Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013539

Physical Location & Seq

Genomic Coordinates Forward (+)

9597792 .. 9600032

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G114100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTTCTCTTCTTTCCTTCTCTGTTCCCAATTCAAAGATGATAAGAGCTTCTTCATCACAGTCTGTTTCTGCACCGACCGTTTCCGTGCCGGAGAACCTTACTGAAAAATTTGGGAGAAAGGGCATCAAATTCTTGGAGTCTGATAACATCCCCATTGTTGAACTCAGAGTCAGAAATGGCAGTTCATTAAGGCTTCAAATACCCAATGCTCATGTGACTTCATACAAGCCAAAGGTGTACTGGAAGGACGACGGCTTCCAAGAAGTTCTTTACACAATTCCAGGCAATGGAACAGATCCTAATTCTACCAAAGCCAAGGGAGGAATTGGTTTGGTCTTGAATGATGTATCAGAAGCAGGCTCCAAAGGCTCACTTGTTTCCACGTCTGAATGGACAGTAAAAGATGTTGATTCCGATTCCATCGATGCTCTCCAGGTTGAATTAAGCAGCACTAGTGGAACACTTGAAATAACCTATGTCGTCAGTTTATATCCGGTAAGCATGGCAACGGCTGTTATTGTGAGAAACAAAGGCCGGAAGCCAGTCACTCTGACCAATGCCATACTCAGCCATTTCAAGTTCAAAAGACGAAGCGGGGCAGCGATCCAAGGTCTCAAGGGCTGTGCTTACACTGCACTCCCTCCACTATCTTCTCCTTTTGAGATTTTGTCTCCTGCTGAAGCAATGAAAGCTGACACTCCAGGGTGGTTCGATTTTGGTTCTCAGCCTGAAGAAAAGCCAGGTTCTTGGACTCACCAAGATGTGCCTTTCACCATTTTGAAAAACAAGCTCAGCAGGGTTTATGCTGCCCCTCCTAAAGAGAGACTCAAGCCAATTTATAACACCCCACCTTCCAAATATGAAACACTGGATCAGGGGCGTGAGCTCTTCTACAGGGTGATACGCATGGGATTTGAGGATATCTACTTATCCAGCCCTGGTTCTTTCTATGAGAAATATGGGGAGGAGTATTTTATATGCACTGGCCCTGCTTCAATGCTGGTACCTGTGGTTGTCAAGCCTGGTGAGGATTGGAGAGGGGCACAAGTTATTGAACATGATAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

358

Amino Acids

39.21

Weight (kDa)

