Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013539

Physical Location & Seq

Genomic Coordinates Forward (+)

32341959 .. 32343625

Gene Structure 1667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0293000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCCAACGCCTCACCCTTCGCCCCCTCATTTCCCCGTAATTACCTCCTTACCCCTACCCCTCCATCTTCCCGCCCTCTCCTCCCCCACACTCTTTACCATGCTGCCGCTGCTGCTGCTCATCCCATCTCATCGTCATCGTCATCCGTTAATGCACTAGGAAAGAATTACCATTACCATTCTGTCCCTCGACGAGCAACGACGACGTGCAAGGCGTCGGAGGTGTCGTCGTCCTCTGTTGCCGAAGCGTCCTCGGAGAACTGGGTGCCGGTGGTGCCGCTGGCGGCGCTGCCCAAGGGCGAGCGGCGCGTGATAGTTCAGGACGGAGAGGCCATACTGTTGCTCTGGTACAAAGACCAAGTCTTCGCCATTGAGAATCGCTCACCGGCCGAAGGAGCTTACACTGAGGGCCTCCTCAATGCCAAGCTCACTCAGGATGGGTGTATAGTGTGCCCATCAACTGATAGCACATTTGATCTGCGGACTGGTGCCATTAAGGAATGGTACCCCAAAAACCCGGTGCTGAGAGCTCTCACACCGGCTTTGAGGACTCTTTATGTTTATCCTGCCAAGACTGATGAAAAGAACATCTACATTAGCCTCGAACCCGGCACCGTAAATTCTGATGCAGCTGCCGAGATTGTGTTCAGTGGCAAGGCTCAACCTGGTGTCACTGCTTCGGATGTCAATATCGAGGAGGTGAAAATGGTGGTTGATGAGGGCTTAGAAGGAGGGGCTTTTGGTTTCACAATGAGGAATGAAATAATAAATGGGAAGGCAGCTACGATTGGGTTCCTCCTGTTATTAGATTTTGAGCTCTTGACTGGTAAAGGTCTTCTTAAGGGAACTGGCTTCTTGGACTTTATTTATTCTGTCTCAAATGCTCTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

31.86

Weight (kDa)

