AT1G64870

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014086
Physical Location & Seq
Forward (+)
24102917 .. 24103831
915 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G64870.1

Sequence Viewer

Length: 915 bp
ATGTCACATCCCACCGTAGAACAACTACATGCTTTCCATGCACAAGAAAGAGAGATATTCTCTAAACTAGTTCAAAAACTCCGAAGACCACCAGCTGAGTCACTTCTTGTCATGGCCACATGGCTTTGGTTTGAAGACTTTGGCTTCGGAAACATTTTCTCCATCATCACGGTTTTTAGCGATCTACTCATTGTAGATCTCGCTAACGAGGCTGTCTTGTGCTTTCGGTGCCTTGAATCTGACCAGCCCCCAAATGATGTCAGTCAGATCCCTCTCACCGAGAGATTCATGAAAAATGACATATCCCTTCAAATAATCCACAATCATCGATACACTGCCATTACGGGAATAAAGAACTTTTTAACCACTATTTGTTCTAGAATATTCTCTGATATCCTTCAACGAGTTCTTCCATCTTCATCATCCTCATTCATCACCAATCTCCGCCACCCTCTCATCATTCCCGGTTTCCCTCATCCAACTTTTGGGAGCATCAACGTATTGCCTAATATCGTTGCTAGGGATAATCTTCCAAACGCAAATTCATTTCTTTTTCCTCATGGTCTTTGGGGCTGGAACGCTAACCATGTCGCGACTGATAAAGAACGGACGGTATTTCTAACGTTTTCTCGTGGTTTTCCCGTGTCACATGCTGAGGTGATTCATCTCTTCACCGAGATATATGGAGAAGATTGTGTCGAAAGCGTTTACATGCCAGAGGACGGTGGAAATTCCTCCAATGACAACACAAATTGCAATGGTCATCAGCAACAACCACTATTCGCGAAGATGGTCTTGGACTCGGTTGTTACCGTAGATCGTATACTCAGCGGCCAGGAAAAACAAAAGTATAAGATCAATGGAAAGCATATTTGGGCTCGTAAGTTCAAGAATAATAAAGACGGTCTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

304

Amino Acids

34.55

Weight (kDa)

