Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013539

Physical Location & Seq

Genomic Coordinates Forward (+)

43553040 .. 43555030

Gene Structure 1991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG331600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTTCTCTTCTTTCCTTCTCTCTTCCCAACTCAAAGATGATGATAAGAGCTTCTTCACCATCAACTTCTGCAACGACGATTACCGTGCCAGAGAGCCTTACTGACAGGTTTGGCAGAAAAGGCATCAAGTTTGTGGAGTATGACAACACTCCATTTGTTGAGCTCACAGTCAGAAATGGCAGTTCATTAAAGCTTCAAATACCGAATGCTCATGTAACTTCGTATAAGCCTAAGGTGTATTGGAAAGACGATGGCTTTGAGGAGGTTCTTTACACAATTCCAGGTAAAGGAACTGAGCCTAACAAAGCCAAGGGGGGAATTGGTTTGGTCTTAAATGATGTATCACAGGCAGGTTCTAAAGGGACACTTGTATCCACTTCTGAATGGACAGTGAAAGATGTTGATTCGGATTCCATTGATGCTATGCAGGTTGAATTAAGCAGCACCAGTGGAAAACTTGATATAACATATGTTGTCACACTGTACCCGGTAAGCATTGCAACAGCAGTTAAAGTGAAGAACAAAGGCCGAAAGGATGCGACTCTAACAAGTGCTATACAAAGCCATTTCAAATTTAAGAGACGAAGTGGAGCAGCAATCCAAGGTCTCAAGGGCTGCAGTTACACTGTACAACCTCCACTATCTTCTCCATTCGAGATTTTGTCACCAAACGAAGCATTGAAAGCTGATCCATCACCTGGGTGGTTCTCTTCTGAGCCTGAAGAAAAACCAGGTTCTTGGACTCAACAAGATGTACCTTACACCATTTTGAAAAACAAGCTCAGCAGAGTTTATGCTGCGCCTCCTAAAGAGAGACTGAAGGCCATTTATAACACTCCTCCTTCAAAATATGATACACTTGATCAGGGACGAGAGCTCTTCTTCAGGGTGATAAGGATGGGATTTGATGACATCTACTTATCCAGCCCTGGTTCTTTGTCAGAAAAATATGGGAATGAATATTTTATATGCACCGGCCCTGCTTCAATGTTAGTACCTGTGGTTGTGAAACCTGGTGAGGAATGGAGAGGAGCACAGGTCATTGAGCACGACAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

38.87

Weight (kDa)

