Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013539

Physical Location & Seq

Genomic Coordinates Reverse (-)

39221305 .. 39223544

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCAGGTTGAATTAAGCAGCACCAGTGGAAAACTTGATATAACATATGTTGTCACACTGTACCCGGTAAGCATTGCGACAGCAGTTAAAGTGAAAAACAAAGGCCGAAAGGATGCAACTCTAACAAGTGCTATACTCAGCCATTTCAAATTTAAGAGACGAAGTGGAGCAGCAATCCAAGGTCTCAAGGGCTGCAGTTACACTGTACAACCTCCACTATCTTCTCCATTCGAGATTTTGTCACCAAACGAAGCATTGAAAGCTGATCCATCACCTGGGTGGTTCTCTTCTGAGCCTGAAGAAAAACCAGGTTCTTGGACTCAACAAGATGTACCTTACACCATTTTGAAAAACAAGCTGAGCAGAGTATATGCTGCGCCTCCTAAAGAGAGACTGAAGGCCATTTATAACACTCCTCCTTCAAAATATGATACACTTGATCAGGGACGAGAGCTCTTCTTCAGGGTGATAAGGATGGGATTTGATGACATCTACTTATCCAGCCCTGGTTCTTTGTCCGAGAAATATGGGAATGAGTATTTTATATGCACCGGCCCTGCTTCAATGTTAGTACCTGTGGTTGTGAAACCTGGTGAGGAATGGAGAGGAGCACAGGTCATTGAGCACGACAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.51

Weight (kDa)