5.78

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske_2	PF13806	87 - 199	1.1e-19	Rieske-like [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64770 AT1G64770 AT1G64770
fragaria_vesca	FvH4_6g27680
malus_domestica	MD17G1264700.v1.1
prunus_persica	Prupe.3G114100_v2.0.a1
pyrus_communis	pycom17g26450
rosa_chinensis	RchiOBHm_Chr2g0130821
rosa_multiflora	Rmu_sc0031245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113540 Rroxscaffold_2G00113880
rosa_rugosa	Rorug02G0293000
rosa_samantha	Rh2AG344800 Rh2BG353200 Rh2CG331600 Rh2DG371000
rosa_wichuraiana	Rw0G012510 Rw2G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	504
AccB1I	GGYRCC	5 cut(s)	265, 274, 488, 504, 611
AccBSI	CCGCTC	1 cut(s)	304
AccII	CGCG	1 cut(s)	309
AciI	CCGC	6 cut(s)	73, 108, 278, 284, 304, 481
AcoI	YGGCCR	2 cut(s)	3, 387
AcsI	RAATTY	1 cut(s)	619
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	2 cut(s)	350, 506
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflII	CTTAAG	1 cut(s)	839
AjiI	CACGTC	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	6 cut(s)	398, 427, 530, 632, 782, 817
AluI	AGCT	6 cut(s)	398, 427, 530, 632, 782, 817
Alw21I	GWGCWC	2 cut(s)	532, 819
Alw26I	GTCTC	1 cut(s)	880
AoxI	GGCC	4 cut(s)	3, 330, 387, 409
ApeKI	GCWGC	8 cut(s)	104, 110, 113, 116, 289, 629, 632, 779
ApoI	RAATTY	1 cut(s)	619
ArsI	GACNNNNNNTTYG	4 cut(s)	345, 347, 377, 379
Asp718I	GGTACC	1 cut(s)	504
AspLEI	GCGC	2 cut(s)	289, 309
AspS9I	GGNCC	1 cut(s)	409
AsuC2I	CCSGG	2 cut(s)	518, 609
AsuHPI	GGTGA	3 cut(s)	6, 375, 712
BaeGI	GKGCMC	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	5 cut(s)	265, 274, 488, 504, 611
BanII	GRGCYC	2 cut(s)	532, 819
BbsI	GAAGAC	2 cut(s)	355, 827
Bbv12I	GWGCWC	2 cut(s)	532, 819
BbvI	GCAGC	8 cut(s)	91, 97, 100, 103, 276, 619, 641, 791
BccI	CCATC	4 cut(s)	73, 134, 431, 463
BciT130I	CCWGG	1 cut(s)	666
BcnI	CCSGG	2 cut(s)	518, 609
BcoDI	GTCTC	1 cut(s)	880
BfaI	CTAG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	290
BfrI	CTTAAG	1 cut(s)	839
Bme1390I	CCNGG	3 cut(s)	518, 609, 666
BmgBI	CACGTC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	6 cut(s)	267, 276, 490, 506, 613, 794
BmrFI	CCNGG	3 cut(s)	518, 609, 666
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	616
BmuI	ACTGGG	1 cut(s)	271
BpiI	GAAGAC	2 cut(s)	355, 827
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpmI	CTGGAG	1 cut(s)	872
BpuMI	CCSGG	2 cut(s)	518, 609
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	252, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse118I	RCCGGY	3 cut(s)	268, 385, 538
Bse1I	ACTGG	5 cut(s)	266, 490, 829, 853, 889
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	252, 294
BseGI	GGATG	4 cut(s)	121, 143, 442, 688
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	396, 446, 515
BseNI	ACTGG	5 cut(s)	266, 490, 829, 853, 889
BseRI	GAGGAG	3 cut(s)	71, 404, 710
BseSI	GKGCMC	1 cut(s)	455
BseX3I	CGGCCG	1 cut(s)	387
BseXI	GCAGC	8 cut(s)	91, 97, 100, 103, 276, 619, 641, 791
Bsh1236I	CGCG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	390
BshFI	GGCC	4 cut(s)	5, 332, 389, 411
BshNI	GGYRCC	5 cut(s)	265, 274, 488, 504, 611
BsiEI	CGRYCG	1 cut(s)	390
BsiHKAI	GWGCWC	2 cut(s)	532, 819
BsiSI	CCGG	5 cut(s)	269, 386, 518, 539, 609
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	880
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	4 cut(s)	5, 332, 389, 411
Bsp1286I	GDGCHC	3 cut(s)	455, 532, 819
Bsp143I	GATC	1 cut(s)	475
BspACI	CCGC	6 cut(s)	73, 108, 278, 284, 304, 481
BspANI	GGCC	4 cut(s)	5, 332, 389, 411
BspCNI	CTCAG	3 cut(s)	397, 445, 516
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	6 cut(s)	267, 276, 490, 506, 613, 794
BspT107I	GGYRCC	5 cut(s)	265, 274, 488, 504, 611
BspTI	CTTAAG	1 cut(s)	839
BsrBI	CCGCTC	1 cut(s)	304
BsrFI	RCCGGY	3 cut(s)	268, 385, 538
BsrI	ACTGG	5 cut(s)	266, 490, 829, 853, 889
BssAI	RCCGGY	3 cut(s)	268, 385, 538
BssECI	CCNNGG	2 cut(s)	252, 294
BssMI	GATC	1 cut(s)	475
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	2 cut(s)	339, 616
BstACI	GRCGYC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	839
BstC8I	GCNNGC	2 cut(s)	282, 302
BstDEI	CTNAG	4 cut(s)	405, 432, 524, 724
BstF5I	GGATG	4 cut(s)	121, 143, 442, 688
BstFNI	CGCG	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	2 cut(s)	289, 309
BstKTI	GATC	1 cut(s)	478
BstMAI	GTCTC	1 cut(s)	880
BstMBI	GATC	1 cut(s)	475
BstMCI	CGRYCG	1 cut(s)	390
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 113, 116, 274, 286, 306, 395
BstNI	CCWGG	1 cut(s)	666
BstSCI	CCNGG	3 cut(s)	516, 607, 664
BstSLI	GKGCMC	1 cut(s)	455
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	8 cut(s)	91, 97, 100, 103, 276, 619, 641, 791
BstV2I	GAAGAC	2 cut(s)	355, 827
BstZI	CGGCCG	1 cut(s)	387
BsuRI	GGCC	4 cut(s)	5, 332, 389, 411
BtrI	CACGTC	1 cut(s)	207
BtsCI	GGATG	4 cut(s)	121, 143, 442, 688