8.75

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64770 AT1G64770 AT1G64770
fragaria_vesca	FvH4_6g27680
malus_domestica	MD17G1264700.v1.1
prunus_persica	Prupe.3G114100_v2.0.a1
pyrus_communis	pycom17g26450
rosa_chinensis	RchiOBHm_Chr2g0130821
rosa_multiflora	Rmu_sc0031245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113540 Rroxscaffold_2G00113880
rosa_rugosa	Rorug02G0293000
rosa_samantha	Rh2AG344800 Rh2BG353200 Rh2CG331600 Rh2DG371000
rosa_wichuraiana	Rw0G012510 Rw2G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	834
Acc36I	ACCTGC	2 cut(s)	344, 421
AccB7I	CCANNNNNTGG	1 cut(s)	701
AclWI	GGATC	1 cut(s)	686
AcsI	RAATTY	1 cut(s)	575
AcuI	CTGAAG	3 cut(s)	744, 842, 871
AfaI	GTAC	4 cut(s)	488, 633, 759, 999
AfiI	CCNNNNNNNGG	2 cut(s)	290, 701
AgsI	TTSAA	7 cut(s)	200, 437, 574, 685, 775, 849, 990
AjnI	CCWGG	5 cut(s)	283, 700, 733, 931, 1015
AleI	CACNNNNGTG	1 cut(s)	703
AluBI	AGCT	6 cut(s)	53, 166, 196, 689, 784, 880
AluI	AGCT	6 cut(s)	53, 166, 196, 689, 784, 880
Alw21I	GWGCWC	4 cut(s)	168, 882, 1039, 1053
Alw26I	GTCTC	3 cut(s)	577, 614, 811
AlwI	GGATC	1 cut(s)	686
AoxI	GGCC	3 cut(s)	529, 825, 979
ApeKI	GCWGC	4 cut(s)	444, 596, 618, 800
ApoI	RAATTY	1 cut(s)	575
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspLEI	GCGC	1 cut(s)	805
AspS9I	GGNCC	1 cut(s)	980
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	5 cut(s)	51, 660, 690, 904, 1031
AxyI	CCTNAGG	1 cut(s)	234
BaeI	ACNNNNGTAYC	2 cut(s)	357, 390
BanII	GRGCYC	2 cut(s)	168, 882
Bbv12I	GWGCWC	4 cut(s)	168, 882, 1039, 1053
BbvI	GCAGC	4 cut(s)	456, 605, 608, 787
BccI	CCATC	4 cut(s)	70, 248, 703, 895
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	5 cut(s)	285, 702, 735, 933, 1017
BciVI	GTATCC	1 cut(s)	385
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	1 cut(s)	491
BcoDI	GTCTC	3 cut(s)	577, 614, 811
BfmI	CTRYAG	1 cut(s)	619
BfuAI	ACCTGC	2 cut(s)	344, 421
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	4 cut(s)	445, 597, 619, 801
BlpI	GCTNAGC	1 cut(s)	785
BlsI	GCNGC	4 cut(s)	446, 598, 620, 802
Bme1390I	CCNGG	6 cut(s)	285, 491, 702, 735, 933, 1017
BmgT120I	GGNCC	1 cut(s)	980
BmrFI	CCNGG	6 cut(s)	285, 491, 702, 735, 933, 1017
BmsI	GCATC	3 cut(s)	135, 412, 529
Bpu1102I	GCTNAGC	1 cut(s)	785
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	491
BsaI	GGTCTC	1 cut(s)	614
BsaJI	CCNNGG	4 cut(s)	312, 604, 701, 931
BsaXI	ACNNNNNCTCC	2 cut(s)	1026, 1056
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 701
Bse118I	RCCGGY	1 cut(s)	977
Bse1I	ACTGG	1 cut(s)	450
Bse21I	CCTNAGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	5 cut(s)	285, 702, 735, 933, 1017
BseDI	CCNNGG	4 cut(s)	312, 604, 701, 931
BseGI	GGATG	2 cut(s)	544, 906
BseLI	CCNNNNNNNGG	2 cut(s)	290, 701
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	3 cut(s)	288, 708, 799
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	3 cut(s)	278, 831, 1047
BseXI	GCAGC	4 cut(s)	456, 605, 608, 787
BshFI	GGCC	3 cut(s)	531, 827, 981
BsiHKAI	GWGCWC	4 cut(s)	168, 882, 1039, 1053
BsiSI	CCGG	2 cut(s)	491, 978
BslFI	GGGAC	2 cut(s)	379, 885
BslI	CCNNNNNNNGG	2 cut(s)	290, 701
BsmAI	GTCTC	3 cut(s)	577, 614, 811
BsmBI	CGTCTC	1 cut(s)	577
