Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013539

Physical Location & Seq

Genomic Coordinates Forward (+)

21353833 .. 21356835

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCTTCTCTTCTTTCCTTCTCTGTTACCAACTCAAAGATGATGATGGTAAGAGCTGCTTCACCATTAACTTCTTCTCCGACGACTATTACCGTGCCAGAGAGCCTTACTGACAGATTTGGCAGAAAAGGTATCAACTTCGTGGAGTATGACAACACTCCATTTGTTGAGCTCACAGTCAGAAATGGCAGTTCATTAAAGCTTCAGATACCCAATGCTCATGTGACTTCGTATAAGCCAAAGGTGTATTGGAAAGAAGATGGCTTTGAAGAGGTTCTTTACACAATTCCAGGTAAAGGAACTGAGCCTAACAAAGCCAAGGGGGGTATTGGTTTGGTCTTGAATGATGTATCACAAGCAGGTTCTAAAGGGTCACTTGTATCCACTTCTGAATGGACAGTGAAAGATGTTGATTCGGATTCCATTGATGCTGTGCAGGTTGAATTAAGCAGCACTAGTGGAAGTCTTGATATAACATATGTTGTCACACTATACCCAGTAAGCATTGCAACAGCAGTTAAAGTGAAGAACAAAGGCAGAAAGGATGTGACCCTAACAAGTGCTATACTCAGCCATTTCAAATTTAAGAGACGAAGTGGAGCAGCAATCCAAGGTCTCAAGGGCTGCAGTTACACTGTACAGCCTCCCCTATCTTCTCCTTTCGAGATTTTGTCACCGAATGAAGCACTGAAAGCTGATCCATCTCCTGGGTGGTTCTCTTCTGAGCCTGAAGAAAAACCAGGTTCTTGGACTCAACAAGATGTACCTTACACCATTTTGAAAAACAAGCTTAGCAGAGTTTATGCTGCGCCTCCTAAAGAGAGACTGAAGCCCATTTACAACACTCCTCCTTCAAAATATGAGACACTTGATCAGGGACGAGAGCTCTTCTTCAGGGTGATAAGGATGGGATTTGAGGACATCTACTTATCCAGCCCTGGTTCTTTGTCTGAGAAATATGGTAATGAGTATTTCATATGCACTGGCCCTGCTTCCATGTTAGTACCTGTGGTTGTGAAACCTGTTCTGGCTGGTAAGGCCGTAAGCGTTACTCTTAACCAATTGCTTCTTAGATGGTTCTCTTCCCCCGCTTCTTTCTGTGCGTTGAAATCCCCCATTGTTTCGTCCGACCCGGATGACCCAATAGCCTTTCGAATGCCTAATTTTACACCCTCTCATTCTCACACACTTATAAGGCAGCGGCACAGAGAGAATGCCCACAACAGCACCTCTCCCCTGTCTTTGAAATCTCGCCTCCAATTCCGGGTTGTGGTTTCTGTTAGCAAGTCATTATGTGTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

435

Amino Acids

47.64

Weight (kDa)

