Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013539

Physical Location & Seq

Genomic Coordinates Forward (+)

52787297 .. 52789109

Gene Structure 1813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG371000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGATGATAAGAGCTTCTTCACCATCAACTTCTGCAACGACGATTACCGTGCCAGAGAGCCTTACTGACAGGTTTGGCAGAAAAGGCATCAAGTTTGTGGAGTATGACAACACTCCATTTGTTGAGCTCACAGTCAGAAATGGCAGTTCATTAAAGCTTCAAATACCGAATGCTCATGTAACTTCGTATAAGCCTAAGGTGTATTGGAAAGACGATGGCTTTGAGGAGGTTCTTTACACAATTCCAGGTAAAGGTACTGAGCCTAACAAAGCCAAGGGGGGAATTGGTTTGGTCTTAAATGATGTATCACAGGCAGGTTCTAAAGGGACACTTGTATCCACTTCTGAATGGACAGTGAAAGATGTTGATTCGGATTCCATTGATGCTATGCAGGTTGAATTAAGCAGCACTAGTGGAAAACTTGATATAACATATGTTGTCACACTGTACCCGGTAAGCATTGCAACAGCAGTTAAAGTGAAGAATAAAGGCCGAAAGGATGTGACTCTAACAAGTGCTATACTCAGCCATTTCAAATTTAAGAGACGAAGTGGAGCAGCAATCCAAGGTCTCAAGGGCTGCAGTTACACTGTACAACCTCCACTATCTTCTCCATTCGAGATTTTGTCACCAAACGAAGCATTGAAAGCTGATCCATCACCTGGGTGGTTCTCTTCTGAGCCTGAAGAAAAACCAGGTTCTTGGACTCAACAAGATGTACCTTACACCATTTTGAAAAACAAGCTCAGCAGAGTTTATGCTGCGCCTCCTAAAGAGAGACTGAAGGCCATTTATAACACTCCTCCTTCAAAATATGATACACTTGATCAGGGACGAGAGCTCTTCTTCAGGGTGATAAGGATGGGATTTGATGACATCTACTTATCCAGCCCTGGTTCTTTGTCAGAAAAATATGGGAATGAGTATTTTATATGCACCGGCCCTGCTTCAATGTTAGTACCTGTGGTTGTGAAACCTGGTGAGGAATGGAGAGGAGCACAGGTCATTGAGCACGACAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

37.51

Weight (kDa)

