AT5G11220

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014086
Physical Location & Seq
Forward (+)
3577057 .. 3577978
922 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11220.1

Sequence Viewer

Length: 798 bp
ATGGCTACATGGTTTTGGCTTGAGGACTTTTTTTCTCAAAACATCTTATCAACCATATTGGCTTTAAGCGATCCAGTCATTATGGCTTTAGCTAACGAGGCTGTCTTGTGCTTCCAATGCCTTGATTCTGCTGAGCAGCCAAATGACTTCAATCAGATCCCTCTTACTGCAGAACTCTTAGCAAAAGACATATCTCTTCAAATATTTCACAAACACCGATACAGTGCTATTGCAGGAATCAGAAACTTTTTAACCACTGTTTGTTCTAGAATATTTTCTGATATTCTTCAACGAGCTCTTCCACCTTCTTCATCATATCCTTTTGTCACCAGACTCCGCCATCCTCTTATCATCCCCGGCTTTCCCCATCCGACGTTTGGGAGCATCAATGTTATGCATGATGTTGTTGTTGGGGATAATCTCTACAACAACAACTTATTCCCATGTTCTCATGGTCTATGGGGTTGGAACGCTAGCTGCATCGCAACTGATAACGAAAGGACTATGTTTATAACATTTTCTCGTGGGTTTCCTGTTTCGCAAGCGGAGGTGAAACGATTTTTCACCAAAAACTATGGAGAAAATTGTGTTGAAGGCGTTTACATGAAAGAGGACAACAAGAACTTCCTTAACGCAAATGGGAATGACAATGGTCAACAACAATCACTATTCGCAAAGCTGGTCTTAAATTCAGTTGCTACTGTGGATCGTATACTCGACGGCGAGAAGATAAAAAGGTTTAAGTCTAATGGAAAACATATTTGGGCTCGTAAGTATAGCATGACTAGAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

30.1

Weight (kDa)

