Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013539

Physical Location & Seq

Genomic Coordinates Reverse (-)

39652505 .. 39654756

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGATGATAAGAGCTTCTTCACCATCAACTTCTGCAACGACGAGTACCGTGCCAAAGAGCCTTACTGACAGATTTGGCAGAAAAGGCATCAAGTTCGTGGAGTATGACAACACTCCATTTGTTGAGCTCACAGTCAGAAATAGCAGTTCATTAAAGCTTCAAATACCGAATGCTCATGTAACTTCGTATAAGCCAAAGGTTTATTGGAAAGACGATGGCTTTGAGGAGGTTCTTTACACAATTCCAGGTAAAGGAACCGAGCCTAACAAAGCCAAGGGGGAGTTGGCCGGTTCTAAAGGGACACTTGTATCCACTTCTGAATGGACAGTGAAAGATGTTGATTCGGATTCCATTGATGCTATGCAGAACAAAGGCATAAAGGATGCAACTCTAACAAGTGCTATACTCAGCCATTTTAAATTTAAGAGACGAAGTGGAGCAGCAATCCAAGGTCTCAAGGGCTGCAGTTACACTGTACAACCTCCACTATCTTCTCCTTTCGAGATTTTGTCATCAAACGAAGCATTGAAAGCTGATCCATCACCTGGGTGGTTCTCTTCTAAGCCTGAAGAAAAACCAGGTTCTTGGACTCAACAAGATGTACCTTTCACCATTTTGGAAAAAAAGCTCAGCAGAGTTTATTCTGCGCCTCCTAAAGAGAGACTAAAGGCCATTTATAACACCCCTCCTTCAAAATATCATACACTTGATCAGGTGTTCCTTTATGTCATTGATCGTGCGTACATGATGAACAAGCAGCTAGCTAGGAACACAATCACCTTCTGTGTTGTATGGATTGTTGCCATGAAAAAGGCCAGGAGAGGGAGAAAAAATTTGGACAATGAGTTACGTTTACTAAACTGTGTGGGGACGAGAATGGCGTACCCACTTGACCTACCTCGACTCACCTATTGCAGTCCCTACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

34.62

Weight (kDa)