8.57

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64770 AT1G64770 AT1G64770
fragaria_vesca	FvH4_6g27680
malus_domestica	MD17G1264700.v1.1
prunus_persica	Prupe.3G114100_v2.0.a1
pyrus_communis	pycom17g26450
rosa_chinensis	RchiOBHm_Chr2g0130821
rosa_multiflora	Rmu_sc0031245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113540 Rroxscaffold_2G00113880
rosa_rugosa	Rorug02G0293000
rosa_samantha	Rh2AG344800 Rh2BG353200 Rh2CG331600 Rh2DG371000
rosa_wichuraiana	Rw0G012510 Rw2G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
Acc36I	ACCTGC	2 cut(s)	305, 382
AccB7I	CCANNNNNTGG	1 cut(s)	662
AclWI	GGATC	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	3 cut(s)	705, 803, 832
AfaI	GTAC	5 cut(s)	256, 449, 594, 720, 960
AfiI	CCNNNNNNNGG	2 cut(s)	251, 662
AgsI	TTSAA	7 cut(s)	161, 398, 535, 646, 736, 810, 951
AhlI	ACTAGT	1 cut(s)	410
AjnI	CCWGG	5 cut(s)	244, 661, 694, 892, 976
AleI	CACNNNNGTG	1 cut(s)	664
AluBI	AGCT	6 cut(s)	14, 127, 157, 650, 745, 841
AluI	AGCT	6 cut(s)	14, 127, 157, 650, 745, 841
Alw21I	GWGCWC	4 cut(s)	129, 843, 1000, 1014
Alw26I	GTCTC	3 cut(s)	538, 575, 772
AlwI	GGATC	1 cut(s)	647
AoxI	GGCC	3 cut(s)	490, 786, 940
ApeKI	GCWGC	4 cut(s)	405, 557, 579, 761
ApoI	RAATTY	1 cut(s)	536
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspLEI	GCGC	1 cut(s)	766
AspS9I	GGNCC	1 cut(s)	941
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	5 cut(s)	12, 621, 651, 865, 992
AxyI	CCTNAGG	1 cut(s)	195
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BanII	GRGCYC	2 cut(s)	129, 843
Bbv12I	GWGCWC	4 cut(s)	129, 843, 1000, 1014
BbvI	GCAGC	4 cut(s)	417, 566, 569, 748
BccI	CCATC	4 cut(s)	31, 209, 664, 856
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	5 cut(s)	246, 663, 696, 894, 978
BciVI	GTATCC	1 cut(s)	346
BclI	TGATCA	1 cut(s)	826
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	3 cut(s)	538, 575, 772
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	580
BfuAI	ACCTGC	2 cut(s)	305, 382
BfuI	GTATCC	1 cut(s)	346
BisI	GCNGC	4 cut(s)	406, 558, 580, 762
BlpI	GCTNAGC	1 cut(s)	746
BlsI	GCNGC	4 cut(s)	407, 559, 581, 763
Bme1390I	CCNGG	6 cut(s)	246, 452, 663, 696, 894, 978
BmgT120I	GGNCC	1 cut(s)	941
BmrFI	CCNGG	6 cut(s)	246, 452, 663, 696, 894, 978
BmsI	GCATC	2 cut(s)	96, 373
Bpu1102I	GCTNAGC	1 cut(s)	746
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	4 cut(s)	273, 565, 662, 892
BsaXI	ACNNNNNCTCC	2 cut(s)	987, 1017
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 662
Bse118I	RCCGGY	1 cut(s)	938
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	5 cut(s)	246, 663, 696, 894, 978
BseDI	CCNNGG	4 cut(s)	273, 565, 662, 892
BseGI	GGATG	2 cut(s)	505, 867
BseLI	CCNNNNNNNGG	2 cut(s)	251, 662
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	4 cut(s)	249, 538, 669, 760
BseRI	GAGGAG	3 cut(s)	239, 792, 1008
BseXI	GCAGC	4 cut(s)	417, 566, 569, 748
BshFI	GGCC	3 cut(s)	492, 788, 942
BsiHKAI	GWGCWC	4 cut(s)	129, 843, 1000, 1014
BsiSI	CCGG	2 cut(s)	452, 939
BslFI	GGGAC	2 cut(s)	340, 846
BslI	CCNNNNNNNGG	2 cut(s)	251, 662
BsmAI	GTCTC	3 cut(s)	538, 575, 772
BsmBI	CGTCTC	1 cut(s)	538
BsmFI	GGGAC	2 cut(s)	340, 846
