Prupe.1G479500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014086
Physical Location & Seq
Reverse (-)
40087407 .. 40088876
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G479500.1

Sequence Viewer

Length: 717 bp
ATGAACCAAGTACTTCTAGCGCCTCTGTTGAGATTTCAGACTTTCAATGCTTTAGCTGATGAAGCTGTGATATGCTTGAAGTGCCTAGACGCTAAGACAAGTCCCAATACCATGTCAAGGCTTGCCCCAAACGGCCTTCTTTTTACCTCAAGGCTCATGGAAAGGGAAATCCCACTGGACATGTTCAGCCAAAGCAGATACACCATAATCAGTGGGGTGAAAAATTTTCTTACCAATATTTGTGCTAGAATTTTTACTGATATTTTGCAGAGGGTTTTGTACCCAAATCCCCAAGGGCTTCTTGATCCTAACCAGCCTCTTGCAGTTCCTGGATTTCCTCATCCAGTGTTTGGCAGTGTAACAATAATTAACCCCATGTTCTCAAGTGACCATGGAATTCCCACAGGAGGCTTATGGGGCTGGCATCCAAGTATTGAGCTGTCTGTTGATGACAGGACTATGTTTCTAACATTTTCTAGGGGGTTTCCTGTGTCAGAAGAAGAGGTTAAGGAGCTCTTCATAGATTTACTTGGGTTTTATAACTGTGTTGAGAGTGTGCAGATGGAGCAGGTTGGTCCAAATGAGCAACCTTTGTATGCTAAAATGGTGTTAATTTCTGTCATTTTTGTTGACAAAATTCTGAAAGGGAACAGGGTTTCGAAGTTTCGAATCAACGGCAAGCACATTTGGGCTCGGAAGTATGAGCGCAGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.02

Weight (kDa)