9.59

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64770 AT1G64770 AT1G64770
fragaria_vesca	FvH4_6g27680
malus_domestica	MD17G1264700.v1.1
prunus_persica	Prupe.3G114100_v2.0.a1
pyrus_communis	pycom17g26450
rosa_chinensis	RchiOBHm_Chr2g0130821
rosa_multiflora	Rmu_sc0031245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113540 Rroxscaffold_2G00113880
rosa_rugosa	Rorug02G0293000
rosa_samantha	Rh2AG344800 Rh2BG353200 Rh2CG331600 Rh2DG371000
rosa_wichuraiana	Rw0G012510 Rw2G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	678
AccB7I	CCANNNNNTGG	1 cut(s)	545
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	419, 832
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	5 cut(s)	46, 477, 603, 743, 884
AfiI	CCNNNNNNNGG	3 cut(s)	251, 545, 822
AgsI	TTSAA	3 cut(s)	161, 529, 693
AjnI	CCWGG	4 cut(s)	244, 544, 577, 815
AleI	CACNNNNGTG	1 cut(s)	547
AluBI	AGCT	7 cut(s)	14, 127, 157, 533, 628, 760, 764
AluI	AGCT	7 cut(s)	14, 127, 157, 533, 628, 760, 764
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	3 cut(s)	421, 458, 655
AlwI	GGATC	1 cut(s)	530
AoxI	GGCC	3 cut(s)	285, 669, 813
ApeKI	GCWGC	3 cut(s)	440, 462, 757
ApoI	RAATTY	2 cut(s)	419, 832
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspLEI	GCGC	1 cut(s)	649
AsuHPI	GGTGA	5 cut(s)	12, 534, 601, 769, 898
AsuNHI	GCTAGC	1 cut(s)	760
BaeI	ACNNNNGTAYC	2 cut(s)	291, 324
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	449, 452, 769
BccI	CCATC	3 cut(s)	31, 209, 547
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 76, 110
BciT130I	CCWGG	4 cut(s)	246, 546, 579, 817
BciVI	GTATCC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	3 cut(s)	421, 458, 655
BfaI	CTAG	2 cut(s)	761, 765
BfmI	CTRYAG	1 cut(s)	463
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	3 cut(s)	441, 463, 758
BlpI	GCTNAGC	1 cut(s)	629
BlsI	GCNGC	3 cut(s)	442, 464, 759
Bme1390I	CCNGG	4 cut(s)	246, 546, 579, 817
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	4 cut(s)	246, 546, 579, 817
BmsI	GCATC	3 cut(s)	96, 346, 373
BmtI	GCTAGC	1 cut(s)	764
Bpu1102I	GCTNAGC	1 cut(s)	629
BpuEI	CTTGAG	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	273, 448, 545
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 545, 822
Bse118I	RCCGGY	1 cut(s)	287
BseBI	CCWGG	4 cut(s)	246, 546, 579, 817
BseDI	CCNNGG	3 cut(s)	273, 448, 545
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	3 cut(s)	251, 545, 822
BseMII	CTCAG	2 cut(s)	421, 643
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	3 cut(s)	449, 452, 769
BshFI	GGCC	3 cut(s)	287, 671, 815
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	3 cut(s)	313, 883, 903
BslI	CCNNNNNNNGG	3 cut(s)	251, 545, 822
BsmAI	GTCTC	3 cut(s)	421, 458, 655
BsmBI	CGTCTC	1 cut(s)	421
BsmFI	GGGAC	3 cut(s)	313, 883, 903
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	3 cut(s)	287, 671, 815
Bso31I	GGTCTC	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	3 cut(s)	535, 709, 733
Bsp1720I	GCTNAGC	1 cut(s)	629
BspANI	GGCC	3 cut(s)	287, 671, 815
BspCNI	CTCAG	2 cut(s)	420, 642
BspLI	GGNNCC	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	467
BspOI	GCTAGC	1 cut(s)	764
BspPI	GGATC	1 cut(s)	530
BspTNI	GGTCTC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	3 cut(s)	273, 448, 545
BssMI	GATC	3 cut(s)	535, 709, 733
BssT1I	CCWWGG	2 cut(s)	273, 448
Bst2UI	CCWGG	4 cut(s)	246, 546, 579, 817
Bst4CI	ACNGT	5 cut(s)	49, 133, 328, 475, 863
Bst6I	CTCTTC	1 cut(s)	562
BstAUI	TGTACA	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	3 cut(s)	407, 561, 629
BstF5I	GGATG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	3 cut(s)	538, 712, 736
BstMAI	GTCTC	3 cut(s)	421, 458, 655
BstMBI	GATC	3 cut(s)	535, 709, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 530
BstNI	CCWGG	4 cut(s)	246, 546, 579, 817
BstSCI	CCNGG	4 cut(s)	244, 544, 577, 815
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	449, 452, 769
BstXI	CCANNNNNNTGG	1 cut(s)	585
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	3 cut(s)	287, 671, 815
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	333, 471
Cac8I	GCNNGC	1 cut(s)	762
CfoI	GCGC	1 cut(s)	649
Cfr10I	RCCGGY	1 cut(s)	287
CsiI	ACCWGGT	1 cut(s)	577
Csp6I	GTAC	5 cut(s)	45, 476, 602, 742, 883
CviAII	CATG	3 cut(s)	176, 745, 805
CviQI	GTAC	5 cut(s)	45, 476, 602, 742, 883
DdeI	CTNAG	3 cut(s)	407, 561, 629
