RLG00000011535

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014086
Physical Location & Seq
Reverse (-)
10362350 .. 10363228
879 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011535

Sequence Viewer

Length: 879 bp
ATGAGTACCTCCATTAATATTGTCACCGAAGAGAAGCTTCATGCCTTTTACAAGATTGATCGAGATCTCTTCTCTCGATTGGTCGTGAGCTTCATGCGTGACCCGGCTCAATCCCTTCTGGTGATGGCGTTATGGCTATGGCTGGAAAAGGACTACCCCAACATCATAGTCAAGATGTTGGGGCTTCCTGACAGCATAGTCAATGCCCTGGCTGATGAAGCTGTGCTTTGCTTGAGGTGTTTGGACTGCAGTACTAGTAACAGTACTCTTTTATGTCTAGCGCCAAATGGTCGAATTGTCCTCACTTCAAGGCTCATGCAGAAGGAAATCTCACTCCAAATGTTCATTCAGAACAGATACACTACAATCAGTGGGGTAAAGAATTTTCTCACTAATATTTGTGCTCGAATTTTCACTGATATTTTGCAGAGGGTTTTGCCTGGTACAAATCCAATAATGCCACAGTTTACTCATCCCCAGCAGCCCCTTGTGATTCCGGGATTTCCACATCCAGTGTTTGGTGCACTCAATATAATCCCGGGATTTGTTGCGGACTTTACTCCCACAGGAGGCTTATGGGGCTGGAACCCATCTATTGAGTTATCTGCTGATGACAGGACTATGTTTCTTACATTCTCAAGGGGGTTTCATGTGTCAGTGGAAGAAGTGAAGCAGCTTTTTTCAGAGGTTCTTGGGATGGAGAAGTGTGTTGAAGATGTGGACATGGAAAATGTACCTTCTGATGAACAACCATTGTATGCTAAAATGGTGTTATCTTCTGTCACACTTGTTGATAAGATCTTGAAAGGGAATCGCGTCTCCAAGTTTCGGATCAATGGCAAGCACATCTGGGCTAGAAAATATGAACGCCGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.11

Weight (kDa)