8.92

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64770 AT1G64770 AT1G64770
fragaria_vesca	FvH4_6g27680
malus_domestica	MD17G1264700.v1.1
prunus_persica	Prupe.3G114100_v2.0.a1
pyrus_communis	pycom17g26450
rosa_chinensis	RchiOBHm_Chr2g0130821
rosa_multiflora	Rmu_sc0031245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113540 Rroxscaffold_2G00113880
rosa_rugosa	Rorug02G0293000
rosa_samantha	Rh2AG344800 Rh2BG353200 Rh2CG331600 Rh2DG371000
rosa_wichuraiana	Rw0G012510 Rw2G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AccB7I	CCANNNNNTGG	1 cut(s)	275
AclWI	GGATC	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	3 cut(s)	318, 416, 445
AfaI	GTAC	4 cut(s)	62, 207, 333, 573
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	6 cut(s)	11, 148, 259, 349, 423, 564
AjnI	CCWGG	4 cut(s)	274, 307, 505, 589
AleI	CACNNNNGTG	1 cut(s)	277
AluBI	AGCT	3 cut(s)	263, 358, 454
AluI	AGCT	3 cut(s)	263, 358, 454
Alw21I	GWGCWC	3 cut(s)	456, 613, 627
Alw26I	GTCTC	3 cut(s)	151, 188, 385
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	3 cut(s)	103, 399, 553
ApeKI	GCWGC	4 cut(s)	18, 170, 192, 374
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	554
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	4 cut(s)	234, 264, 478, 605
BanII	GRGCYC	1 cut(s)	456
Bbv12I	GWGCWC	3 cut(s)	456, 613, 627
BbvI	GCAGC	4 cut(s)	30, 179, 182, 361
BccI	CCATC	2 cut(s)	277, 469
BciT130I	CCWGG	4 cut(s)	276, 309, 507, 591
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	3 cut(s)	151, 188, 385
BfmI	CTRYAG	1 cut(s)	193
BisI	GCNGC	4 cut(s)	19, 171, 193, 375
BlpI	GCTNAGC	1 cut(s)	359
BlsI	GCNGC	4 cut(s)	20, 172, 194, 376
Bme1390I	CCNGG	5 cut(s)	65, 276, 309, 507, 591
BmgT120I	GGNCC	1 cut(s)	554
BmrFI	CCNGG	5 cut(s)	65, 276, 309, 507, 591
BmsI	GCATC	1 cut(s)	103
Bpu1102I	GCTNAGC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	178, 275, 505
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	551
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	4 cut(s)	276, 309, 507, 591
BseDI	CCNNGG	3 cut(s)	178, 275, 505
BseGI	GGATG	2 cut(s)	118, 480
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	3 cut(s)	151, 282, 350
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	2 cut(s)	405, 621
BseXI	GCAGC	4 cut(s)	30, 179, 182, 361
BshFI	GGCC	3 cut(s)	105, 401, 555
BsiHKAI	GWGCWC	3 cut(s)	456, 613, 627
BsiSI	CCGG	2 cut(s)	65, 552
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	3 cut(s)	151, 188, 385
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	3 cut(s)	105, 401, 555
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	3 cut(s)	456, 613, 627
Bsp1407I	TGTACA	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	265, 439
Bsp1720I	GCTNAGC	1 cut(s)	359
BspANI	GGCC	3 cut(s)	105, 401, 555
BspCNI	CTCAG	3 cut(s)	150, 283, 351
BspMAI	CTGCAG	1 cut(s)	197
BspPI	GGATC	1 cut(s)	260
BspQI	GCTCTTC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	551
BsrGI	TGTACA	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	551
BssECI	CCNNGG	3 cut(s)	178, 275, 505
BssMI	GATC	2 cut(s)	265, 439
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	4 cut(s)	276, 309, 507, 591
Bst4CI	ACNGT	2 cut(s)	60, 205
Bst6I	CTCTTC	2 cut(s)	292, 461
BstAUI	TGTACA	1 cut(s)	205
BstDEI	CTNAG	3 cut(s)	137, 291, 359
BstF5I	GGATG	2 cut(s)	118, 480
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	2 cut(s)	268, 442
BstMAI	GTCTC	3 cut(s)	151, 188, 385
BstMBI	GATC	2 cut(s)	265, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	4 cut(s)	276, 309, 507, 591
BstSCI	CCNGG	5 cut(s)	63, 274, 307, 505, 589
BstSFI	CTRYAG	1 cut(s)	193
BstV1I	GCAGC	4 cut(s)	30, 179, 182, 361
BstXI	CCANNNNNNTGG	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	105, 401, 555
BtsCI	GGATG	2 cut(s)	118, 480
BtsIMutI	CAGTG	3 cut(s)	31, 56, 201
CfoI	GCGC	1 cut(s)	379
Cfr10I	RCCGGY	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	554
CsiI	ACCWGGT	2 cut(s)	307, 589
Csp6I	GTAC	4 cut(s)	61, 206, 332, 572
CviQI	GTAC	4 cut(s)	61, 206, 332, 572
DdeI	CTNAG	3 cut(s)	137, 291, 359
DpnI	GATC	2 cut(s)	267, 441
DpnII	GATC	2 cut(s)	265, 439
Eam1104I	CTCTTC	2 cut(s)	292, 461
EarI	CTCTTC	2 cut(s)	292, 461
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	3 cut(s)	318, 416, 445
EcoICRI	GAGCTC	1 cut(s)	454
EcoRII	CCWGG	4 cut(s)	274, 307, 505, 589
EcoT14I	CCWWGG	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	151
FaqI	GGGAC	1 cut(s)	459
FauNDI	CATATG	1 cut(s)	46
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	4 cut(s)	19, 171, 193, 375
FokI	GGATG	2 cut(s)	125, 487
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	4 cut(s)	19, 171, 193, 375
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	4 cut(s)	19, 171, 193, 375
HaeIII	GGCC	3 cut(s)	105, 401, 555
HapII	CCGG	2 cut(s)	65, 552
HhaI	GCGC	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	1 cut(s)	319
HpaII	CCGG	2 cut(s)	65, 552
HphI	GGTGA	4 cut(s)	234, 264, 478, 605
Hpy188I	TCNGA	2 cut(s)	292, 520
Hpy188III	TCNNGA	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	391, 429
HpyCH4III	ACNGT	2 cut(s)	60, 205
HpyCH4V	TGCA	4 cut(s)	4, 116, 195, 549
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	3 cut(s)	137, 291, 359
HspAI	GCGC	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	265, 439
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	2 cut(s)	167, 608
Lsp1109I	GCAGC	4 cut(s)	30, 179, 182, 361
LweI	GCATC	1 cut(s)	103
MabI	ACCWGGT	2 cut(s)	307, 589
MaeIII	GTNAC	3 cut(s)	52, 197, 240
MalI	GATC	2 cut(s)	267, 441
MboI	GATC	2 cut(s)	265, 439
MboII	GAAGA	5 cut(s)	213, 279, 311, 448, 451
MhlI	GDGCHC	3 cut(s)	456, 613, 627
MluCI	AATT	3 cut(s)	11, 149, 631
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	5 cut(s)	222, 390, 426, 589, 599
MseI	TTAA	3 cut(s)	14, 87, 153
MslI	CAYNNNNRTG	1 cut(s)	277
MspI	CCGG	2 cut(s)	65, 552
MspR9I	CCNGG	5 cut(s)	65, 276, 309, 507, 591
MvaI	CCWGG	4 cut(s)	276, 309, 507, 591
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	2 cut(s)	265, 439
NmuCI	GTSAC	2 cut(s)	52, 240
OliI	CACNNNNGTG	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	461
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	20, 172, 194, 376
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	4 cut(s)	274, 307, 505, 589
PspGI	CCWGG	4 cut(s)	274, 307, 505, 589
PspPI	GGNCC	1 cut(s)	554
PstI	CTGCAG	1 cut(s)	197
RsaI	GTAC	4 cut(s)	62, 207, 333, 573
RsaNI	GTAC	4 cut(s)	61, 206, 332, 572
RseI	CAYNNNNRTG	1 cut(s)	277
SacI	GAGCTC	1 cut(s)	456
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	3 cut(s)	14, 87, 153
SatI	GCNGC	4 cut(s)	19, 171, 193, 375
Sau3AI	GATC	2 cut(s)	265, 439
Sau96I	GGNCC	1 cut(s)	554
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	5 cut(s)	65, 276, 309, 507, 591
SduI	GDGCHC	3 cut(s)	456, 613, 627
SexAI	ACCWGGT	2 cut(s)	307, 589
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	3 cut(s)	11, 149, 631
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	5 cut(s)	63, 274, 307, 505, 589
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	60, 205
TaqI	TCGA	1 cut(s)	231
TasI	AATT	3 cut(s)	11, 149, 631
TatI	WGTACW	1 cut(s)	205
Tru1I	TTAA	3 cut(s)	14, 87, 153
Tru9I	TTAA	3 cut(s)	14, 87, 153
TscAI	CASTG	3 cut(s)	31, 63, 208
TseFI	GTSAC	2 cut(s)	52, 240
TseI	GCWGC	4 cut(s)	18, 170, 192, 374
Tsp45I	GTSAC	2 cut(s)	52, 240
TspRI	CASTG	3 cut(s)	31, 63, 208
Van91I	CCANNNNNTGG	1 cut(s)	275
XapI	RAATTY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.