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	3 cut(s)	402, 655, 672
Cac8I	GCNNGC	2 cut(s)	282, 302
CfoI	GCGC	2 cut(s)	289, 309
Cfr10I	RCCGGY	3 cut(s)	268, 385, 538
Cfr13I	GGNCC	1 cut(s)	409
CseI	GACGC	2 cut(s)	204, 237
CsiI	ACCWGGT	1 cut(s)	664
Csp6I	GTAC	2 cut(s)	349, 505
CviAII	CATG	1 cut(s)	101
CviQI	GTAC	2 cut(s)	349, 505
DdeI	CTNAG	4 cut(s)	405, 432, 524, 724
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
EaeI	YGGCCR	2 cut(s)	3, 387
EagI	CGGCCG	1 cut(s)	387
Ecl136II	GAGCTC	2 cut(s)	530, 817
EclXI	CGGCCG	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	2 cut(s)	532, 819
Eco52I	CGGCCG	1 cut(s)	387
Eco53kI	GAGCTC	2 cut(s)	530, 817
EcoICRI	GAGCTC	2 cut(s)	530, 817
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	2 cut(s)	532, 819
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	104
FaiI	YATR	4 cut(s)	102, 335, 446, 558
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	100
FauI	CCCGC	1 cut(s)	80
FokI	GGATG	4 cut(s)	108, 130, 449, 695
FriOI	GRGCYC	2 cut(s)	532, 819
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	2 cut(s)	288, 308
GsuI	CTGGAG	1 cut(s)	872
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	4 cut(s)	5, 332, 389, 411
HapII	CCGG	5 cut(s)	269, 386, 518, 539, 609
HgaI	GACGC	2 cut(s)	204, 237
HhaI	GCGC	2 cut(s)	289, 309
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	104
Hin6I	GCGC	2 cut(s)	287, 307
HinP1I	GCGC	2 cut(s)	287, 307
HinfI	GANTC	2 cut(s)	376, 550
HpaII	CCGG	5 cut(s)	269, 386, 518, 539, 609
HphI	GGTGA	3 cut(s)	6, 375, 712
Hpy188I	TCNGA	4 cut(s)	220, 256, 625, 682
Hpy188III	TCNNGA	3 cut(s)	320, 434, 820
Hpy99I	CGWCG	5 cut(s)	195, 205, 208, 220, 232
HpyAV	CCTTC	4 cut(s)	28, 386, 722, 769
HpyCH4III	ACNGT	2 cut(s)	339, 616
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	3 cut(s)	155, 210, 629
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 113, 116, 274, 286, 306, 395
HpyF3I	CTNAG	4 cut(s)	405, 432, 524, 724
HpySE526I	ACGT	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	104
HspAI	GCGC	2 cut(s)	287, 307
KpnI	GGTACC	1 cut(s)	508
Kzo9I	GATC	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	8 cut(s)	91, 97, 100, 103, 276, 619, 641, 791
LweI	GCATC	1 cut(s)	616
MabI	ACCWGGT	1 cut(s)	664
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	1 cut(s)	477
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	1 cut(s)	475
MboII	GAAGA	3 cut(s)	60, 355, 827
MhlI	GDGCHC	3 cut(s)	455, 532, 819
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	40, 166, 619
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	544
MmeI	TCCRAC	1 cut(s)	198
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	150, 495, 840
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	110, 280, 632
MspCI	CTTAAG	1 cut(s)	839
MspI	CCGG	5 cut(s)	269, 386, 518, 539, 609
MspR9I	CCNGG	3 cut(s)	518, 609, 666
MvaI	CCWGG	1 cut(s)	666
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	7 cut(s)	110, 113, 116, 274, 286, 306, 395
NciI	CCSGG	2 cut(s)	518, 609
NdeII	GATC	1 cut(s)	475
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	6 cut(s)	267, 276, 490, 506, 613, 794
NmeAIII	GCCGAG	1 cut(s)	661
NmuCI	GTSAC	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	2 cut(s)	212, 224
PfeI	GAWTC	1 cut(s)	376
PflFI	GACNNNGTC	1 cut(s)	359
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
Psp124BI	GAGCTC	2 cut(s)	532, 819
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	6 cut(s)	267, 276, 490, 506, 613, 794
PspPI	GGNCC	1 cut(s)	409
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	2 cut(s)	350, 506
RsaNI	GTAC	2 cut(s)	349, 505
SacI	GAGCTC	2 cut(s)	532, 819
SaqAI	TTAA	3 cut(s)	150, 495, 840
Sau3AI	GATC	1 cut(s)	475
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	3 cut(s)	518, 609, 666
SduI	GDGCHC	3 cut(s)	455, 532, 819
SexAI	ACCWGGT	1 cut(s)	664
SfaNI	GCATC	1 cut(s)	616
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
Sse9I	AATT	3 cut(s)	40, 166, 619
SsiI	CCGC	6 cut(s)	73, 108, 278, 284, 304, 481
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	2 cut(s)	532, 819
StyD4I	CCNGG	3 cut(s)	516, 607, 664
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	339, 616
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	190, 603, 693
TasI	AATT	3 cut(s)	40, 166, 619
TauI	GCSGC	4 cut(s)	110, 280, 287, 307
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	3 cut(s)	150, 495, 840
Tru9I	TTAA	3 cut(s)	150, 495, 840
TscAI	CASTG	3 cut(s)	409, 655, 679
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	8 cut(s)	104, 110, 113, 116, 289, 629, 632, 779
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	2 cut(s)	594, 774
TspGWI	ACGGA	2 cut(s)	136, 339
TspRI	CASTG	3 cut(s)	409, 655, 679
Tth111I	GACNNNGTC	1 cut(s)	359
Vha464I	CTTAAG	1 cut(s)	839
XapI	RAATTY	1 cut(s)	619
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.