9.35

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64770 AT1G64770 AT1G64770
fragaria_vesca	FvH4_6g27680
malus_domestica	MD17G1264700.v1.1
prunus_persica	Prupe.3G114100_v2.0.a1
pyrus_communis	pycom17g26450
rosa_chinensis	RchiOBHm_Chr2g0130821
rosa_multiflora	Rmu_sc0031245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113540 Rroxscaffold_2G00113880
rosa_rugosa	Rorug02G0293000
rosa_samantha	Rh2AG344800 Rh2BG353200 Rh2CG331600 Rh2DG371000
rosa_wichuraiana	Rw0G012510 Rw2G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1193
Acc36I	ACCTGC	2 cut(s)	350, 427
AccB7I	CCANNNNNTGG	1 cut(s)	707
AciI	CCGC	2 cut(s)	1089, 1201
AclWI	GGATC	1 cut(s)	692
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	4 cut(s)	188, 750, 848, 877
AfaI	GTAC	3 cut(s)	639, 765, 1005
AfiI	CCNNNNNNNGG	4 cut(s)	296, 707, 1264, 1270
AgsI	TTSAA	8 cut(s)	269, 343, 443, 580, 781, 855, 1108, 1246
AhlI	ACTAGT	1 cut(s)	455
AjnI	CCWGG	4 cut(s)	289, 706, 739, 937
AluBI	AGCT	6 cut(s)	56, 172, 202, 695, 790, 886
AluI	AGCT	6 cut(s)	56, 172, 202, 695, 790, 886
Alw21I	GWGCWC	2 cut(s)	174, 888
Alw26I	GTCTC	4 cut(s)	583, 620, 817, 857
AlwI	GGATC	1 cut(s)	692
AoxI	GGCC	2 cut(s)	985, 1038
ApeKI	GCWGC	6 cut(s)	56, 450, 602, 624, 806, 1198
ApoI	RAATTY	1 cut(s)	581
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	811
AspS9I	GGNCC	1 cut(s)	986
AsuC2I	CCSGG	2 cut(s)	1133, 1265
AsuHPI	GGTGA	3 cut(s)	54, 666, 910
AsuII	TTCGAA	1 cut(s)	1153
BanII	GRGCYC	2 cut(s)	174, 888
BarI	GAAGNNNNNNTAC	2 cut(s)	821, 853
Bbv12I	GWGCWC	2 cut(s)	174, 888
BbvI	GCAGC	6 cut(s)	43, 462, 611, 614, 793, 1210
BccI	CCATC	5 cut(s)	40, 254, 709, 901, 1068
BceAI	ACGGC	1 cut(s)	1025
BciT130I	CCWGG	4 cut(s)	291, 708, 741, 939
BciVI	GTATCC	1 cut(s)	391
BclI	TGATCA	1 cut(s)	871
BcnI	CCSGG	2 cut(s)	1133, 1265
BcoDI	GTCTC	4 cut(s)	583, 620, 817, 857
BcuI	ACTAGT	1 cut(s)	455
BfaI	CTAG	1 cut(s)	456
BfmI	CTRYAG	1 cut(s)	625
BfuAI	ACCTGC	2 cut(s)	350, 427
BfuI	GTATCC	1 cut(s)	391
BisI	GCNGC	7 cut(s)	57, 451, 603, 625, 807, 1199, 1202
BlpI	GCTNAGC	1 cut(s)	791
BlsI	GCNGC	7 cut(s)	58, 452, 604, 626, 808, 1200, 1203
Bme1390I	CCNGG	6 cut(s)	291, 708, 741, 939, 1133, 1265
BmgT120I	GGNCC	1 cut(s)	986
BmrFI	CCNGG	6 cut(s)	291, 708, 741, 939, 1133, 1265
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	791
Bpu14I	TTCGAA	1 cut(s)	1153
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	2 cut(s)	1133, 1265
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	4 cut(s)	318, 610, 707, 937
