Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013539

Physical Location & Seq

Genomic Coordinates Forward (+)

32516770 .. 32518637

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1264700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCTTCTCTTCTTTCCTTCTCCGTTCCCACTTCAAAGATGATAAGAGCTTCTTCAACAGCTGCTTCTGCACCGGCAATTTCGGTTCCAGAGACCCTCAGTGACAAATTTGGCAGAAAAGGCATCAAGTTTTCGGAGTCGGACAGCATCCCAATGGTTGAGCTCACGGTCAGAAATGGAAGTTCATTAAAGCTTCAAATACCCAATGCCCATGTGACTTCATACAAGCCAAAGGTGTACTGGAATGACGACGGCTTTCAGGAGGTTCTGTACACCATTCCAGGCAATGAGACGGATTCTATCAAAGCCAAGGGGGGAATTGGTTTGGTTTTGAATGATGCATCGGAAGCAGGCTCTAAAGGCTCAATTCTTTCCGCTTCCGAATGGACTGTTAAAGATGTTGATTCCGATGCCATCGATGCTCTCCAGGTTGAGCTAAGCAGCACTAGTGGAACACTTGATATAACATATGTTGTGACACTCTATCCAGTAAGCATGGCAACGGCTGTGATTGTGAAAAACAAAGGCCGGAAGCCGGTGACTATGACGAATGCAATACTCAGCCACTTCAAATTTAAACGACGAGGCGGAGCAGCAATCCAAGGTCTCAAGGGATGTGGCTACACTGCGCACCCTCCACCGTCTTCTCCTTTCGAAATTATGTCTCCCGGTGAAGCAATGAAAGCTGACACTCCAGGGTGGTTCTCTTTCGGTTCTGAGCCTCAAGAAAAACCAGGTTCCTGGAGCCGCCAGGATGTGCCGTACACCATTTTGAAAAACAAGCTCAGCAGAGTCTATGCTGCGCCTCCTCAAGAGAGACTGAAGCCCGTTTATAACACCCCACCTTCAAAATATGAAACACTGGATAAGGGGCGTGATTTGTTCTACAGGGTGATACGCATGGGATTTGAGGATATATATTTGTCAAGTCCTGGTTCTTTCTATGAGAAATATGGCAGTAAGGAGTACTTTATATGCACTGGACCAGCTTCATTGCTCGTTCCTGTGGTTATTAACCCTGCTGAGGAATGGAGAGGAGCTCAAGTTATTGAGCACGATAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

356

Amino Acids

38.68

Weight (kDa)