7.69

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64870 AT3G45200 AT5G11220 AT5G24355
fragaria_vesca FvH4_2g29280
malus_domestica MD08G1149000.v1.1 MD15G1124100.v1.1
prunus_persica Prupe.1G479500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298091
rosa_laevigata RLG00000011535
rosa_multiflora Rmu_sc0002800.1_g000005
rosa_rugosa Rorug06G0278800
rosa_samantha Rh6AG388900 Rh6BG397200 Rh6CG403100 Rh6DG389700
rosa_wichuraiana Rw6G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
Acc36I ACCTGC 1 cut(s) 559
AccB7I CCANNNNNTGG 1 cut(s) 350
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 4 cut(s) 223, 249, 396, 636
AfaI GTAC 2 cut(s) 12, 281
AfiI CCNNNNNNNGG 3 cut(s) 117, 350, 407
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 2 cut(s) 46, 79
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 4 cut(s) 56, 65, 439, 514
AluI AGCT 4 cut(s) 56, 65, 439, 514
Alw21I GWGCWC 1 cut(s) 516
AlwI GGATC 1 cut(s) 299
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 1 cut(s) 133
ApoI RAATTY 4 cut(s) 223, 249, 396, 636
AspLEI GCGC 2 cut(s) 22, 708
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 1 cut(s) 229
AsuII TTCGAA 2 cut(s) 659, 667
AvaII GGWCC 1 cut(s) 575
BanII GRGCYC 2 cut(s) 516, 694
Bbv12I GWGCWC 1 cut(s) 516
BccI CCATC 1 cut(s) 556
BceAI ACGGC 2 cut(s) 148, 691
BciT130I CCWGG 1 cut(s) 330
BfaI CTAG 4 cut(s) 17, 86, 246, 477
BfoI RGCGCY 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 559
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 575
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 433
Bpu14I TTCGAA 2 cut(s) 659, 667
BpuEI CTTGAG 2 cut(s) 133, 367
BsaJI CCNNGG 2 cut(s) 292, 391
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 350, 407
Bse1I ACTGG 2 cut(s) 180, 344
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 292, 391
BseGI GGATG 2 cut(s) 340, 424
BseLI CCNNNNNNNGG 3 cut(s) 117, 350, 407
BseNI ACTGG 2 cut(s) 180, 344
BsgI GTGCAG 1 cut(s) 578
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 516
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 3 cut(s) 117, 350, 407
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 1 cut(s) 135
Bsp119I TTCGAA 2 cut(s) 659, 667
Bsp1286I GDGCHC 2 cut(s) 516, 694
Bsp143I GATC 1 cut(s) 304
Bsp19I CCATGG 1 cut(s) 391
BspANI GGCC 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 559
BspPI GGATC 1 cut(s) 299
BspQI GCTCTTC 1 cut(s) 521
BspT104I TTCGAA 2 cut(s) 659, 667
BsrI ACTGG 2 cut(s) 180, 344
BssECI CCNNGG 2 cut(s) 292, 391
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 2 cut(s) 292, 391
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 2 cut(s) 495, 521
BstBI TTCGAA 2 cut(s) 659, 667
BstC8I GCNNGC 3 cut(s) 123, 422, 680
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 2 cut(s) 340, 424
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 22, 708
BstKTI GATC 1 cut(s) 307
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 4 cut(s) 62, 81, 417, 565
BstNI CCWGG 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 328
BsuRI GGCC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 2 cut(s) 340, 424
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 4 cut(s) 173, 217, 351, 361
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 3 cut(s) 123, 422, 680
CaiI CAGNNNCTG 1 cut(s) 329
CfoI GCGC 2 cut(s) 22, 708
Cfr13I GGNCC 1 cut(s) 575
CseI GACGC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 11, 280
CviAII CATG 5 cut(s) 112, 157, 181, 376, 392
CviQI GTAC 2 cut(s) 11, 280
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 495, 521
EarI CTCTTC 2 cut(s) 495, 521
Ecl136II GAGCTC 1 cut(s) 514
Eco130I CCWWGG 2 cut(s) 292, 391
Eco24I GRGCYC 2 cut(s) 516, 694
Eco47I GGWCC 1 cut(s) 575
Eco53kI GAGCTC 1 cut(s) 514
EcoICRI GAGCTC 1 cut(s) 514
EcoRI GAATTC 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 2 cut(s) 292, 391
EcoT38I GRGCYC 2 cut(s) 516, 694
ErhI CCWWGG 2 cut(s) 292, 391
FaeI CATG 5 cut(s) 115, 160, 184, 379, 395
FalI AAGNNNNNCTT 4 cut(s) 285, 317, 500, 532
FaqI GGGAC 1 cut(s) 87
FatI CATG 5 cut(s) 111, 156, 180, 375, 391
FokI GGATG 2 cut(s) 327, 411
FriOI GRGCYC 2 cut(s) 516, 694
FspBI CTAG 4 cut(s) 17, 86, 246, 477
GlaI GCGC 2 cut(s) 21, 707
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 1 cut(s) 135
HgaI GACGC 1 cut(s) 98
HhaI GCGC 2 cut(s) 22, 708
Hin1II CATG 5 cut(s) 115, 160, 184, 379, 395
Hin6I GCGC 2 cut(s) 20, 706
HinP1I GCGC 2 cut(s) 20, 706
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 1 cut(s) 669
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 4 cut(s) 39, 496, 642, 696
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 631
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4V TGCA 3 cut(s) 268, 323, 559
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 81, 417, 565
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 5 cut(s) 115, 160, 184, 379, 395
HspAI GCGC 2 cut(s) 20, 706
Kzo9I GATC 1 cut(s) 304
LguI GCTCTTC 1 cut(s) 521
LmnI GCTCC 2 cut(s) 511, 565
LweI GCATC 1 cut(s) 433
MaeI CTAG 4 cut(s) 17, 86, 246, 477
MaeIII GTNAC 2 cut(s) 358, 386
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 3 cut(s) 508, 509, 512
MhlI GDGCHC 2 cut(s) 516, 694
MluCI AATT 6 cut(s) 223, 249, 366, 396, 612, 636
MnlI CCTC 7 cut(s) 33, 157, 264, 327, 348, 401, 496
MseI TTAA 3 cut(s) 369, 507, 611
MspR9I CCNGG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 4 cut(s) 62, 81, 417, 565
NcoI CCATGG 1 cut(s) 391
NdeII GATC 1 cut(s) 304
NlaIII CATG 5 cut(s) 115, 160, 184, 379, 395
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 1 cut(s) 184
NspV TTCGAA 2 cut(s) 659, 667
PciI ACATGT 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 669
PflMI CCANNNNNTGG 1 cut(s) 350
PfoI TCCNGGA 1 cut(s) 328
PscI ACATGT 1 cut(s) 180
PsiI TTATAA 1 cut(s) 540
Psp124BI GAGCTC 1 cut(s) 516
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspPI GGNCC 1 cut(s) 575
PstNI CAGNNNCTG 1 cut(s) 329
RsaI GTAC 2 cut(s) 12, 281
RsaNI GTAC 2 cut(s) 11, 280
SacI GAGCTC 1 cut(s) 516
SapI GCTCTTC 1 cut(s) 521
SaqAI TTAA 3 cut(s) 369, 507, 611
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 575
ScaI AGTACT 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 2 cut(s) 516, 694
SetI ASST 8 cut(s) 58, 67, 149, 441, 507, 516, 573, 592
SfaNI GCATC 1 cut(s) 433
SfuI TTCGAA 2 cut(s) 659, 667
SinI GGWCC 1 cut(s) 575
SmlI CTYRAG 2 cut(s) 148, 382
SmoI CTYRAG 2 cut(s) 148, 382
Sse9I AATT 6 cut(s) 223, 249, 366, 396, 612, 636
SspI AATATT 1 cut(s) 238
SspMI CTAG 4 cut(s) 17, 86, 246, 477
SstI GAGCTC 1 cut(s) 516
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 2 cut(s) 292, 391
TaaI ACNGT 1 cut(s) 545
TaqI TCGA 2 cut(s) 659, 667
TasI AATT 6 cut(s) 223, 249, 366, 396, 612, 636
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 669
Tru1I TTAA 3 cut(s) 369, 507, 611
Tru9I TTAA 3 cut(s) 369, 507, 611
TscAI CASTG 4 cut(s) 180, 217, 351, 361
TseFI GTSAC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 3 cut(s) 17, 75, 508
TspRI CASTG 4 cut(s) 180, 217, 351, 361
Van91I CCANNNNNTGG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 575
XapI RAATTY 4 cut(s) 223, 249, 396, 636
XceI RCATGY 1 cut(s) 184
XspI CTAG 4 cut(s) 17, 86, 246, 477
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.