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	4 cut(s)	296, 707, 1264, 1270
Bse1I	ACTGG	2 cut(s)	497, 988
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	4 cut(s)	291, 708, 741, 939
BseDI	CCNNGG	4 cut(s)	318, 610, 707, 937
BseGI	GGATG	3 cut(s)	550, 912, 1141
BseLI	CCNNNNNNNGG	4 cut(s)	296, 707, 1264, 1270
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	4 cut(s)	294, 583, 714, 942
BseNI	ACTGG	2 cut(s)	497, 988
BseRI	GAGGAG	1 cut(s)	837
BseXI	GCAGC	6 cut(s)	43, 462, 611, 614, 793, 1210
BsgI	GTGCAG	1 cut(s)	455
BshFI	GGCC	2 cut(s)	987, 1040
BsiHKAI	GWGCWC	2 cut(s)	174, 888
BsiSI	CCGG	2 cut(s)	1133, 1264
BslFI	GGGAC	1 cut(s)	891
BslI	CCNNNNNNNGG	4 cut(s)	296, 707, 1264, 1270
BsmAI	GTCTC	4 cut(s)	583, 620, 817, 857
BsmBI	CGTCTC	1 cut(s)	583
BsmFI	GGGAC	1 cut(s)	891
BsmI	GAATGC	2 cut(s)	1161, 1219
BsnI	GGCC	2 cut(s)	987, 1040
Bso31I	GGTCTC	1 cut(s)	620
Bsp119I	TTCGAA	1 cut(s)	1153
Bsp1286I	GDGCHC	2 cut(s)	174, 888
Bsp1407I	TGTACA	1 cut(s)	637
Bsp143I	GATC	2 cut(s)	697, 871
Bsp1720I	GCTNAGC	1 cut(s)	791
BspACI	CCGC	2 cut(s)	1089, 1201
BspANI	GGCC	2 cut(s)	987, 1040
BspCNI	CTCAG	4 cut(s)	295, 582, 715, 943
BspMAI	CTGCAG	1 cut(s)	629
BspMI	ACCTGC	2 cut(s)	350, 427
BspPI	GGATC	1 cut(s)	692
BspQI	GCTCTTC	1 cut(s)	893
BspT104I	TTCGAA	1 cut(s)	1153
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	504
BsrGI	TGTACA	1 cut(s)	637
BsrI	ACTGG	2 cut(s)	497, 988
BssECI	CCNNGG	4 cut(s)	318, 610, 707, 937
BssMI	GATC	2 cut(s)	697, 871
BssT1I	CCWWGG	2 cut(s)	318, 610
Bst2UI	CCWGG	4 cut(s)	291, 708, 741, 939
Bst4CI	ACNGT	4 cut(s)	94, 178, 400, 637
Bst6I	CTCTTC	5 cut(s)	15, 264, 724, 893, 1087
BstAUI	TGTACA	1 cut(s)	637
BstBI	TTCGAA	1 cut(s)	1153
BstDEI	CTNAG	6 cut(s)	303, 569, 723, 791, 951, 1070
BstF5I	GGATG	3 cut(s)	550, 912, 1141
BstHHI	GCGC	1 cut(s)	811
BstKTI	GATC	2 cut(s)	700, 874
BstMAI	GTCTC	4 cut(s)	583, 620, 817, 857
BstMBI	GATC	2 cut(s)	697, 871
BstMWI	GCNNNNNNNGC	2 cut(s)	692, 1037
BstNI	CCWGG	4 cut(s)	291, 708, 741, 939
BstSCI	CCNGG	6 cut(s)	289, 706, 739, 937, 1131, 1263
BstSFI	CTRYAG	1 cut(s)	625
BstV1I	GCAGC	6 cut(s)	43, 462, 611, 614, 793, 1210
BstXI	CCANNNNNNTGG	1 cut(s)	747
BsuI	GTATCC	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	987, 1040
BtsCI	GGATG	3 cut(s)	550, 912, 1141
BtsIMutI	CAGTG	4 cut(s)	405, 633, 686, 981
BveI	ACCTGC	2 cut(s)	350, 427
CfoI	GCGC	1 cut(s)	811
Cfr13I	GGNCC	1 cut(s)	986
CsiI	ACCWGGT	1 cut(s)	739
Csp6I	GTAC	3 cut(s)	638, 764, 1004
CviAII	CATG	2 cut(s)	221, 997