8.27

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64770 AT1G64770 AT1G64770
fragaria_vesca	FvH4_6g27680
malus_domestica	MD17G1264700.v1.1
prunus_persica	Prupe.3G114100_v2.0.a1
pyrus_communis	pycom17g26450
rosa_chinensis	RchiOBHm_Chr2g0130821
rosa_multiflora	Rmu_sc0031245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113540 Rroxscaffold_2G00113880
rosa_rugosa	Rorug02G0293000
rosa_samantha	Rh2AG344800 Rh2BG353200 Rh2CG331600 Rh2DG371000
rosa_wichuraiana	Rw0G012510 Rw2G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	834
Acc16I	TGCGCA	1 cut(s)	630
AciI	CCGC	3 cut(s)	375, 588, 748
AcsI	RAATTY	2 cut(s)	107, 572
AcuI	CTGAAG	1 cut(s)	842
AfaI	GTAC	4 cut(s)	239, 272, 764, 968
AfiI	CCNNNNNNNGG	2 cut(s)	535, 1024
AgsI	TTSAA	7 cut(s)	36, 57, 197, 334, 571, 775, 849
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	7 cut(s)	280, 426, 694, 733, 740, 750, 931
AluBI	AGCT	9 cut(s)	50, 62, 163, 193, 436, 686, 784, 989, 1040
AluI	AGCT	9 cut(s)	50, 62, 163, 193, 436, 686, 784, 989, 1040
Alw21I	GWGCWC	3 cut(s)	165, 1042, 1056
Alw26I	GTCTC	5 cut(s)	86, 284, 611, 669, 811
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	4 cut(s)	62, 441, 593, 800
ApoI	RAATTY	2 cut(s)	107, 572
AspLEI	GCGC	2 cut(s)	631, 805
AspS9I	GGNCC	1 cut(s)	983
AsuC2I	CCSGG	1 cut(s)	669
AsuHPI	GGTGA	3 cut(s)	550, 683, 904
AsuII	TTCGAA	1 cut(s)	654
AvaII	GGWCC	1 cut(s)	983
BanII	GRGCYC	2 cut(s)	165, 1042
BbsI	GAAGAC	1 cut(s)	636
Bbv12I	GWGCWC	3 cut(s)	165, 1042, 1056
BbvCI	CCTCAGC	1 cut(s)	1023
BbvI	GCAGC	4 cut(s)	49, 453, 605, 787
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	3 cut(s)	268, 519, 745
BciT130I	CCWGG	7 cut(s)	282, 428, 696, 735, 742, 752, 933
BcnI	CCSGG	1 cut(s)	669
BcoDI	GTCTC	5 cut(s)	86, 284, 611, 669, 811
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	886
BisI	GCNGC	5 cut(s)	63, 442, 594, 748, 801
BlpI	GCTNAGC	2 cut(s)	437, 785
BlsI	GCNGC	5 cut(s)	64, 443, 595, 749, 802
BmcAI	AGTACT	1 cut(s)	968
Bme1390I	CCNGG	8 cut(s)	282, 428, 669, 696, 735, 742, 752, 933
Bme18I	GGWCC	1 cut(s)	983
BmgT120I	GGNCC	1 cut(s)	983
BmiI	GGNNCC	3 cut(s)	87, 739, 746
BmrFI	CCNGG	8 cut(s)	282, 428, 669, 696, 735, 742, 752, 933
BmsI	GCATC	6 cut(s)	132, 156, 328, 350, 400, 409
BpiI	GAAGAC	1 cut(s)	636
BplI	GAGNNNNNCTC	2 cut(s)	1024, 1056
BpmI	CTGGAG	3 cut(s)	410, 678, 763
Bpu10I	CCTNAGC	1 cut(s)	1023
Bpu1102I	GCTNAGC	2 cut(s)	437, 785
Bpu14I	TTCGAA	1 cut(s)	654
BpuEI	CTTGAG	4 cut(s)	593, 708, 795, 1026
BpuMI	CCSGG	1 cut(s)	669
Bsa29I	ATCGAT	1 cut(s)	417
BsaI	GGTCTC	2 cut(s)	86, 611
BsaJI	CCNNGG	3 cut(s)	309, 601, 695
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 1029, 1059