8.29

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64770 AT1G64770 AT1G64770
fragaria_vesca	FvH4_6g27680
malus_domestica	MD17G1264700.v1.1
prunus_persica	Prupe.3G114100_v2.0.a1
pyrus_communis	pycom17g26450
rosa_chinensis	RchiOBHm_Chr2g0130821
rosa_multiflora	Rmu_sc0031245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113540 Rroxscaffold_2G00113880
rosa_rugosa	Rorug02G0293000
rosa_samantha	Rh2AG344800 Rh2BG353200 Rh2CG331600 Rh2DG371000
rosa_wichuraiana	Rw0G012510 Rw2G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	843
Acc65I	GGTACC	1 cut(s)	1006
AccB1I	GGYRCC	1 cut(s)	1006
AccB7I	CCANNNNNTGG	1 cut(s)	290
AciI	CCGC	1 cut(s)	597
AclWI	GGATC	3 cut(s)	293, 601, 882
AcsI	RAATTY	2 cut(s)	110, 131
AcuI	CTGAAG	2 cut(s)	702, 753
AfaI	GTAC	2 cut(s)	242, 1008
AfiI	CCNNNNNNNGG	1 cut(s)	290
AhlI	ACTAGT	1 cut(s)	455
AjiI	CACGTC	1 cut(s)	387
AjnI	CCWGG	6 cut(s)	283, 435, 703, 742, 940, 1024
AluBI	AGCT	4 cut(s)	50, 695, 793, 889
AluI	AGCT	4 cut(s)	50, 695, 793, 889
Alw21I	GWGCWC	1 cut(s)	891
Alw26I	GTCTC	3 cut(s)	620, 678, 820
AlwI	GGATC	3 cut(s)	293, 601, 882
AoxI	GGCC	2 cut(s)	535, 988
ApeKI	GCWGC	3 cut(s)	450, 602, 809
ApoI	RAATTY	2 cut(s)	110, 131
Asp718I	GGTACC	1 cut(s)	1006
AspS9I	GGNCC	1 cut(s)	989
AsuHPI	GGTGA	4 cut(s)	749, 766, 913, 1040
BaeGI	GKGCMC	1 cut(s)	1048
BanI	GGYRCC	1 cut(s)	1006
BanII	GRGCYC	1 cut(s)	891
Bbv12I	GWGCWC	1 cut(s)	891
BbvI	GCAGC	3 cut(s)	462, 614, 796
BccI	CCATC	1 cut(s)	431
BceAI	ACGGC	2 cut(s)	271, 528
BciT130I	CCWGG	6 cut(s)	285, 437, 705, 744, 942, 1026
BcoDI	GTCTC	3 cut(s)	620, 678, 820
BcuI	ACTAGT	1 cut(s)	455
BfaI	CTAG	1 cut(s)	456
BfmI	CTRYAG	1 cut(s)	895
BisI	GCNGC	3 cut(s)	451, 603, 810
BlpI	GCTNAGC	1 cut(s)	794
BlsI	GCNGC	3 cut(s)	452, 604, 811
Bme1390I	CCNGG	6 cut(s)	285, 437, 705, 744, 942, 1026
BmgBI	CACGTC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	989
BmiI	GGNNCC	2 cut(s)	364, 1008
BmrFI	CCNGG	6 cut(s)	285, 437, 705, 744, 942, 1026
BmsI	GCATC	2 cut(s)	135, 418
BpmI	CTGGAG	2 cut(s)	419, 687
Bpu1102I	GCTNAGC	1 cut(s)	794
BpuEI	CTTGAG	2 cut(s)	602, 815
Bsa29I	ATCGAT	1 cut(s)	426
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	4 cut(s)	318, 610, 704, 940
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	4 cut(s)	248, 545, 876, 991
Bse3DI	GCAATG	2 cut(s)	295, 693
BseBI	CCWGG	6 cut(s)	285, 437, 705, 744, 942, 1026
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	4 cut(s)	318, 610, 704, 940
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	2 cut(s)	295, 693
BseMII	CTCAG	4 cut(s)	181, 583, 740, 808
BseNI	ACTGG	4 cut(s)	248, 545, 876, 991
BseRI	GAGGAG	1 cut(s)	983
BseSI	GKGCMC	1 cut(s)	1048
BseXI	GCAGC	3 cut(s)	462, 614, 796
BsgI	GTGCAG	2 cut(s)	57, 621
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	537, 990
BshNI	GGYRCC	1 cut(s)	1006
BshVI	ATCGAT	1 cut(s)	426
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	891
BsiSI	CCGG	3 cut(s)	92, 497, 538
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	3 cut(s)	620, 678, 820
BsnI	GGCC	2 cut(s)	537, 990
Bso31I	GGTCTC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	891, 1048