BsmFI	GGGAC	2 cut(s)	379, 885
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	531, 827, 981
Bso31I	GGTCTC	1 cut(s)	614
Bsp1286I	GDGCHC	4 cut(s)	168, 882, 1039, 1053
Bsp1407I	TGTACA	1 cut(s)	631
Bsp143I	GATC	2 cut(s)	691, 865
Bsp1720I	GCTNAGC	1 cut(s)	785
BspANI	GGCC	3 cut(s)	531, 827, 981
BspCNI	CTCAG	3 cut(s)	289, 709, 798
BspMAI	CTGCAG	1 cut(s)	623
BspMI	ACCTGC	2 cut(s)	344, 421
BspPI	GGATC	1 cut(s)	686
BspQI	GCTCTTC	1 cut(s)	887
BspTNI	GGTCTC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	977
BsrGI	TGTACA	1 cut(s)	631
BsrI	ACTGG	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	977
BssECI	CCNNGG	4 cut(s)	312, 604, 701, 931
BssMI	GATC	2 cut(s)	691, 865
BssT1I	CCWWGG	2 cut(s)	312, 604
Bst2UI	CCWGG	5 cut(s)	285, 702, 735, 933, 1017
Bst4CI	ACNGT	5 cut(s)	88, 172, 394, 486, 631
Bst6I	CTCTTC	4 cut(s)	15, 30, 718, 887
BstAUI	TGTACA	1 cut(s)	631
BstDEI	CTNAG	4 cut(s)	234, 297, 717, 785
BstF5I	GGATG	2 cut(s)	544, 906
BstHHI	GCGC	1 cut(s)	805
BstKTI	GATC	2 cut(s)	694, 868
BstMAI	GTCTC	3 cut(s)	577, 614, 811
BstMBI	GATC	2 cut(s)	691, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 686
BstNI	CCWGG	5 cut(s)	285, 702, 735, 933, 1017
BstSCI	CCNGG	6 cut(s)	283, 489, 700, 733, 931, 1015
BstSFI	CTRYAG	1 cut(s)	619
BstV1I	GCAGC	4 cut(s)	456, 605, 608, 787
BstXI	CCANNNNNNTGG	1 cut(s)	741
Bsu36I	CCTNAGG	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	531, 827, 981
BtsCI	GGATG	2 cut(s)	544, 906
BtsIMutI	CAGTG	4 cut(s)	399, 457, 482, 627
BveI	ACCTGC	2 cut(s)	344, 421
CfoI	GCGC	1 cut(s)	805
Cfr10I	RCCGGY	1 cut(s)	977
Cfr13I	GGNCC	1 cut(s)	980
CsiI	ACCWGGT	2 cut(s)	733, 1015
Csp6I	GTAC	4 cut(s)	487, 632, 758, 998
CviAII	CATG	1 cut(s)	215
CviQI	GTAC	4 cut(s)	487, 632, 758, 998
DdeI	CTNAG	4 cut(s)	234, 297, 717, 785
DpnI	GATC	2 cut(s)	693, 867
DpnII	GATC	2 cut(s)	691, 865
Eam1104I	CTCTTC	4 cut(s)	15, 30, 718, 887
EarI	CTCTTC	4 cut(s)	15, 30, 718, 887
Ecl136II	GAGCTC	2 cut(s)	166, 880
Eco130I	CCWWGG	2 cut(s)	312, 604
Eco24I	GRGCYC	2 cut(s)	168, 882
Eco31I	GGTCTC	1 cut(s)	614
Eco53kI	GAGCTC	2 cut(s)	166, 880
Eco57I	CTGAAG	3 cut(s)	744, 842, 871
Eco81I	CCTNAGG	1 cut(s)	234
EcoICRI	GAGCTC	2 cut(s)	166, 880
EcoRII	CCWGG	5 cut(s)	283, 700, 733, 931, 1015
EcoT14I	CCWWGG	2 cut(s)	312, 604
EcoT38I	GRGCYC	2 cut(s)	168, 882
ErhI	CCWWGG	2 cut(s)	312, 604
Esp3I	CGTCTC	1 cut(s)	577
FaeI	CATG	1 cut(s)	218
FalI	AAGNNNNNCTT	4 cut(s)	40, 72, 354, 386
FaqI	GGGAC	2 cut(s)	379, 885
FatI	CATG	1 cut(s)	214
FauNDI	CATATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	865
Fnu4HI	GCNGC	4 cut(s)	445, 597, 619, 801
FokI	GGATG	2 cut(s)	551, 913
FriOI	GRGCYC	2 cut(s)	168, 882
Fsp4HI	GCNGC	4 cut(s)	445, 597, 619, 801
GlaI	GCGC	1 cut(s)	804
GluI	GCNGC	4 cut(s)	445, 597, 619, 801
HaeIII	GGCC	3 cut(s)	531, 827, 981
HapII	CCGG	2 cut(s)	491, 978
HhaI	GCGC	1 cut(s)	805
Hin1II	CATG	1 cut(s)	218
Hin6I	GCGC	1 cut(s)	803
HinP1I	GCGC	1 cut(s)	803
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	4 cut(s)	407, 413, 544, 745
HpaII	CCGG	2 cut(s)	491, 978
HphI	GGTGA	5 cut(s)	51, 660, 690, 904, 1031
Hpy188I	TCNGA	5 cut(s)	176, 385, 412, 718, 946
Hpy188III	TCNNGA	1 cut(s)	658