Bsc4I	CCNNNNNNNGG	2 cut(s)	535, 1024
Bse118I	RCCGGY	2 cut(s)	73, 535
Bse1I	ACTGG	4 cut(s)	245, 488, 867, 985
Bse3DI	GCAATG	3 cut(s)	292, 684, 992
BseBI	CCWGG	7 cut(s)	282, 428, 696, 735, 742, 752, 933
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	3 cut(s)	309, 601, 695
BseGI	GGATG	3 cut(s)	147, 620, 760
BseLI	CCNNNNNNNGG	2 cut(s)	535, 1024
BseMI	GCAATG	3 cut(s)	292, 684, 992
BseMII	CTCAG	5 cut(s)	112, 574, 708, 799, 1014
BseNI	ACTGG	4 cut(s)	245, 488, 867, 985
BseRI	GAGGAG	2 cut(s)	798, 1050
BseXI	GCAGC	4 cut(s)	49, 453, 605, 787
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	528
BshVI	ATCGAT	1 cut(s)	417
BsiHKAI	GWGCWC	3 cut(s)	165, 1042, 1056
BsiSI	CCGG	4 cut(s)	74, 529, 536, 669
BslI	CCNNNNNNNGG	2 cut(s)	535, 1024
BsmAI	GTCTC	5 cut(s)	86, 284, 611, 669, 811
BsmBI	CGTCTC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	1 cut(s)	528
Bso31I	GGTCTC	2 cut(s)	86, 611
Bsp119I	TTCGAA	1 cut(s)	654
Bsp1286I	GDGCHC	3 cut(s)	165, 1042, 1056
Bsp1407I	TGTACA	1 cut(s)	270
Bsp1720I	GCTNAGC	2 cut(s)	437, 785
BspACI	CCGC	3 cut(s)	375, 588, 748
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	5 cut(s)	111, 573, 709, 798, 1015
BspDI	ATCGAT	1 cut(s)	417
BspLI	GGNNCC	3 cut(s)	87, 739, 746
BspT104I	TTCGAA	1 cut(s)	654
BspTNI	GGTCTC	2 cut(s)	86, 611
BsrDI	GCAATG	3 cut(s)	292, 684, 992
BsrFI	RCCGGY	2 cut(s)	73, 535
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	4 cut(s)	245, 488, 867, 985
BssAI	RCCGGY	2 cut(s)	73, 535
BssECI	CCNNGG	3 cut(s)	309, 601, 695
BssT1I	CCWWGG	2 cut(s)	309, 601
Bst2UI	CCWGG	7 cut(s)	282, 428, 696, 735, 742, 752, 933
Bst4CI	ACNGT	3 cut(s)	169, 391, 642
Bst6I	CTCTTC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	654
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	6 cut(s)	98, 437, 560, 717, 785, 1023
BstF5I	GGATG	3 cut(s)	147, 620, 760
BstHHI	GCGC	2 cut(s)	631, 805
BstMAI	GTCTC	5 cut(s)	86, 284, 611, 669, 811
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 120, 347, 360, 419, 683
BstNI	CCWGG	7 cut(s)	282, 428, 696, 735, 742, 752, 933
BstSCI	CCNGG	8 cut(s)	280, 426, 667, 694, 733, 740, 750, 931
BstSFI	CTRYAG	1 cut(s)	886
BstV1I	GCAGC	4 cut(s)	49, 453, 605, 787
BstV2I	GAAGAC	1 cut(s)	636
BstXI	CCANNNNNNTGG	1 cut(s)	741
Bsu15I	ATCGAT	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	528
BsuTUI	ATCGAT	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	147, 620, 760
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	4 cut(s)	106, 624, 860, 978
Cac8I	GCNNGC	1 cut(s)	352
CfoI	GCGC	2 cut(s)	631, 805
Cfr10I	RCCGGY	2 cut(s)	73, 535
Cfr13I	GGNCC	1 cut(s)	983
ClaI	ATCGAT	1 cut(s)	417
CsiI	ACCWGGT	1 cut(s)	733
Csp6I	GTAC	4 cut(s)	238, 271, 763, 967