Bsp143I	GATC	3 cut(s)	298, 606, 874
Bsp1720I	GCTNAGC	1 cut(s)	794
BspACI	CCGC	1 cut(s)	597
BspANI	GGCC	2 cut(s)	537, 990
BspCNI	CTCAG	4 cut(s)	180, 582, 739, 807
BspDI	ATCGAT	1 cut(s)	426
BspLI	GGNNCC	2 cut(s)	364, 1008
BspPI	GGATC	3 cut(s)	293, 601, 882
BspQI	GCTCTTC	1 cut(s)	896
BspT107I	GGYRCC	1 cut(s)	1006
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	2 cut(s)	295, 693
BsrI	ACTGG	4 cut(s)	248, 545, 876, 991
BssECI	CCNNGG	4 cut(s)	318, 610, 704, 940
BssMI	GATC	3 cut(s)	298, 606, 874
BssT1I	CCWWGG	2 cut(s)	318, 610
Bst2UI	CCWGG	6 cut(s)	285, 437, 705, 744, 942, 1026
Bst4CI	ACNGT	3 cut(s)	63, 82, 400
Bst6I	CTCTTC	2 cut(s)	15, 896
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	4 cut(s)	167, 569, 726, 794
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	3 cut(s)	301, 609, 877
BstMAI	GTCTC	3 cut(s)	620, 678, 820
BstMBI	GATC	3 cut(s)	298, 606, 874
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	3 cut(s)	369, 635, 692
BstNI	CCWGG	6 cut(s)	285, 437, 705, 744, 942, 1026
BstSCI	CCNGG	6 cut(s)	283, 435, 703, 742, 940, 1024
BstSFI	CTRYAG	1 cut(s)	895
BstSLI	GKGCMC	1 cut(s)	1048
BstV1I	GCAGC	3 cut(s)	462, 614, 796
BstX2I	RGATCY	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	750
BstYI	RGATCY	1 cut(s)	298
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	2 cut(s)	537, 990
BsuTUI	ATCGAT	1 cut(s)	426
BtrI	CACGTC	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	3 cut(s)	633, 869, 984
Cac8I	GCNNGC	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	989
ClaI	ATCGAT	1 cut(s)	426
Csp6I	GTAC	2 cut(s)	241, 1007
CviAII	CATG	4 cut(s)	215, 505, 910, 1061
CviQI	GTAC	2 cut(s)	241, 1007
DdeI	CTNAG	4 cut(s)	167, 569, 726, 794
DpnI	GATC	3 cut(s)	300, 608, 876
DpnII	GATC	3 cut(s)	298, 606, 874
Eam1104I	CTCTTC	2 cut(s)	15, 896
EarI	CTCTTC	2 cut(s)	15, 896
Ecl136II	GAGCTC	1 cut(s)	889
Eco130I	CCWWGG	2 cut(s)	318, 610
Eco24I	GRGCYC	1 cut(s)	891
Eco31I	GGTCTC	1 cut(s)	620
Eco32I	GATATC	1 cut(s)	925
Eco53kI	GAGCTC	1 cut(s)	889
Eco57I	CTGAAG	2 cut(s)	702, 753
EcoICRI	GAGCTC	1 cut(s)	889
EcoRII	CCWGG	6 cut(s)	283, 435, 703, 742, 940, 1024
EcoRV	GATATC	1 cut(s)	925
EcoT14I	CCWWGG	2 cut(s)	318, 610
EcoT38I	GRGCYC	1 cut(s)	891
ErhI	CCWWGG	2 cut(s)	318, 610
FaeI	CATG	4 cut(s)	218, 508, 913, 1064
FalI	AAGNNNNNCTT	6 cut(s)	37, 69, 255, 287, 360, 392
FatI	CATG	4 cut(s)	214, 504, 909, 1060
FauI	CCCGC	1 cut(s)	590
Fnu4HI	GCNGC	3 cut(s)	451, 603, 810
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	891
Fsp4HI	GCNGC	3 cut(s)	451, 603, 810
FspBI	CTAG	1 cut(s)	456
GluI	GCNGC	3 cut(s)	451, 603, 810
GsuI	CTGGAG	2 cut(s)	419, 687
HaeIII	GGCC	2 cut(s)	537, 990
HapII	CCGG	3 cut(s)	92, 497, 538
Hin1II	CATG	4 cut(s)	218, 508, 913, 1064
HinfI	GANTC	6 cut(s)	140, 171, 413, 419, 754, 828
HpaII	CCGG	3 cut(s)	92, 497, 538
HphI	GGTGA	4 cut(s)	749, 766, 913, 1040
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	7 cut(s)	145, 170, 176, 355, 391, 418, 555
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	28, 241, 864
HpyCH4III	ACNGT	3 cut(s)	63, 82, 400
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	3 cut(s)	74, 638, 984