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	3 cut(s)	28, 817, 855
HpyCH4III	ACNGT	5 cut(s)	88, 172, 394, 486, 631
HpyCH4V	TGCA	5 cut(s)	74, 430, 503, 621, 975
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 686
HpyF3I	CTNAG	4 cut(s)	234, 297, 717, 785
Hsp92II	CATG	1 cut(s)	218
HspAI	GCGC	1 cut(s)	803
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	2 cut(s)	691, 865
LguI	GCTCTTC	1 cut(s)	887
LmnI	GCTCC	2 cut(s)	593, 1034
Lsp1109I	GCAGC	4 cut(s)	456, 605, 608, 787
LweI	GCATC	3 cut(s)	135, 412, 529
MabI	ACCWGGT	2 cut(s)	733, 1015
MaeIII	GTNAC	4 cut(s)	217, 478, 623, 666
MalI	GATC	2 cut(s)	693, 867
MboI	GATC	2 cut(s)	691, 865
MboII	GAAGA	8 cut(s)	17, 48, 532, 639, 705, 737, 874, 877
MhlI	GDGCHC	4 cut(s)	168, 882, 1039, 1053
MluCI	AATT	5 cut(s)	279, 321, 437, 575, 1057
MlyI	GAGTC	2 cut(s)	538, 739
MnlI	CCTC	7 cut(s)	256, 259, 648, 816, 852, 1015, 1025
MseI	TTAA	5 cut(s)	191, 335, 440, 513, 579
MslI	CAYNNNNRTG	1 cut(s)	703
MspI	CCGG	2 cut(s)	491, 978
MspR9I	CCNGG	6 cut(s)	285, 491, 702, 735, 933, 1017
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	5 cut(s)	285, 702, 735, 933, 1017
MwoI	GCNNNNNNNGC	2 cut(s)	123, 686
NciI	CCSGG	1 cut(s)	491
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	2 cut(s)	691, 865
NlaIII	CATG	1 cut(s)	218
NmuCI	GTSAC	2 cut(s)	478, 666
OliI	CACNNNNGTG	1 cut(s)	703
PciSI	GCTCTTC	1 cut(s)	887
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	407, 413
PflMI	CCANNNNNTGG	1 cut(s)	701
PkrI	GCNGC	4 cut(s)	446, 598, 620, 802
PleI	GAGTC	2 cut(s)	538, 739
PpsI	GAGTC	2 cut(s)	538, 739
PsiI	TTATAA	1 cut(s)	834
Psp124BI	GAGCTC	2 cut(s)	168, 882
Psp6I	CCWGG	5 cut(s)	283, 700, 733, 931, 1015
PspGI	CCWGG	5 cut(s)	283, 700, 733, 931, 1015
PspPI	GGNCC	1 cut(s)	980
PstI	CTGCAG	1 cut(s)	623
RsaI	GTAC	4 cut(s)	488, 633, 759, 999
RsaNI	GTAC	4 cut(s)	487, 632, 758, 998
RseI	CAYNNNNRTG	1 cut(s)	703
SacI	GAGCTC	2 cut(s)	168, 882
SapI	GCTCTTC	1 cut(s)	887
SaqAI	TTAA	5 cut(s)	191, 335, 440, 513, 579
SatI	GCNGC	4 cut(s)	445, 597, 619, 801
Sau3AI	GATC	2 cut(s)	691, 865
Sau96I	GGNCC	1 cut(s)	980
SchI	GAGTC	2 cut(s)	538, 739
ScrFI	CCNGG	6 cut(s)	285, 491, 702, 735, 933, 1017
SduI	GDGCHC	4 cut(s)	168, 882, 1039, 1053
SexAI	ACCWGGT	2 cut(s)	733, 1015
SfaNI	GCATC	3 cut(s)	135, 412, 529
SfcI	CTRYAG	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	703
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	5 cut(s)	279, 321, 437, 575, 1057
SspI	AATATT	1 cut(s)	965
SstI	GAGCTC	2 cut(s)	168, 882
StyD4I	CCNGG	6 cut(s)	283, 489, 700, 733, 931, 1015
StyI	CCWWGG	2 cut(s)	312, 604
TaaI	ACNGT	5 cut(s)	88, 172, 394, 486, 631
TaqI	TCGA	1 cut(s)	657
TasI	AATT	5 cut(s)	279, 321, 437, 575, 1057
TatI	WGTACW	1 cut(s)	631
TfiI	GAWTC	2 cut(s)	407, 413
Tru1I	TTAA	5 cut(s)	191, 335, 440, 513, 579
Tru9I	TTAA	5 cut(s)	191, 335, 440, 513, 579
TscAI	CASTG	4 cut(s)	399, 457, 489, 634
TseFI	GTSAC	2 cut(s)	478, 666
TseI	GCWGC	4 cut(s)	444, 596, 618, 800
Tsp45I	GTSAC	2 cut(s)	478, 666
TspDTI	ATGAA	2 cut(s)	177, 975
TspRI	CASTG	4 cut(s)	399, 457, 489, 634
Van91I	CCANNNNNTGG	1 cut(s)	701
XapI	RAATTY	1 cut(s)	575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.