CviQI	GTAC	3 cut(s)	638, 764, 1004
DdeI	CTNAG	6 cut(s)	303, 569, 723, 791, 951, 1070
DpnI	GATC	2 cut(s)	699, 873
DpnII	GATC	2 cut(s)	697, 871
Eam1104I	CTCTTC	5 cut(s)	15, 264, 724, 893, 1087
EarI	CTCTTC	5 cut(s)	15, 264, 724, 893, 1087
Ecl136II	GAGCTC	2 cut(s)	172, 886
Eco130I	CCWWGG	2 cut(s)	318, 610
Eco24I	GRGCYC	2 cut(s)	174, 888
Eco31I	GGTCTC	1 cut(s)	620
Eco53kI	GAGCTC	2 cut(s)	172, 886
Eco57I	CTGAAG	4 cut(s)	188, 750, 848, 877
EcoICRI	GAGCTC	2 cut(s)	172, 886
EcoRII	CCWGG	4 cut(s)	289, 706, 739, 937
EcoT14I	CCWWGG	2 cut(s)	318, 610
EcoT38I	GRGCYC	2 cut(s)	174, 888
ErhI	CCWWGG	2 cut(s)	318, 610
Esp3I	CGTCTC	1 cut(s)	583
FaeI	CATG	2 cut(s)	224, 1000
FalI	AAGNNNNNCTT	6 cut(s)	43, 75, 261, 293, 360, 392
FaqI	GGGAC	1 cut(s)	891
FatI	CATG	2 cut(s)	220, 996
FauI	CCCGC	1 cut(s)	1096
FauNDI	CATATG	2 cut(s)	478, 977
FbaI	TGATCA	1 cut(s)	871
Fnu4HI	GCNGC	7 cut(s)	57, 451, 603, 625, 807, 1199, 1202
FokI	GGATG	3 cut(s)	557, 919, 1148
FriOI	GRGCYC	2 cut(s)	174, 888
Fsp4HI	GCNGC	7 cut(s)	57, 451, 603, 625, 807, 1199, 1202
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	810
GluI	GCNGC	7 cut(s)	57, 451, 603, 625, 807, 1199, 1202
HaeIII	GGCC	2 cut(s)	987, 1040
HapII	CCGG	2 cut(s)	1133, 1264
HhaI	GCGC	1 cut(s)	811
Hin1II	CATG	2 cut(s)	224, 1000
Hin6I	GCGC	1 cut(s)	809
HinP1I	GCGC	1 cut(s)	809
HindIII	AAGCTT	2 cut(s)	200, 788
HinfI	GANTC	3 cut(s)	413, 419, 751
HpaII	CCGG	2 cut(s)	1133, 1264
HphI	GGTGA	3 cut(s)	54, 666, 910
Hpy188I	TCNGA	8 cut(s)	81, 182, 207, 391, 418, 724, 952, 1129
Hpy188III	TCNNGA	3 cut(s)	340, 467, 664
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	28, 861
HpyCH4III	ACNGT	4 cut(s)	94, 178, 400, 637
HpyCH4V	TGCA	4 cut(s)	436, 509, 627, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	692, 1037
HpyF3I	CTNAG	6 cut(s)	303, 569, 723, 791, 951, 1070
Hsp92II	CATG	2 cut(s)	224, 1000
HspAI	GCGC	1 cut(s)	809
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	2 cut(s)	697, 871
LguI	GCTCTTC	1 cut(s)	893
LmnI	GCTCC	1 cut(s)	599
Lsp1109I	GCAGC	6 cut(s)	43, 462, 611, 614, 793, 1210
LweI	GCATC	1 cut(s)	418
MabI	ACCWGGT	1 cut(s)	739
MaeI	CTAG	1 cut(s)	456
MaeIII	GTNAC	8 cut(s)	25, 223, 372, 484, 547, 629, 672, 1048
MalI	GATC	2 cut(s)	699, 873
MboI	GATC	2 cut(s)	697, 871
MfeI	CAATTG	1 cut(s)	1061
MhlI	GDGCHC	2 cut(s)	174, 888
MluCI	AATT	6 cut(s)	285, 443, 581, 1061, 1162, 1259
MlyI	GAGTC	1 cut(s)	745
MmeI	TCCRAC	2 cut(s)	104, 1152
MnlI	CCTC	8 cut(s)	265, 654, 822, 858, 910, 1183, 1240, 1265