HpyF10VI	GCNNNNNNNGC	3 cut(s)	369, 635, 692
HpyF3I	CTNAG	4 cut(s)	167, 569, 726, 794
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	4 cut(s)	218, 508, 913, 1064
KpnI	GGTACC	1 cut(s)	1010
Kzo9I	GATC	3 cut(s)	298, 606, 874
LguI	GCTCTTC	1 cut(s)	896
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	3 cut(s)	462, 614, 796
LweI	GCATC	2 cut(s)	135, 418
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	2 cut(s)	217, 547
MalI	GATC	3 cut(s)	300, 608, 876
MboI	GATC	3 cut(s)	298, 606, 874
MboII	GAAGA	4 cut(s)	45, 645, 746, 883
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	891, 1048
MluCI	AATT	9 cut(s)	31, 110, 131, 279, 304, 327, 443, 837, 1066
MlyI	GAGTC	4 cut(s)	149, 180, 748, 822
MnlI	CCTC	7 cut(s)	317, 654, 825, 913, 961, 1024, 1034
MseI	TTAA	2 cut(s)	191, 446
MslI	CAYNNNNRTG	1 cut(s)	762
MspI	CCGG	3 cut(s)	92, 497, 538
MspR9I	CCNGG	6 cut(s)	285, 437, 705, 744, 942, 1026
MvaI	CCWGG	6 cut(s)	285, 437, 705, 744, 942, 1026
MwoI	GCNNNNNNNGC	3 cut(s)	369, 635, 692
NdeII	GATC	3 cut(s)	298, 606, 874
NlaIII	CATG	4 cut(s)	218, 508, 913, 1064
NlaIV	GGNNCC	2 cut(s)	364, 1008
NmuCI	GTSAC	2 cut(s)	217, 547
PciSI	GCTCTTC	1 cut(s)	896
PfeI	GAWTC	2 cut(s)	413, 419
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	3 cut(s)	452, 604, 811
PleI	GAGTC	4 cut(s)	148, 179, 748, 822
PpsI	GAGTC	4 cut(s)	148, 179, 748, 822
PsiI	TTATAA	1 cut(s)	843
Psp124BI	GAGCTC	1 cut(s)	891
Psp6I	CCWGG	6 cut(s)	283, 435, 703, 742, 940, 1024
PspGI	CCWGG	6 cut(s)	283, 435, 703, 742, 940, 1024
PspN4I	GGNNCC	2 cut(s)	364, 1008
PspPI	GGNCC	1 cut(s)	989
PsuI	RGATCY	1 cut(s)	298
RsaI	GTAC	2 cut(s)	242, 1008
RsaNI	GTAC	2 cut(s)	241, 1007
RseI	CAYNNNNRTG	1 cut(s)	762
SacI	GAGCTC	1 cut(s)	891
SapI	GCTCTTC	1 cut(s)	896
SaqAI	TTAA	2 cut(s)	191, 446
SatI	GCNGC	3 cut(s)	451, 603, 810
Sau3AI	GATC	3 cut(s)	298, 606, 874
Sau96I	GGNCC	1 cut(s)	989
SchI	GAGTC	4 cut(s)	149, 180, 748, 822
ScrFI	CCNGG	6 cut(s)	285, 437, 705, 744, 942, 1026
SduI	GDGCHC	2 cut(s)	891, 1048
SfaNI	GCATC	2 cut(s)	135, 418
SfcI	CTRYAG	1 cut(s)	895
SmiMI	CAYNNNNRTG	1 cut(s)	762
SmlI	CTYRAG	2 cut(s)	617, 830
SmoI	CTYRAG	2 cut(s)	617, 830
SpeI	ACTAGT	1 cut(s)	455
Sse9I	AATT	9 cut(s)	31, 110, 131, 279, 304, 327, 443, 837, 1066
SsiI	CCGC	1 cut(s)	597
SspMI	CTAG	1 cut(s)	456
SstI	GAGCTC	1 cut(s)	891
StyD4I	CCNGG	6 cut(s)	283, 435, 703, 742, 940, 1024
StyI	CCWWGG	2 cut(s)	318, 610
TaaI	ACNGT	3 cut(s)	63, 82, 400
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	2 cut(s)	426, 714
TasI	AATT	9 cut(s)	31, 110, 131, 279, 304, 327, 443, 837, 1066
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	413, 419
Tru1I	TTAA	2 cut(s)	191, 446
Tru9I	TTAA	2 cut(s)	191, 446
TscAI	CASTG	3 cut(s)	640, 876, 991
TseFI	GTSAC	2 cut(s)	217, 547
TseI	GCWGC	3 cut(s)	450, 602, 809
Tsp45I	GTSAC	2 cut(s)	217, 547
TspDTI	ATGAA	5 cut(s)	45, 177, 213, 704, 879
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	3 cut(s)	640, 876, 991
Van91I	CCANNNNNTGG	1 cut(s)	290
XapI	RAATTY	2 cut(s)	110, 131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	240
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.