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviAII	CATG	3 cut(s)	212, 496, 901
CviQI	GTAC	4 cut(s)	238, 271, 763, 967
DdeI	CTNAG	6 cut(s)	98, 437, 560, 717, 785, 1023
DraI	TTTAAA	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	603
Ecl136II	GAGCTC	2 cut(s)	163, 1040
Eco130I	CCWWGG	2 cut(s)	309, 601
Eco24I	GRGCYC	2 cut(s)	165, 1042
Eco31I	GGTCTC	2 cut(s)	86, 611
Eco47I	GGWCC	1 cut(s)	983
Eco53kI	GAGCTC	2 cut(s)	163, 1040
Eco57I	CTGAAG	1 cut(s)	842
EcoICRI	GAGCTC	2 cut(s)	163, 1040
EcoRII	CCWGG	7 cut(s)	280, 426, 694, 733, 740, 750, 931
EcoT14I	CCWWGG	2 cut(s)	309, 601
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	2 cut(s)	165, 1042
ErhI	CCWWGG	2 cut(s)	309, 601
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	3 cut(s)	215, 499, 904
FalI	AAGNNNNNCTT	4 cut(s)	37, 69, 953, 985
FatI	CATG	3 cut(s)	211, 495, 900
FauNDI	CATATG	1 cut(s)	469
Fnu4HI	GCNGC	5 cut(s)	63, 442, 594, 748, 801
FokI	GGATG	3 cut(s)	134, 627, 767
FriOI	GRGCYC	2 cut(s)	165, 1042
Fsp4HI	GCNGC	5 cut(s)	63, 442, 594, 748, 801
FspBI	CTAG	1 cut(s)	447
FspI	TGCGCA	1 cut(s)	630
GlaI	GCGC	2 cut(s)	630, 804
GluI	GCNGC	5 cut(s)	63, 442, 594, 748, 801
GsuI	CTGGAG	3 cut(s)	410, 678, 763
HaeIII	GGCC	1 cut(s)	528
HapII	CCGG	4 cut(s)	74, 529, 536, 669
HhaI	GCGC	2 cut(s)	631, 805
Hin1II	CATG	3 cut(s)	215, 499, 904
Hin6I	GCGC	2 cut(s)	629, 803
HinP1I	GCGC	2 cut(s)	629, 803
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	4 cut(s)	137, 296, 404, 792
HpaII	CCGG	4 cut(s)	74, 529, 536, 669
HphI	GGTGA	3 cut(s)	550, 683, 904
Hpy166II	GTNNAC	3 cut(s)	238, 273, 765
Hpy188I	TCNGA	7 cut(s)	136, 142, 173, 346, 382, 409, 718
Hpy188III	TCNNGA	4 cut(s)	89, 260, 725, 812
Hpy8I	GTNNAC	3 cut(s)	238, 273, 765
Hpy99I	CGWCG	2 cut(s)	254, 585
HpyAV	CCTTC	2 cut(s)	28, 855
HpyCH4III	ACNGT	3 cut(s)	169, 391, 642
HpyCH4V	TGCA	4 cut(s)	71, 341, 554, 978
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 120, 347, 360, 419, 683
HpyF3I	CTNAG	6 cut(s)	98, 437, 560, 717, 785, 1023
Hsp92II	CATG	3 cut(s)	215, 499, 904
HspAI	GCGC	2 cut(s)	629, 803
LmnI	GCTCC	3 cut(s)	590, 744, 1037
Lsp1109I	GCAGC	4 cut(s)	49, 453, 605, 787
LweI	GCATC	6 cut(s)	132, 156, 328, 350, 400, 409
MabI	ACCWGGT	1 cut(s)	733
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	4 cut(s)	101, 214, 475, 538
MboII	GAAGA	2 cut(s)	45, 636
MhlI	GDGCHC	3 cut(s)	165, 1042, 1056
MluCI	AATT	7 cut(s)	78, 107, 318, 366, 572, 657, 1060
MlyI	GAGTC	2 cut(s)	146, 801
MmeI	TCCRAC	1 cut(s)	120
Mph1103I	ATGCAT	1 cut(s)	343
MseI	TTAA	4 cut(s)	188, 393, 576, 1014
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	4 cut(s)	74, 529, 536, 669
