 cut(s)	486, 840
BstSLI	GKGCMC	1 cut(s)	959
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	905
BstYI	RGATCY	1 cut(s)	905
BstZ17I	GTATAC	1 cut(s)	238
BstZI	CGGCCG	1 cut(s)	432
Bsu15I	ATCGAT	1 cut(s)	917
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	434
BsuTUI	ATCGAT	1 cut(s)	917
BtgZI	GCGATG	1 cut(s)	615
BtsCI	GGATG	3 cut(s)	368, 605, 876
Cfr13I	GGNCC	1 cut(s)	962
ClaI	ATCGAT	1 cut(s)	917
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	215, 429
CviAII	CATG	4 cut(s)	212, 481, 1008, 1034
CviQI	GTAC	2 cut(s)	215, 429
DdeI	CTNAG	6 cut(s)	69, 194, 358, 422, 657, 792
DpnI	GATC	4 cut(s)	416, 846, 907, 916
DpnII	GATC	4 cut(s)	414, 844, 905, 914
EaeI	YGGCCR	1 cut(s)	432
EagI	CGGCCG	1 cut(s)	432
Eam1104I	CTCTTC	2 cut(s)	414, 885
EarI	CTCTTC	2 cut(s)	414, 885
EciI	GGCGGA	1 cut(s)	686
Ecl136II	GAGCTC	1 cut(s)	643
EclXI	CGGCCG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	962
Eco52I	CGGCCG	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	643
Eco57I	CTGAAG	2 cut(s)	333, 395
EcoICRI	GAGCTC	1 cut(s)	643
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	582
EcoRII	CCWGG	1 cut(s)	910
EcoT38I	GRGCYC	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	4 cut(s)	215, 484, 1011, 1037
FaqI	GGGAC	2 cut(s)	597, 938
FatI	CATG	4 cut(s)	211, 480, 1007, 1033
FauI	CCCGC	1 cut(s)	627
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	3 cut(s)	375, 612, 883
FriOI	GRGCYC	1 cut(s)	645
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	5 cut(s)	435, 536, 713, 788, 999
HgaI	GACGC	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	4 cut(s)	215, 484, 1011, 1037
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	6 cut(s)	137, 196, 255, 389, 674, 734
HpaII	CCGG	5 cut(s)	435, 536, 713, 788, 999
HphI	GGTGA	2 cut(s)	296, 511
Hpy166II	GTNNAC	3 cut(s)	238, 322, 957
Hpy188I	TCNGA	9 cut(s)	72, 113, 136, 173, 205, 394, 414, 658, 697
Hpy188III	TCNNGA	6 cut(s)	360, 443, 562, 752, 868, 999
Hpy8I	GTNNAC	3 cut(s)	238, 322, 957
HpyAV	CCTTC	4 cut(s)	661, 663, 695, 834
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	2 cut(s)	452, 968
HpyCH4V	TGCA	1 cut(s)	957
HpyF10VI	GCNNNNNNNGC	4 cut(s)	404, 640, 668, 788
HpyF3I	CTNAG	6 cut(s)	69, 194, 358, 422, 657, 792
HpySE526I	ACGT	2 cut(s)	452, 968
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	4 cut(s)	215, 484, 1011, 1037
Kpn2I	TCCGGA	1 cut(s)	998
Kzo9I	GATC	4 cut(s)	414, 844, 905, 914
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	4 cut(s)	33, 70, 787, 1016
LweI	GCATC	3 cut(s)	196, 394, 590
MaeII	ACGT	2 cut(s)	452, 968
MaeIII	GTNAC	2 cut(s)	523, 548
MalI	GATC	4 cut(s)	416, 846, 907, 916
MboI	GATC	4 cut(s)	414, 844, 905, 914
MboII	GAAGA	9 cut(s)	113, 339, 341, 401, 514, 669, 710, 743, 902
MflI	RGATCY	1 cut(s)	905
MhlI	GDGCHC	3 cut(s)	645, 784, 959
MluCI	AATT	6 cut(s)	57, 107, 128, 582, 830, 1039
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	2 cut(s)	675, 989
MroI	TCCGGA	1 cut(s)	998
MseI	TTAA	4 cut(s)	165, 188, 531, 800
MslI	CAYNNNNRTG	1 cut(s)	152
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	5 cut(s)	435, 536, 713, 788, 999
MspR9I	CCNGG	4 cut(s)	436, 537, 714, 912
MvaI	CCWGG	1 cut(s)	912
MwoI	GCNNNNNNNGC	4 cut(s)	404, 640, 668, 788
NciI	CCSGG	3 cut(s)	436, 537, 714
NdeII	GATC	4 cut(s)	414, 844, 905, 914
NlaIII	CATG	4 cut(s)	215, 484, 1011, 1037
NlaIV	GGNNCC	1 cut(s)	907
NspV	TTCGAA	1 cut(s)	888
PciSI	GCTCTTC	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 984
PfeI	GAWTC	5 cut(s)	137, 255, 389, 674, 734
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	910
PspGI	CCWGG	1 cut(s)	910
PspN4I	GGNNCC	1 cut(s)	907
PspPI	GGNCC	1 cut(s)	962
PsuI	RGATCY	1 cut(s)	905
RsaI	GTAC	2 cut(s)	216, 430
RsaNI	GTAC	2 cut(s)	215, 429
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	645
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	4 cut(s)	165, 188, 531, 800
Sau3AI	GATC	4 cut(s)	414, 844, 905, 914
Sau96I	GGNCC	1 cut(s)	962
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	4 cut(s)	436, 537, 714, 912
SduI	GDGCHC	3 cut(s)	645, 784, 959
SfaNI	GCATC	3 cut(s)	196, 394, 590
SfcI	CTRYAG	2 cut(s)	486, 840
SfuI	TTCGAA	1 cut(s)	888
SinI	GGWCC	1 cut(s)	962
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	3 cut(s)	164, 553, 752
SmoI	CTYRAG	3 cut(s)	164, 553, 752
Sse9I	AATT	6 cut(s)	57, 107, 128, 582, 830, 1039
SsiI	CCGC	2 cut(s)	620, 671
SstI	GAGCTC	1 cut(s)	645
StyD4I	CCNGG	4 cut(s)	434, 535, 712, 910
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	2 cut(s)	455, 971
TaqI	TCGA	7 cut(s)	258, 417, 444, 888, 917, 987, 1029
TasI	AATT	6 cut(s)	57, 107, 128, 582, 830, 1039
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	5 cut(s)	137, 255, 389, 674, 734
Tru1I	TTAA	4 cut(s)	165, 188, 531, 800
Tru9I	TTAA	4 cut(s)	165, 188, 531, 800
TspDTI	ATGAA	3 cut(s)	174, 210, 680
TspGWI	ACGGA	1 cut(s)	583
Vha464I	CTTAAG	1 cut(s)	164
VneI	GTGCAC	1 cut(s)	955
VpaK11BI	GGWCC	1 cut(s)	962
XagI	CCTNNNNNAGG	1 cut(s)	339
XapI	RAATTY	4 cut(s)	107, 128, 582, 830
XcmI	CCANNNNNNNNNTGG	2 cut(s)	237, 918
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.