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	6 cut(s)	68, 197, 446, 519, 585, 1056
MspA1I	CMGCKG	1 cut(s)	1201
MspI	CCGG	2 cut(s)	1133, 1264
MspR9I	CCNGG	6 cut(s)	291, 708, 741, 939, 1133, 1265
MunI	CAATTG	1 cut(s)	1061
Mva1269I	GAATGC	2 cut(s)	1161, 1219
MvaI	CCWGG	4 cut(s)	291, 708, 741, 939
MwoI	GCNNNNNNNGC	2 cut(s)	692, 1037
NciI	CCSGG	2 cut(s)	1133, 1265
NdeI	CATATG	2 cut(s)	478, 977
NdeII	GATC	2 cut(s)	697, 871
NlaIII	CATG	2 cut(s)	224, 1000
NmuCI	GTSAC	5 cut(s)	223, 372, 484, 547, 672
NspV	TTCGAA	1 cut(s)	1153
PciSI	GCTCTTC	1 cut(s)	893
PctI	GAATGC	2 cut(s)	1161, 1219
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	413, 419
PflMI	CCANNNNNTGG	1 cut(s)	707
PkrI	GCNGC	7 cut(s)	58, 452, 604, 626, 808, 1200, 1203
PleI	GAGTC	1 cut(s)	745
PpsI	GAGTC	1 cut(s)	745
PsiI	TTATAA	1 cut(s)	1193
Psp124BI	GAGCTC	2 cut(s)	174, 888
Psp6I	CCWGG	4 cut(s)	289, 706, 739, 937
PspGI	CCWGG	4 cut(s)	289, 706, 739, 937
PspPI	GGNCC	1 cut(s)	986
PstI	CTGCAG	1 cut(s)	629
RsaI	GTAC	3 cut(s)	639, 765, 1005
RsaNI	GTAC	3 cut(s)	638, 764, 1004
SacI	GAGCTC	2 cut(s)	174, 888
SapI	GCTCTTC	1 cut(s)	893
SaqAI	TTAA	6 cut(s)	68, 197, 446, 519, 585, 1056
SatI	GCNGC	7 cut(s)	57, 451, 603, 625, 807, 1199, 1202
Sau3AI	GATC	2 cut(s)	697, 871
Sau96I	GGNCC	1 cut(s)	986
SchI	GAGTC	1 cut(s)	745
ScrFI	CCNGG	6 cut(s)	291, 708, 741, 939, 1133, 1265
SduI	GDGCHC	2 cut(s)	174, 888
SexAI	ACCWGGT	1 cut(s)	739
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	625
SfuI	TTCGAA	1 cut(s)	1153
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SpeI	ACTAGT	1 cut(s)	455
Sse9I	AATT	6 cut(s)	285, 443, 581, 1061, 1162, 1259
SsiI	CCGC	2 cut(s)	1089, 1201
SspMI	CTAG	1 cut(s)	456
SstI	GAGCTC	2 cut(s)	174, 888
StyD4I	CCNGG	6 cut(s)	289, 706, 739, 937, 1131, 1263
StyI	CCWWGG	2 cut(s)	318, 610
TaaI	ACNGT	4 cut(s)	94, 178, 400, 637
TaqI	TCGA	2 cut(s)	663, 1153
TasI	AATT	6 cut(s)	285, 443, 581, 1061, 1162, 1259
TatI	WGTACW	1 cut(s)	637
TauI	GCSGC	1 cut(s)	1204
TfiI	GAWTC	2 cut(s)	413, 419
Tru1I	TTAA	6 cut(s)	68, 197, 446, 519, 585, 1056
Tru9I	TTAA	6 cut(s)	68, 197, 446, 519, 585, 1056
TscAI	CASTG	4 cut(s)	405, 640, 693, 988
TseFI	GTSAC	5 cut(s)	223, 372, 484, 547, 672
TseI	GCWGC	6 cut(s)	56, 450, 602, 624, 806, 1198
Tsp45I	GTSAC	5 cut(s)	223, 372, 484, 547, 672
TspDTI	ATGAA	3 cut(s)	183, 696, 964
TspRI	CASTG	4 cut(s)	405, 640, 693, 988
Van91I	CCANNNNNTGG	1 cut(s)	707
XapI	RAATTY	1 cut(s)	581
XcmI	CCANNNNNNNNNTGG	2 cut(s)	246, 708
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.