MspR9I	CCNGG	8 cut(s)	282, 428, 669, 696, 735, 742, 752, 933
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	7 cut(s)	282, 428, 696, 735, 742, 752, 933
MwoI	GCNNNNNNNGC	6 cut(s)	68, 120, 347, 360, 419, 683
NciI	CCSGG	1 cut(s)	669
NdeI	CATATG	1 cut(s)	469
NlaIII	CATG	3 cut(s)	215, 499, 904
NlaIV	GGNNCC	3 cut(s)	87, 739, 746
NmuCI	GTSAC	4 cut(s)	101, 214, 475, 538
NsbI	TGCGCA	1 cut(s)	630
NsiI	ATGCAT	1 cut(s)	343
NspV	TTCGAA	1 cut(s)	654
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	2 cut(s)	296, 404
PfoI	TCCNGGA	1 cut(s)	740
PkrI	GCNGC	5 cut(s)	64, 443, 595, 749, 802
PleI	GAGTC	2 cut(s)	145, 800
PpsI	GAGTC	2 cut(s)	145, 800
PsiI	TTATAA	1 cut(s)	834
Psp124BI	GAGCTC	2 cut(s)	165, 1042
Psp6I	CCWGG	7 cut(s)	280, 426, 694, 733, 740, 750, 931
PspGI	CCWGG	7 cut(s)	280, 426, 694, 733, 740, 750, 931
PspN4I	GGNNCC	3 cut(s)	87, 739, 746
PspPI	GGNCC	1 cut(s)	983
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	4 cut(s)	239, 272, 764, 968
RsaNI	GTAC	4 cut(s)	238, 271, 763, 967
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	2 cut(s)	165, 1042
SaqAI	TTAA	4 cut(s)	188, 393, 576, 1014
SatI	GCNGC	5 cut(s)	63, 442, 594, 748, 801
Sau96I	GGNCC	1 cut(s)	983
ScaI	AGTACT	1 cut(s)	968
SchI	GAGTC	2 cut(s)	146, 801
ScrFI	CCNGG	8 cut(s)	282, 428, 669, 696, 735, 742, 752, 933
SduI	GDGCHC	3 cut(s)	165, 1042, 1056
SexAI	ACCWGGT	1 cut(s)	733
SfaNI	GCATC	6 cut(s)	132, 156, 328, 350, 400, 409
SfcI	CTRYAG	1 cut(s)	886
SfuI	TTCGAA	1 cut(s)	654
SinI	GGWCC	1 cut(s)	983
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	4 cut(s)	608, 723, 810, 1041
SmoI	CTYRAG	4 cut(s)	608, 723, 810, 1041
SpeI	ACTAGT	1 cut(s)	446
Sse9I	AATT	7 cut(s)	78, 107, 318, 366, 572, 657, 1060
SsiI	CCGC	3 cut(s)	375, 588, 748
SspMI	CTAG	1 cut(s)	447
SstI	GAGCTC	2 cut(s)	165, 1042
StyD4I	CCNGG	8 cut(s)	280, 426, 667, 694, 733, 740, 750, 931
StyI	CCWWGG	2 cut(s)	309, 601
TaaI	ACNGT	3 cut(s)	169, 391, 642
TaqI	TCGA	2 cut(s)	417, 654
TasI	AATT	7 cut(s)	78, 107, 318, 366, 572, 657, 1060
TatI	WGTACW	3 cut(s)	237, 270, 966
TauI	GCSGC	1 cut(s)	750
TfiI	GAWTC	2 cut(s)	296, 404
Tru1I	TTAA	4 cut(s)	188, 393, 576, 1014
Tru9I	TTAA	4 cut(s)	188, 393, 576, 1014
TscAI	CASTG	4 cut(s)	106, 631, 867, 985
TseFI	GTSAC	4 cut(s)	101, 214, 475, 538
TseI	GCWGC	4 cut(s)	62, 441, 593, 800
Tsp45I	GTSAC	4 cut(s)	101, 214, 475, 538
TspDTI	ATGAA	5 cut(s)	174, 210, 695, 870, 981
TspGWI	ACGGA	2 cut(s)	13, 308
TspRI	CASTG	4 cut(s)	106, 631, 867, 985
VpaK11BI	GGWCC	1 cut(s)	983
XapI	RAATTY	2 cut(s)	107, 572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XspI	CTAG	1 cut(s)	447
ZrmI	AGTACT	1 cut(s)	968
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.