6.49

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64870 AT3G45200 AT5G11220 AT5G24355
fragaria_vesca FvH4_2g29280
malus_domestica MD08G1149000.v1.1 MD15G1124100.v1.1
prunus_persica Prupe.1G479500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298091
rosa_laevigata RLG00000011535
rosa_multiflora Rmu_sc0002800.1_g000005
rosa_rugosa Rorug06G0278800
rosa_samantha Rh6AG388900 Rh6BG397200 Rh6CG403100 Rh6DG389700
rosa_wichuraiana Rw6G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 228
AccB7I CCANNNNNTGG 1 cut(s) 485
AccI GTMKAC 1 cut(s) 823
AccII CGCG 2 cut(s) 593, 785
AciI CCGC 2 cut(s) 445, 831
AclI AACGTT 1 cut(s) 623
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 2 cut(s) 114, 832
AcsI RAATTY 2 cut(s) 541, 730
AfiI CCNNNNNNNGG 2 cut(s) 485, 722
AgsI TTSAA 6 cut(s) 74, 134, 236, 311, 401, 889
AhlI ACTAGT 1 cut(s) 67
AjnI CCWGG 1 cut(s) 834
AjuI GAANNNNNNNTTGG 6 cut(s) 526, 558, 779, 811, 856, 888
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AlwI GGATC 1 cut(s) 262
AoxI GGCC 2 cut(s) 114, 832
ApoI RAATTY 2 cut(s) 541, 730
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 4 cut(s) 268, 427, 664, 670
BalI TGGCCA 1 cut(s) 116
BanI GGYRCC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 880
BauI CACGAG 1 cut(s) 630
BbsI GAAGAC 2 cut(s) 91, 141
BbvCI CCTCAGC 1 cut(s) 654
BccI CCATC 3 cut(s) 170, 421, 784
BciT130I CCWGG 1 cut(s) 836
BcnI CCSGG 1 cut(s) 465
BcuI ACTAGT 1 cut(s) 67
BfaI CTAG 3 cut(s) 68, 378, 519
BglII AGATCT 1 cut(s) 196
BisI GCNGC 1 cut(s) 832
BlsI GCNGC 1 cut(s) 833
Bme1390I CCNGG 2 cut(s) 465, 836
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 2 cut(s) 465, 836
BmsI GCATC 1 cut(s) 501
BpiI GAAGAC 2 cut(s) 91, 141
BplI GAGNNNNNCTC 2 cut(s) 44, 76
Bpu10I CCTNAGC 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 465
Bsa29I ATCGAT 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 722
Bse3DI GCAATG 1 cut(s) 763
BseBI CCWGG 1 cut(s) 836
BseCI ATCGAT 1 cut(s) 328
BseGI GGATG 3 cut(s) 7, 422, 475
BseLI CCNNNNNNNGG 2 cut(s) 485, 722
BseMI GCAATG 1 cut(s) 763
BseMII CTCAG 3 cut(s) 87, 645, 841
Bsh1236I CGCG 2 cut(s) 593, 785
BshFI GGCC 2 cut(s) 116, 834
BshNI GGYRCC 1 cut(s) 228
BshVI ATCGAT 1 cut(s) 328
BsiSI CCGG 1 cut(s) 465
BslI CCNNNNNNNGG 2 cut(s) 485, 722
BsnI GGCC 2 cut(s) 116, 834
Bsp1286I GDGCHC 1 cut(s) 880
Bsp143I GATC 5 cut(s) 181, 196, 267, 817, 855
Bsp68I TCGCGA 2 cut(s) 593, 785
BspACI CCGC 2 cut(s) 445, 831
BspANI GGCC 2 cut(s) 116, 834
BspCNI CTCAG 3 cut(s) 88, 646, 840
BspDI ATCGAT 1 cut(s) 328
BspFNI CGCG 2 cut(s) 593, 785
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 230
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 763
BssMI GATC 5 cut(s) 181, 196, 267, 817, 855
BssNAI GTATAC 1 cut(s) 824
BssSI CACGAG 1 cut(s) 630
Bst1107I GTATAC 1 cut(s) 824
Bst2BI CACGAG 1 cut(s) 630
Bst2UI CCWGG 1 cut(s) 836
Bst4CI ACNGT 6 cut(s) 16, 172, 613, 725, 814, 905
Bst6I CTCTTC 1 cut(s) 674
BstDEI CTNAG 3 cut(s) 96, 654, 827
BstF5I GGATG 3 cut(s) 7, 422, 475
BstFNI CGCG 2 cut(s) 593, 785
BstKTI GATC 5 cut(s) 184, 199, 270, 820, 858
BstMBI GATC 5 cut(s) 181, 196, 267, 817, 855
BstMWI GCNNNNNNNGC 3 cut(s) 38, 209, 228
BstNI CCWGG 1 cut(s) 836
BstNSI RCATGY 3 cut(s) 32, 653, 715
BstSCI CCNGG 2 cut(s) 463, 834
BstUI CGCG 2 cut(s) 593, 785
BstV2I GAAGAC 2 cut(s) 91, 141
BstX2I RGATCY 2 cut(s) 196, 267
BstYI RGATCY 2 cut(s) 196, 267
BstZ17I GTATAC 1 cut(s) 824
Bsu15I ATCGAT 1 cut(s) 328
BsuRI GGCC 2 cut(s) 116, 834
BsuTUI ATCGAT 1 cut(s) 328
BtsCI GGATG 3 cut(s) 7, 422, 475
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 333
BtuMI TCGCGA 2 cut(s) 593, 785
CciI TCATGA 1 cut(s) 288
ClaI ATCGAT 1 cut(s) 328
CviAII CATG 9 cut(s) 29, 38, 112, 120, 289, 560, 587, 650, 712
CviJI RGCY 9 cut(s) 95, 116, 124, 144, 212, 247, 573, 834, 878
CviKI_1 RGCY 9 cut(s) 95, 116, 124, 144, 212, 247, 573, 834, 878
DdeI CTNAG 3 cut(s) 96, 654, 827
DpnI GATC 5 cut(s) 183, 198, 269, 819, 857
DpnII GATC 5 cut(s) 181, 196, 267, 817, 855
EaeI YGGCCR 2 cut(s) 114, 832