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	3 cut(s)	492, 788, 942
Bso31I	GGTCTC	1 cut(s)	575
Bsp1286I	GDGCHC	4 cut(s)	129, 843, 1000, 1014
Bsp1407I	TGTACA	1 cut(s)	592
Bsp143I	GATC	2 cut(s)	652, 826
Bsp1720I	GCTNAGC	1 cut(s)	746
BspANI	GGCC	3 cut(s)	492, 788, 942
BspCNI	CTCAG	4 cut(s)	250, 537, 670, 759
BspMAI	CTGCAG	1 cut(s)	584
BspMI	ACCTGC	2 cut(s)	305, 382
BspPI	GGATC	1 cut(s)	647
BspQI	GCTCTTC	1 cut(s)	848
BspTNI	GGTCTC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	938
BsrGI	TGTACA	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	938
BssECI	CCNNGG	4 cut(s)	273, 565, 662, 892
BssMI	GATC	2 cut(s)	652, 826
BssT1I	CCWWGG	2 cut(s)	273, 565
Bst2UI	CCWGG	5 cut(s)	246, 663, 696, 894, 978
Bst4CI	ACNGT	5 cut(s)	49, 133, 355, 447, 592
Bst6I	CTCTTC	2 cut(s)	679, 848
BstAUI	TGTACA	1 cut(s)	592
BstDEI	CTNAG	5 cut(s)	195, 258, 524, 678, 746
BstF5I	GGATG	2 cut(s)	505, 867
BstHHI	GCGC	1 cut(s)	766
BstKTI	GATC	2 cut(s)	655, 829
BstMAI	GTCTC	3 cut(s)	538, 575, 772
BstMBI	GATC	2 cut(s)	652, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 647
BstNI	CCWGG	5 cut(s)	246, 663, 696, 894, 978
BstSCI	CCNGG	6 cut(s)	244, 450, 661, 694, 892, 976
BstSFI	CTRYAG	1 cut(s)	580
BstV1I	GCAGC	4 cut(s)	417, 566, 569, 748
BstXI	CCANNNNNNTGG	1 cut(s)	702
Bsu36I	CCTNAGG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	3 cut(s)	492, 788, 942
BtsCI	GGATG	2 cut(s)	505, 867
BtsIMutI	CAGTG	3 cut(s)	360, 443, 588
BveI	ACCTGC	2 cut(s)	305, 382
CfoI	GCGC	1 cut(s)	766
Cfr10I	RCCGGY	1 cut(s)	938
Cfr13I	GGNCC	1 cut(s)	941
CsiI	ACCWGGT	2 cut(s)	694, 976
Csp6I	GTAC	5 cut(s)	255, 448, 593, 719, 959
CviAII	CATG	1 cut(s)	176
CviQI	GTAC	5 cut(s)	255, 448, 593, 719, 959
DdeI	CTNAG	5 cut(s)	195, 258, 524, 678, 746
DpnI	GATC	2 cut(s)	654, 828
DpnII	GATC	2 cut(s)	652, 826
Eam1104I	CTCTTC	2 cut(s)	679, 848
EarI	CTCTTC	2 cut(s)	679, 848
Ecl136II	GAGCTC	2 cut(s)	127, 841
Eco130I	CCWWGG	2 cut(s)	273, 565
Eco24I	GRGCYC	2 cut(s)	129, 843
Eco31I	GGTCTC	1 cut(s)	575
Eco53kI	GAGCTC	2 cut(s)	127, 841
Eco57I	CTGAAG	3 cut(s)	705, 803, 832
Eco81I	CCTNAGG	1 cut(s)	195
EcoICRI	GAGCTC	2 cut(s)	127, 841
EcoRII	CCWGG	5 cut(s)	244, 661, 694, 892, 976
EcoT14I	CCWWGG	2 cut(s)	273, 565
EcoT38I	GRGCYC	2 cut(s)	129, 843
ErhI	CCWWGG	2 cut(s)	273, 565
Esp3I	CGTCTC	1 cut(s)	538
FaeI	CATG	1 cut(s)	179
FalI	AAGNNNNNCTT	3 cut(s)	33, 315, 347
FaqI	GGGAC	2 cut(s)	340, 846
FatI	CATG	1 cut(s)	175
FauNDI	CATATG	1 cut(s)	433
FbaI	TGATCA	1 cut(s)	826
Fnu4HI	GCNGC	4 cut(s)	406, 558, 580, 762
FokI	GGATG	2 cut(s)	512, 874
FriOI	GRGCYC	2 cut(s)	129, 843
Fsp4HI	GCNGC	4 cut(s)	406, 558, 580, 762
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	4 cut(s)	406, 558, 580, 762
HaeIII	GGCC	3 cut(s)	492, 788, 942
HapII	CCGG	2 cut(s)	452, 939
HhaI	GCGC	1 cut(s)	766
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	4 cut(s)	368, 374, 505, 706
HpaII	CCGG	2 cut(s)	452, 939
HphI	GGTGA	5 cut(s)	12, 621, 651, 865, 992
Hpy188I	TCNGA	5 cut(s)	137, 346, 373, 679, 907
Hpy188III	TCNNGA	1 cut(s)	619
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	778, 816
HpyCH4III	ACNGT	5 cut(s)	49, 133, 355, 447, 592