6.96

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64870 AT3G45200 AT5G11220 AT5G24355
fragaria_vesca FvH4_2g29280
malus_domestica MD08G1149000.v1.1 MD15G1124100.v1.1
prunus_persica Prupe.1G479500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298091
rosa_laevigata RLG00000011535
rosa_multiflora Rmu_sc0002800.1_g000005
rosa_rugosa Rorug06G0278800
rosa_samantha Rh6AG388900 Rh6BG397200 Rh6CG403100 Rh6DG389700
rosa_wichuraiana Rw6G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 518
AccII CGCG 1 cut(s) 816
AciI CCGC 1 cut(s) 551
AclWI GGATC 1 cut(s) 839
AcsI RAATTY 2 cut(s) 382, 408
AfaI GTAC 5 cut(s) 7, 253, 265, 445, 735
AfiI CCNNNNNNNGG 3 cut(s) 518, 569, 828
AgsI TTSAA 3 cut(s) 309, 713, 805
AhlI ACTAGT 1 cut(s) 254
AjnI CCWGG 2 cut(s) 207, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AluBI AGCT 4 cut(s) 37, 90, 221, 676
AluI AGCT 4 cut(s) 37, 90, 221, 676
Alw21I GWGCWC 2 cut(s) 406, 526
Alw26I GTCTC 2 cut(s) 823, 867
Alw44I GTGCAC 1 cut(s) 522
AlwI GGATC 1 cut(s) 839
Ama87I CYCGRG 1 cut(s) 538
ApaLI GTGCAC 1 cut(s) 522
ApeKI GCWGC 2 cut(s) 481, 673
ApoI RAATTY 2 cut(s) 382, 408
AseI ATTAAT 1 cut(s) 15
AspLEI GCGC 1 cut(s) 283
AsuC2I CCSGG 4 cut(s) 104, 498, 539, 540
AsuHPI GGTGA 2 cut(s) 16, 133
AvaI CYCGRG 1 cut(s) 538
BaeGI GKGCMC 1 cut(s) 526
Bbv12I GWGCWC 2 cut(s) 406, 526
BbvI GCAGC 2 cut(s) 493, 685
BccI CCATC 3 cut(s) 118, 598, 691
BciT130I CCWGG 2 cut(s) 209, 441
BcnI CCSGG 4 cut(s) 104, 498, 539, 540
BcoDI GTCTC 2 cut(s) 823, 867
BcuI ACTAGT 1 cut(s) 254
BfaI CTAG 4 cut(s) 255, 278, 855, 877
BfmI CTRYAG 1 cut(s) 247
BfoI RGCGCY 1 cut(s) 284
BglII AGATCT 2 cut(s) 64, 798
BisI GCNGC 2 cut(s) 482, 674
BlsI GCNGC 2 cut(s) 483, 675
BmcAI AGTACT 2 cut(s) 253, 265
Bme1390I CCNGG 6 cut(s) 104, 209, 441, 498, 539, 540
BmeT110I CYCGRG 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 587
BmrFI CCNGG 6 cut(s) 104, 209, 441, 498, 539, 540
BpuEI CTTGAG 2 cut(s) 253, 622
BpuMI CCSGG 4 cut(s) 104, 498, 539, 540
BsaBI GATNNNNATC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 207, 538
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 569, 828
Bse1I ACTGG 1 cut(s) 512
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 2 cut(s) 209, 441
BseDI CCNNGG 2 cut(s) 207, 538
BseGI GGATG 3 cut(s) 472, 508, 702
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 3 cut(s) 518, 569, 828
BseNI ACTGG 1 cut(s) 512
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 2 cut(s) 493, 685
BseYI CCCAGC 1 cut(s) 477
Bsh1236I CGCG 1 cut(s) 816
BsiHKAI GWGCWC 2 cut(s) 406, 526
BsiHKCI CYCGRG 1 cut(s) 538
BsiSI CCGG 3 cut(s) 104, 497, 539
BslI CCNNNNNNNGG 3 cut(s) 518, 569, 828
BsmAI GTCTC 2 cut(s) 823, 867
BsmBI CGTCTC 1 cut(s) 823
BsoBI CYCGRG 1 cut(s) 538
Bsp1286I GDGCHC 2 cut(s) 406, 526
Bsp143I GATC 4 cut(s) 58, 64, 798, 831
BspACI CCGC 1 cut(s) 551
BspFNI CGCG 1 cut(s) 816
BspLI GGNNCC 1 cut(s) 587
BspMAI CTGCAG 1 cut(s) 251
BspPI GGATC 1 cut(s) 839
BsrI ACTGG 1 cut(s) 512
BssECI CCNNGG 2 cut(s) 207, 538
BssMI GATC 4 cut(s) 58, 64, 798, 831
Bst2UI CCWGG 2 cut(s) 209, 441
Bst4CI ACNGT 2 cut(s) 263, 465
Bst6I CTCTTC 2 cut(s) 24, 74
BstC8I GCNNGC 1 cut(s) 842
BstF5I GGATG 3 cut(s) 472, 508, 702
BstFNI CGCG 1 cut(s) 816
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 4 cut(s) 61, 67, 801, 834
BstMAI GTCTC 2 cut(s) 823, 867
BstMBI GATC 4 cut(s) 58, 64, 798, 831
BstMWI GCNNNNNNNGC 2 cut(s) 218, 579
BstNI CCWGG 2 cut(s) 209, 441
BstSCI CCNGG 6 cut(s) 102, 207, 439, 496, 537, 538
BstSFI CTRYAG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 526
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 2 cut(s) 493, 685
BstX2I RGATCY 2 cut(s) 64, 798
BstYI RGATCY 2 cut(s) 64, 798
BtsCI GGATG 3 cut(s) 472, 508, 702
BtsIMutI CAGTG 4 cut(s) 376, 414, 519, 663
Cac8I GCNNGC 1 cut(s) 842
CfoI GCGC 1 cut(s) 283
Cfr9I CCCGGG 1 cut(s) 538
CseI GACGC 1 cut(s) 805
Csp6I GTAC 5 cut(s) 6, 252, 264, 444, 734