7.04

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64870 AT3G45200 AT5G11220 AT5G24355
fragaria_vesca FvH4_2g29280
malus_domestica MD08G1149000.v1.1 MD15G1124100.v1.1
prunus_persica Prupe.1G479500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298091
rosa_laevigata RLG00000011535
rosa_multiflora Rmu_sc0002800.1_g000005
rosa_rugosa Rorug06G0278800
rosa_samantha Rh6AG388900 Rh6BG397200 Rh6CG403100 Rh6DG389700
rosa_wichuraiana Rw6G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
AccI GTMKAC 1 cut(s) 712
AciI CCGC 2 cut(s) 337, 545
AclWI GGATC 3 cut(s) 65, 151, 714
AcsI RAATTY 1 cut(s) 688
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 4 cut(s) 151, 200, 290, 593
AjuI GAANNNNNNNTTGG 2 cut(s) 745, 777
AluBI AGCT 4 cut(s) 92, 296, 477, 679
AluI AGCT 4 cut(s) 92, 296, 477, 679
Alw21I GWGCWC 1 cut(s) 298
AlwI GGATC 3 cut(s) 65, 151, 714
ApeKI GCWGC 2 cut(s) 136, 477
ApoI RAATTY 1 cut(s) 688
Asp700I GAANNNNTTC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 3 cut(s) 319, 556, 562
AsuNHI GCTAGC 1 cut(s) 473
BanII GRGCYC 2 cut(s) 298, 769
BauI CACGAG 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 2 cut(s) 148, 464
BccI CCATC 2 cut(s) 348, 375
BceAI ACGGC 1 cut(s) 736
BcnI CCSGG 1 cut(s) 357
BfaI CTAG 3 cut(s) 267, 474, 786
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 2 cut(s) 137, 478
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 2 cut(s) 138, 479
Bme1390I CCNGG 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 2 cut(s) 393, 489
BmtI GCTAGC 1 cut(s) 477
BoxI GACNNNNGTC 1 cut(s) 651
Bpu1102I GCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 3 cut(s) 340, 351, 367
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 74
BseXI GCAGC 2 cut(s) 148, 464
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 298, 769
Bsp143I GATC 3 cut(s) 70, 156, 706
Bsp1720I GCTNAGC 1 cut(s) 132
BspACI CCGC 2 cut(s) 337, 545
BspCNI CTCAG 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 172
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 3 cut(s) 65, 151, 714
BspQI GCTCTTC 1 cut(s) 303
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 3 cut(s) 70, 156, 706
BssNAI GTATAC 1 cut(s) 713
BssSI CACGAG 1 cut(s) 522
Bst1107I GTATAC 1 cut(s) 713
Bst2BI CACGAG 1 cut(s) 522
Bst4CI ACNGT 3 cut(s) 224, 259, 703
Bst6I CTCTTC 2 cut(s) 201, 303
BstC8I GCNNGC 2 cut(s) 475, 543
BstDEI CTNAG 2 cut(s) 132, 178
BstF5I GGATG 3 cut(s) 340, 351, 367
BstKTI GATC 3 cut(s) 73, 159, 709
BstMBI GATC 3 cut(s) 70, 156, 706
BstMWI GCNNNNNNNGC 2 cut(s) 98, 117
BstPAI GACNNNNGTC 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 148, 464
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BstZ17I GTATAC 1 cut(s) 713
BtgZI GCGATG 1 cut(s) 466
BtsCI GGATG 3 cut(s) 340, 351, 367
BtsIMutI CAGTG 2 cut(s) 229, 255
Cac8I GCNNGC 2 cut(s) 475, 543
CviAII CATG 6 cut(s) 9, 398, 444, 452, 604, 781
DdeI CTNAG 2 cut(s) 132, 178
DpnI GATC 3 cut(s) 72, 158, 708
DpnII GATC 3 cut(s) 70, 156, 706
Eam1104I CTCTTC 2 cut(s) 201, 303
EarI CTCTTC 2 cut(s) 201, 303
EciI GGCGGA 1 cut(s) 326
Ecl136II GAGCTC 1 cut(s) 296
Eco24I GRGCYC 2 cut(s) 298, 769
Eco53kI GAGCTC 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 296
EcoT22I ATGCAT 1 cut(s) 399
EcoT38I GRGCYC 2 cut(s) 298, 769
FaeI CATG 6 cut(s) 12, 401, 447, 455, 607, 784
FalI AAGNNNNNCTT 2 cut(s) 668, 700
FatI CATG 6 cut(s) 8, 397, 443, 451, 603, 780
FblI GTMKAC 1 cut(s) 712
Fnu4HI GCNGC 2 cut(s) 137, 478
FokI GGATG 3 cut(s) 327, 338, 354
FriOI GRGCYC 2 cut(s) 298, 769
Fsp4HI GCNGC 2 cut(s) 137, 478
FspBI CTAG 3 cut(s) 267, 474, 786
GluI GCNGC 2 cut(s) 137, 478
HapII CCGG 1 cut(s) 357
Hin1II CATG 6 cut(s) 12, 401, 447, 455, 607, 784
HincII GTYRAC 1 cut(s) 656
HindII GTYRAC 1 cut(s) 656
HinfI GANTC 3 cut(s) 125, 237, 333
HpaII CCGG 1 cut(s) 357
HphI GGTGA 3 cut(s) 319, 556, 562
Hpy166II GTNNAC 3 cut(s) 601, 656, 713
Hpy188I TCNGA 4 cut(s) 156, 242, 280, 372
Hpy188III TCNNGA 1 cut(s) 267
Hpy8I GTNNAC 3 cut(s) 601, 656, 713
Hpy99I CGWCG 2 cut(s) 376, 722
HpyAV CCTTC 2 cut(s) 315, 587
HpyCH4III ACNGT 3 cut(s) 224, 259, 703
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 4 cut(s) 170, 233, 397, 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 117
HpyF3I CTNAG 2 cut(s) 132, 178
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 6 cut(s) 12, 401, 447, 455, 607, 784
Kzo9I GATC 3 cut(s) 70, 156, 706
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 381
LpnPI CCDG 6 cut(s) 87, 219, 343, 370, 546, 665
Lsp1109I GCAGC 2 cut(s) 148, 464
LweI GCATC 2 cut(s) 393, 489
MaeI CTAG 3 cut(s) 267, 474, 786
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 325
MalI GATC 3 cut(s) 72, 158, 708
MboI GATC 3 cut(s) 70, 156, 706
MboII GAAGA 5 cut(s) 188, 278, 290, 300, 739
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 2 cut(s) 298, 769
MluCI AATT 2 cut(s) 583, 688
MlyI GAGTC 1 cut(s) 327
MmeI TCCRAC 2 cut(s) 395, 446
MnlI CCTC 6 cut(s) 16, 91, 171, 354, 541, 604
Mph1103I ATGCAT 1 cut(s) 399
MroXI GAANNNNTTC 1 cut(s) 274
MseI TTAA 6 cut(s) 65, 251, 630, 686, 741, 796
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 357
MwoI GCNNNNNNNGC 2 cut(s) 98, 117
NciI CCSGG 1 cut(s) 357
NdeII GATC 3 cut(s) 70, 156, 706
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 6 cut(s) 12, 401, 447, 455, 607, 784
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 399
PciSI GCTCTTC 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 274
PfeI GAWTC 2 cut(s) 125, 237
PkrI GCNGC 2 cut(s) 138, 479
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PshAI GACNNNNGTC 1 cut(s) 651
PsiI TTATAA 1 cut(s) 512
Psp124BI GAGCTC 1 cut(s) 298
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 1 cut(s) 156
SacI GAGCTC 1 cut(s) 298
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 6 cut(s) 65, 251, 630, 686, 741, 796
SatI GCNGC 2 cut(s) 137, 478
Sau3AI GATC 3 cut(s) 70, 156, 706
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 2 cut(s) 298, 769
SetI ASST 8 cut(s) 94, 298, 307, 377, 479, 552, 681, 740
SfaNI GCATC 2 cut(s) 393, 489
SfcI CTRYAG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 2 cut(s) 583, 688
SsiI CCGC 2 cut(s) 337, 545
SspI AATATT 2 cut(s) 204, 273
SspMI CTAG 3 cut(s) 267, 474, 786
SstI GAGCTC 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 3 cut(s) 224, 259, 703
TaiI ACGT 1 cut(s) 377
TaqI TCGA 1 cut(s) 717
TasI AATT 2 cut(s) 583, 688
TfiI GAWTC 2 cut(s) 125, 237
Tru1I TTAA 6 cut(s) 65, 251, 630, 686, 741, 796
Tru9I TTAA 6 cut(s) 65, 251, 630, 686, 741, 796
TscAI CASTG 2 cut(s) 229, 262
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 136, 477
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 300, 620
TspRI CASTG 2 cut(s) 229, 262
XapI RAATTY 1 cut(s) 688
XbaI TCTAGA 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 712
XmnI GAANNNNTTC 1 cut(s) 274
XspI CTAG 3 cut(s) 267, 474, 786
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.