HpyCH4V	TGCA	5 cut(s)	35, 391, 464, 582, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 647
HpyF3I	CTNAG	5 cut(s)	195, 258, 524, 678, 746
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	764
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	2 cut(s)	652, 826
LguI	GCTCTTC	1 cut(s)	848
LmnI	GCTCC	2 cut(s)	554, 995
Lsp1109I	GCAGC	4 cut(s)	417, 566, 569, 748
LweI	GCATC	2 cut(s)	96, 373
MabI	ACCWGGT	2 cut(s)	694, 976
MaeI	CTAG	1 cut(s)	411
MaeIII	GTNAC	5 cut(s)	178, 439, 502, 584, 627
MalI	GATC	2 cut(s)	654, 828
MboI	GATC	2 cut(s)	652, 826
MboII	GAAGA	7 cut(s)	9, 493, 600, 666, 698, 835, 838
MhlI	GDGCHC	4 cut(s)	129, 843, 1000, 1014
MluCI	AATT	5 cut(s)	240, 282, 398, 536, 1018
MlyI	GAGTC	2 cut(s)	499, 700
MnlI	CCTC	7 cut(s)	217, 220, 609, 777, 813, 976, 986
MseI	TTAA	5 cut(s)	152, 296, 401, 474, 540
MslI	CAYNNNNRTG	1 cut(s)	664
MspI	CCGG	2 cut(s)	452, 939
MspR9I	CCNGG	6 cut(s)	246, 452, 663, 696, 894, 978
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	5 cut(s)	246, 663, 696, 894, 978
MwoI	GCNNNNNNNGC	2 cut(s)	84, 647
NciI	CCSGG	1 cut(s)	452
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	2 cut(s)	652, 826
NlaIII	CATG	1 cut(s)	179
NmuCI	GTSAC	3 cut(s)	439, 502, 627
OliI	CACNNNNGTG	1 cut(s)	664
PciSI	GCTCTTC	1 cut(s)	848
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	368, 374
PflMI	CCANNNNNTGG	1 cut(s)	662
PkrI	GCNGC	4 cut(s)	407, 559, 581, 763
PleI	GAGTC	2 cut(s)	499, 700
PpsI	GAGTC	2 cut(s)	499, 700
PsiI	TTATAA	1 cut(s)	795
Psp124BI	GAGCTC	2 cut(s)	129, 843
Psp6I	CCWGG	5 cut(s)	244, 661, 694, 892, 976
PspGI	CCWGG	5 cut(s)	244, 661, 694, 892, 976
PspPI	GGNCC	1 cut(s)	941
PstI	CTGCAG	1 cut(s)	584
RsaI	GTAC	5 cut(s)	256, 449, 594, 720, 960
RsaNI	GTAC	5 cut(s)	255, 448, 593, 719, 959
RseI	CAYNNNNRTG	1 cut(s)	664
SacI	GAGCTC	2 cut(s)	129, 843
SapI	GCTCTTC	1 cut(s)	848
SaqAI	TTAA	5 cut(s)	152, 296, 401, 474, 540
SatI	GCNGC	4 cut(s)	406, 558, 580, 762
Sau3AI	GATC	2 cut(s)	652, 826
Sau96I	GGNCC	1 cut(s)	941
SchI	GAGTC	2 cut(s)	499, 700
ScrFI	CCNGG	6 cut(s)	246, 452, 663, 696, 894, 978
SduI	GDGCHC	4 cut(s)	129, 843, 1000, 1014
SexAI	ACCWGGT	2 cut(s)	694, 976
SfaNI	GCATC	2 cut(s)	96, 373
SfcI	CTRYAG	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	664
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	5 cut(s)	240, 282, 398, 536, 1018
SspMI	CTAG	1 cut(s)	411
SstI	GAGCTC	2 cut(s)	129, 843
StyD4I	CCNGG	6 cut(s)	244, 450, 661, 694, 892, 976
StyI	CCWWGG	2 cut(s)	273, 565
TaaI	ACNGT	5 cut(s)	49, 133, 355, 447, 592
TaqI	TCGA	1 cut(s)	618
TasI	AATT	5 cut(s)	240, 282, 398, 536, 1018
TatI	WGTACW	1 cut(s)	592
TfiI	GAWTC	2 cut(s)	368, 374
Tru1I	TTAA	5 cut(s)	152, 296, 401, 474, 540
Tru9I	TTAA	5 cut(s)	152, 296, 401, 474, 540
TscAI	CASTG	3 cut(s)	360, 450, 595
TseFI	GTSAC	3 cut(s)	439, 502, 627
TseI	GCWGC	4 cut(s)	405, 557, 579, 761
Tsp45I	GTSAC	3 cut(s)	439, 502, 627
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	3 cut(s)	360, 450, 595
Van91I	CCANNNNNTGG	1 cut(s)	662
XapI	RAATTY	1 cut(s)	536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	663
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.