CviAII CATG 5 cut(s) 41, 94, 316, 650, 724
CviQI GTAC 5 cut(s) 6, 252, 264, 444, 734
DpnI GATC 4 cut(s) 60, 66, 800, 833
DpnII GATC 4 cut(s) 58, 64, 798, 831
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
Eam1104I CTCTTC 2 cut(s) 24, 74
EarI CTCTTC 2 cut(s) 24, 74
Eco88I CYCGRG 1 cut(s) 538
EcoRII CCWGG 2 cut(s) 207, 439
Esp3I CGTCTC 1 cut(s) 823
FaeI CATG 5 cut(s) 44, 97, 319, 653, 727
FalI AAGNNNNNCTT 4 cut(s) 21, 53, 210, 242
FatI CATG 5 cut(s) 40, 93, 315, 649, 723
Fnu4HI GCNGC 2 cut(s) 482, 674
FokI GGATG 3 cut(s) 459, 495, 709
Fsp4HI GCNGC 2 cut(s) 482, 674
FspBI CTAG 4 cut(s) 255, 278, 855, 877
GlaI GCGC 1 cut(s) 282
GluI GCNGC 2 cut(s) 482, 674
GsaI CCCAGC 1 cut(s) 481
HaeII RGCGCY 1 cut(s) 284
HapII CCGG 3 cut(s) 104, 497, 539
HgaI GACGC 1 cut(s) 805
HhaI GCGC 1 cut(s) 283
Hin1II CATG 5 cut(s) 44, 97, 319, 653, 727
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 2 cut(s) 493, 811
HpaII CCGG 3 cut(s) 104, 497, 539
HphI GGTGA 2 cut(s) 16, 133
Hpy166II GTNNAC 3 cut(s) 468, 524, 721
Hpy188I TCNGA 4 cut(s) 351, 685, 742, 831
Hpy188III TCNNGA 6 cut(s) 62, 75, 85, 172, 188, 802
Hpy8I GTNNAC 3 cut(s) 468, 524, 721
HpyAV CCTTC 3 cut(s) 125, 316, 747
HpyCH4III ACNGT 2 cut(s) 263, 465
HpyCH4V TGCA 4 cut(s) 249, 319, 427, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 579
Hsp92II CATG 5 cut(s) 44, 97, 319, 653, 727
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 4 cut(s) 58, 64, 798, 831
Lsp1109I GCAGC 2 cut(s) 493, 685
MaeI CTAG 4 cut(s) 255, 278, 855, 877
MaeIII GTNAC 4 cut(s) 22, 98, 257, 781
MalI GATC 4 cut(s) 60, 66, 800, 833
MboI GATC 4 cut(s) 58, 64, 798, 831
MboII GAAGA 5 cut(s) 41, 61, 674, 725, 768
MflI RGATCY 2 cut(s) 64, 798
MhlI GDGCHC 2 cut(s) 406, 526
MluCI AATT 3 cut(s) 294, 382, 408
MnlI CCTC 6 cut(s) 19, 228, 311, 423, 563, 679
MseI TTAA 1 cut(s) 15
MspI CCGG 3 cut(s) 104, 497, 539
MspR9I CCNGG 6 cut(s) 104, 209, 441, 498, 539, 540
MvaI CCWGG 2 cut(s) 209, 441
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 2 cut(s) 218, 579
NciI CCSGG 4 cut(s) 104, 498, 539, 540
NdeII GATC 4 cut(s) 58, 64, 798, 831
NlaIII CATG 5 cut(s) 44, 97, 319, 653, 727
NlaIV GGNNCC 1 cut(s) 587
NmuCI GTSAC 3 cut(s) 22, 98, 781
PfeI GAWTC 2 cut(s) 493, 811
PflMI CCANNNNNTGG 1 cut(s) 518
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 2 cut(s) 483, 675
PshBI ATTAAT 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 207, 439
PspFI CCCAGC 1 cut(s) 477
PspGI CCWGG 2 cut(s) 207, 439
PspN4I GGNNCC 1 cut(s) 587
PstI CTGCAG 1 cut(s) 251
PsuI RGATCY 2 cut(s) 64, 798
RsaI GTAC 5 cut(s) 7, 253, 265, 445, 735
RsaNI GTAC 5 cut(s) 6, 252, 264, 444, 734
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 2 cut(s) 482, 674
Sau3AI GATC 4 cut(s) 58, 64, 798, 831
ScaI AGTACT 2 cut(s) 253, 265
ScrFI CCNGG 6 cut(s) 104, 209, 441, 498, 539, 540
SduI GDGCHC 2 cut(s) 406, 526
SetI ASST 8 cut(s) 11, 39, 92, 223, 239, 678, 690, 739
SfcI CTRYAG 1 cut(s) 247
SmaI CCCGGG 1 cut(s) 540
SmlI CTYRAG 2 cut(s) 232, 637
SmoI CTYRAG 2 cut(s) 232, 637
SpeI ACTAGT 1 cut(s) 254
Sse9I AATT 3 cut(s) 294, 382, 408
SsiI CCGC 1 cut(s) 551
SspI AATATT 2 cut(s) 19, 397
SspMI CTAG 4 cut(s) 255, 278, 855, 877
StyD4I CCNGG 6 cut(s) 102, 207, 439, 496, 537, 538
TaaI ACNGT 2 cut(s) 263, 465
TaqI TCGA 4 cut(s) 61, 76, 292, 406
TasI AATT 3 cut(s) 294, 382, 408
TatI WGTACW 2 cut(s) 251, 263
TfiI GAWTC 2 cut(s) 493, 811
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 4 cut(s) 376, 421, 519, 663
TseFI GTSAC 3 cut(s) 22, 98, 781
TseI GCWGC 2 cut(s) 481, 673
Tsp45I GTSAC 3 cut(s) 22, 98, 781
TspDTI ATGAA 7 cut(s) 29, 82, 231, 334, 638, 759, 879
TspMI CCCGGG 1 cut(s) 538
TspRI CASTG 4 cut(s) 376, 421, 519, 663
Van91I CCANNNNNTGG 1 cut(s) 518
VneI GTGCAC 1 cut(s) 522
VspI ATTAAT 1 cut(s) 15
XapI RAATTY 2 cut(s) 382, 408
XmaI CCCGGG 1 cut(s) 538
XspI CTAG 4 cut(s) 255, 278, 855, 877
ZrmI AGTACT 2 cut(s) 253, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.