DpnI	GATC	3 cut(s)	537, 711, 735
DpnII	GATC	3 cut(s)	535, 709, 733
DraI	TTTAAA	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	273, 448
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	127
EcoRII	CCWGG	4 cut(s)	244, 544, 577, 815
EcoT14I	CCWWGG	2 cut(s)	273, 448
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	2 cut(s)	273, 448
Esp3I	CGTCTC	1 cut(s)	421
FaeI	CATG	3 cut(s)	179, 748, 808
FalI	AAGNNNNNCTT	3 cut(s)	33, 288, 320
FaqI	GGGAC	3 cut(s)	313, 883, 903
FatI	CATG	3 cut(s)	175, 744, 804
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	3 cut(s)	441, 463, 758
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	3 cut(s)	441, 463, 758
FspBI	CTAG	2 cut(s)	761, 765
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	3 cut(s)	441, 463, 758
HaeIII	GGCC	3 cut(s)	287, 671, 815
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	3 cut(s)	179, 748, 808
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	4 cut(s)	341, 347, 589, 903
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	5 cut(s)	12, 534, 601, 769, 898
Hpy166II	GTNNAC	1 cut(s)	854
Hpy188I	TCNGA	3 cut(s)	137, 319, 346
Hpy188III	TCNNGA	1 cut(s)	502
Hpy8I	GTNNAC	1 cut(s)	854
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	699, 790
HpyCH4III	ACNGT	5 cut(s)	49, 133, 328, 475, 863
HpyCH4IV	ACGT	1 cut(s)	850
HpyCH4V	TGCA	5 cut(s)	35, 364, 386, 465, 915
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 530
HpyF3I	CTNAG	3 cut(s)	407, 561, 629
HpySE526I	ACGT	1 cut(s)	850
Hsp92II	CATG	3 cut(s)	179, 748, 808
HspAI	GCGC	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	3 cut(s)	535, 709, 733
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	3 cut(s)	449, 452, 769
LweI	GCATC	3 cut(s)	96, 346, 373
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	2 cut(s)	761, 765
MaeII	ACGT	1 cut(s)	850
MaeIII	GTNAC	3 cut(s)	178, 467, 846
MalI	GATC	3 cut(s)	537, 711, 735
MboI	GATC	3 cut(s)	535, 709, 733
MboII	GAAGA	4 cut(s)	9, 483, 549, 581
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	3 cut(s)	240, 419, 832
MlyI	GAGTC	2 cut(s)	583, 897
MnlI	CCTC	7 cut(s)	217, 220, 492, 660, 696, 815, 909
MseI	TTAA	3 cut(s)	152, 417, 423
MslI	CAYNNNNRTG	1 cut(s)	547
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	4 cut(s)	246, 546, 579, 817
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	4 cut(s)	246, 546, 579, 817
MwoI	GCNNNNNNNGC	2 cut(s)	84, 530
NdeII	GATC	3 cut(s)	535, 709, 733
NheI	GCTAGC	1 cut(s)	760
NlaIII	CATG	3 cut(s)	179, 748, 808
NlaIV	GGNNCC	1 cut(s)	256
OliI	CACNNNNGTG	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	878
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	341, 347
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	3 cut(s)	442, 464, 759
PleI	GAGTC	2 cut(s)	583, 897
PpsI	GAGTC	2 cut(s)	583, 897
PsiI	TTATAA	1 cut(s)	678
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	4 cut(s)	244, 544, 577, 815
PspGI	CCWGG	4 cut(s)	244, 544, 577, 815
PspN4I	GGNNCC	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	467
RsaI	GTAC	5 cut(s)	46, 477, 603, 743, 884
RsaNI	GTAC	5 cut(s)	45, 476, 602, 742, 883
RseI	CAYNNNNRTG	1 cut(s)	547
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	152, 417, 423
SatI	GCNGC	3 cut(s)	441, 463, 758
Sau3AI	GATC	3 cut(s)	535, 709, 733
SchI	GAGTC	2 cut(s)	583, 897
ScrFI	CCNGG	4 cut(s)	246, 546, 579, 817
SduI	GDGCHC	1 cut(s)	129
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	3 cut(s)	96, 346, 373
SfcI	CTRYAG	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	547
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	3 cut(s)	240, 419, 832
SspMI	CTAG	2 cut(s)	761, 765
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	4 cut(s)	244, 544, 577, 815
StyI	CCWWGG	2 cut(s)	273, 448
TaaI	ACNGT	5 cut(s)	49, 133, 328, 475, 863
TaiI	ACGT	1 cut(s)	853
TaqI	TCGA	2 cut(s)	501, 901
TasI	AATT	3 cut(s)	240, 419, 832
TatI	WGTACW	1 cut(s)	475
TfiI	GAWTC	2 cut(s)	341, 347
Tru1I	TTAA	3 cut(s)	152, 417, 423
Tru9I	TTAA	3 cut(s)	152, 417, 423
TscAI	CASTG	2 cut(s)	333, 478
TseI	GCWGC	3 cut(s)	440, 462, 757
TspDTI	ATGAA	3 cut(s)	138, 764, 821
TspRI	CASTG	2 cut(s)	333, 478
Van91I	CCANNNNNTGG	1 cut(s)	545
XapI	RAATTY	2 cut(s)	419, 832
XcmI	CCANNNNNNNNNTGG	3 cut(s)	201, 280, 546
XspI	CTAG	2 cut(s)	761, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.