Eam1104I CTCTTC 1 cut(s) 674
EarI CTCTTC 1 cut(s) 674
EciI GGCGGA 1 cut(s) 434
Eco24I GRGCYC 1 cut(s) 880
Eco32I GATATC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 834
EcoRV GATATC 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 880
FaeI CATG 9 cut(s) 32, 41, 115, 123, 292, 563, 590, 653, 715
FalI AAGNNNNNCTT 3 cut(s) 779, 811, 891
FatI CATG 9 cut(s) 28, 37, 111, 119, 288, 559, 586, 649, 711
FblI GTMKAC 1 cut(s) 823
Fnu4HI GCNGC 1 cut(s) 832
FokI GGATG 2 cut(s) 409, 462
FriOI GRGCYC 1 cut(s) 880
Fsp4HI GCNGC 1 cut(s) 832
FspBI CTAG 3 cut(s) 68, 378, 519
GluI GCNGC 1 cut(s) 832
HaeIII GGCC 2 cut(s) 116, 834
HapII CCGG 1 cut(s) 465
Hin1II CATG 9 cut(s) 32, 41, 115, 123, 292, 563, 590, 653, 715
HinfI GANTC 5 cut(s) 98, 236, 285, 661, 800
HpaII CCGG 1 cut(s) 465
HphI GGTGA 4 cut(s) 268, 427, 664, 670
Hpy166II GTNNAC 2 cut(s) 709, 824
Hpy188I TCNGA 5 cut(s) 83, 149, 241, 267, 391
Hpy188III TCNNGA 5 cut(s) 289, 378, 592, 784, 889
Hpy8I GTNNAC 2 cut(s) 709, 824
HpyAV CCTTC 2 cut(s) 317, 407
HpyCH4III ACNGT 6 cut(s) 16, 172, 613, 725, 814, 905
HpyCH4IV ACGT 2 cut(s) 498, 623
HpyCH4V TGCA 2 cut(s) 41, 756
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 209, 228
HpyF3I CTNAG 3 cut(s) 96, 654, 827
HpySE526I ACGT 2 cut(s) 498, 623
Hsp92II CATG 9 cut(s) 32, 41, 115, 123, 292, 563, 590, 653, 715
Kzo9I GATC 5 cut(s) 181, 196, 267, 817, 855
LmnI GCTCC 1 cut(s) 489
LpnPI CCDG 7 cut(s) 105, 257, 478, 559, 729, 821, 848
LweI GCATC 1 cut(s) 501
MaeI CTAG 3 cut(s) 68, 378, 519
MaeII ACGT 2 cut(s) 498, 623
MaeIII GTNAC 4 cut(s) 3, 99, 645, 808
MalI GATC 5 cut(s) 183, 198, 269, 819, 857
MboI GATC 5 cut(s) 181, 196, 267, 817, 855
MboII GAAGA 8 cut(s) 96, 146, 401, 408, 521, 661, 701, 799
MflI RGATCY 2 cut(s) 196, 267
MhlI GDGCHC 1 cut(s) 880
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 3 cut(s) 541, 730, 751
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 2 cut(s) 107, 794
MmeI TCCRAC 1 cut(s) 503
MnlI CCTC 9 cut(s) 202, 282, 436, 462, 483, 567, 649, 712, 745
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
MseI TTAA 1 cut(s) 362
Msp20I TGGCCA 1 cut(s) 116
MspA1I CMGCKG 2 cut(s) 95, 831
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 2 cut(s) 465, 836
MvaI CCWGG 1 cut(s) 836
MvnI CGCG 2 cut(s) 593, 785
MwoI GCNNNNNNNGC 3 cut(s) 38, 209, 228
NciI CCSGG 1 cut(s) 465
NdeII GATC 5 cut(s) 181, 196, 267, 817, 855
NlaIII CATG 9 cut(s) 32, 41, 115, 123, 292, 563, 590, 653, 715
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 3 cut(s) 3, 99, 645
NruI TCGCGA 2 cut(s) 593, 785
NspI RCATGY 3 cut(s) 32, 653, 715
PagI TCATGA 1 cut(s) 288
PfeI GAWTC 3 cut(s) 236, 285, 661
PflMI CCANNNNNTGG 1 cut(s) 485
PkrI GCNGC 1 cut(s) 833
PleI GAGTC 2 cut(s) 106, 794
PpsI GAGTC 2 cut(s) 106, 794
Psp1406I AACGTT 1 cut(s) 623
Psp6I CCWGG 1 cut(s) 834
PspGI CCWGG 1 cut(s) 834
PspN4I GGNNCC 1 cut(s) 230
PsuI RGATCY 2 cut(s) 196, 267
PvuII CAGCTG 1 cut(s) 95
RruI TCGCGA 2 cut(s) 593, 785
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 1 cut(s) 832
Sau3AI GATC 5 cut(s) 181, 196, 267, 817, 855
SchI GAGTC 2 cut(s) 107, 794
ScrFI CCNGG 2 cut(s) 465, 836
SduI GDGCHC 1 cut(s) 880
SetI ASST 4 cut(s) 97, 501, 626, 660
SfaNI GCATC 1 cut(s) 501
SpeI ACTAGT 1 cut(s) 67
Sse9I AATT 3 cut(s) 541, 730, 751
SsiI CCGC 2 cut(s) 445, 831
SspI AATATT 1 cut(s) 384
SspMI CTAG 3 cut(s) 68, 378, 519
StyD4I CCNGG 2 cut(s) 463, 834
TaaI ACNGT 6 cut(s) 16, 172, 613, 725, 814, 905
TaiI ACGT 2 cut(s) 501, 626
TaqI TCGA 2 cut(s) 328, 699
TasI AATT 3 cut(s) 541, 730, 751
TauI GCSGC 1 cut(s) 834
TfiI GAWTC 3 cut(s) 236, 285, 661
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 3 cut(s) 3, 99, 645
Tsp45I GTSAC 3 cut(s) 3, 99, 645
TspDTI ATGAA 6 cut(s) 277, 305, 408, 421, 534, 653
TspGWI ACGGA 1 cut(s) 622
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 485
XapI RAATTY 2 cut(s) 541, 730
XbaI TCTAGA 1 cut(s) 377
XceI RCATGY 3 cut(s) 32, 653, 715
XmiI GTMKAC 1 cut(s) 823
XspI CTAG 3 cut(s) 68, 378, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.