AT3G45200

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014086
Physical Location & Seq
Reverse (-)
16548828 .. 16549730
903 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45200.1

Sequence Viewer

Length: 903 bp
ATGTCTCTTCTCAACGCACAAGAACTACATGTTTTCCATGCTCAAGACAGAGAGATATTCTCTAAATTGGTCCTCAAATTCTCAAGGCCTCCAGCTGAGTCACTTCTTGTCATGGCCACATGGCTTTGGCTCGAGGACTTTGGCTTTGAAAACATTTTCTCAATCATCCTCACTCTCACAGATCCACTCATTGCCGGTCTTGCTTACGAAGCTGTCTCATGCTTTCAGTGCCTTTCTTTAAACAATCCCCCAATTGGCCGAATCCCTCTCACCACAAAATATCTGAAAAAGAATATATCACTCCAAATGATCTACAAAAATCGATATAGTGCTATCACAGGAATCAAAAACTTCTTAACCACTGTTTGTACCAGAATCTTCACCGACATCCTTCTACGAGTTCTTCCACCTTCTTCAATGTCTTCCTTTGACGCAAGACTTCGCCAACCTCTTCAAATCCCCGGGTTCCCTCATCCGATTTTTGGAAGCATCAATGTGATGCCTAATGAAGTTGATAGGGATAATTTCTCCAACAAGAACAACAACTTATTTTTCATCCCAAATGGTCTATGGGGCTGGAACGCTAATTGCATCGCCACTGAGAACGATCGGACCTTGTTTTTAACATTTTCTCGTGGTTATCCAGTGACTCATGCTGAGATAATTGAGCTCTTTACCAAGGAGTATGGAGAAAATTGTGTTGAGGGAGTTTACATGCAACATGACAACAAAAGATCTTTCAATGCAAACGCAAATAGGAGCTGCGAGCAACAATCACTATTTGCGAGGCTTGTCTTGGACTCGGTTACTACCGTGGACCGCGTACTCGATGACGAGCAGAAAAAAGAGCTTATGATTTACGGAAAGAACATTTGGGCTCGTAAGTATGATAAGAGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

34.55

Weight (kDa)

7.61

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64870 AT3G45200 AT5G11220 AT5G24355
fragaria_vesca FvH4_2g29280
malus_domestica MD08G1149000.v1.1 MD15G1124100.v1.1
prunus_persica Prupe.1G479500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298091
rosa_laevigata RLG00000011535
rosa_multiflora Rmu_sc0002800.1_g000005
rosa_rugosa Rorug06G0278800
rosa_samantha Rh6AG388900 Rh6BG397200 Rh6CG403100 Rh6DG389700
rosa_wichuraiana Rw6G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 822
AciI CCGC 1 cut(s) 820
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 2 cut(s) 114, 256
AcsI RAATTY 1 cut(s) 77
AfaI GTAC 2 cut(s) 370, 825
AfiI CCNNNNNNNGG 2 cut(s) 254, 482
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 4 cut(s) 149, 417, 455, 742
AjuI GAANNNNNNNTTGG 2 cut(s) 856, 888
AluBI AGCT 5 cut(s) 95, 212, 670, 762, 850
AluI AGCT 5 cut(s) 95, 212, 670, 762, 850
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 2 cut(s) 9, 220
AlwI GGATC 1 cut(s) 176
Ama87I CYCGRG 2 cut(s) 131, 461
AoxI GGCC 3 cut(s) 86, 114, 256
ApeKI GCWGC 1 cut(s) 762
ApoI RAATTY 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspS9I GGNCC 3 cut(s) 70, 612, 817
AsuC2I CCSGG 2 cut(s) 462, 463
AsuHPI GGTGA 2 cut(s) 262, 373
AvaI CYCGRG 2 cut(s) 131, 461
AvaII GGWCC 3 cut(s) 70, 612, 817
BalI TGGCCA 1 cut(s) 116
BanII GRGCYC 2 cut(s) 672, 880
BauI CACGAG 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 672
BbvI GCAGC 1 cut(s) 749
BcnI CCSGG 2 cut(s) 462, 463
BcoDI GTCTC 2 cut(s) 9, 220
BglII AGATCT 1 cut(s) 734
BisI GCNGC 1 cut(s) 763
BlsI GCNGC 1 cut(s) 764
Bme1390I CCNGG 2 cut(s) 462, 463
Bme18I GGWCC 3 cut(s) 70, 612, 817
BmeT110I CYCGRG 2 cut(s) 131, 461
BmgT120I GGNCC 3 cut(s) 70, 612, 817
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 2 cut(s) 462, 463
BmsI GCATC 3 cut(s) 489, 498, 600
BpiI GAAGAC 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 1 cut(s) 75
BpuEI CTTGAG 2 cut(s) 27, 67
BpuMI CCSGG 2 cut(s) 462, 463
Bsa29I ATCGAT 1 cut(s) 322
BsaJI CCNNGG 4 cut(s) 460, 461, 678, 813
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 482
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 644
Bse3DI GCAATG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 322
BseDI CCNNGG 4 cut(s) 460, 461, 678, 813
BseGI GGATG 4 cut(s) 165, 387, 472, 555
BseLI CCNNNNNNNGG 2 cut(s) 254, 482
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 3 cut(s) 87, 591, 648
BseNI ACTGG 1 cut(s) 644
BseXI GCAGC 1 cut(s) 749
Bsh1236I CGCG 1 cut(s) 822
Bsh1285I CGRYCG 1 cut(s) 610
BshFI GGCC 3 cut(s) 88, 116, 258
BshVI ATCGAT 1 cut(s) 322
BsiEI CGRYCG 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 672
BsiHKCI CYCGRG 2 cut(s) 131, 461
BsiSI CCGG 2 cut(s) 195, 462
BslI CCNNNNNNNGG 2 cut(s) 254, 482
BsmAI GTCTC 2 cut(s) 9, 220
BsnI GGCC 3 cut(s) 88, 116, 258
BsoBI CYCGRG 2 cut(s) 131, 461
Bsp1286I GDGCHC 2 cut(s) 672, 880
Bsp143I GATC 4 cut(s) 181, 309, 607, 734
BspACI CCGC 1 cut(s) 820
BspANI GGCC 3 cut(s) 88, 116, 258
BspCNI CTCAG 3 cut(s) 88, 592, 649
BspDI ATCGAT 1 cut(s) 322
BspFNI CGCG 1 cut(s) 822
BspLI GGNNCC 1 cut(s) 467
BspPI GGATC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 644
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 4 cut(s) 460, 461, 678, 813
BssMI GATC 4 cut(s) 181, 309, 607, 734
BssSI CACGAG 1 cut(s) 633
BssT1I CCWWGG 1 cut(s) 678
Bst2BI CACGAG 1 cut(s) 633
Bst4CI ACNGT 2 cut(s) 364, 814
Bst6I CTCTTC 2 cut(s) 12, 456
BstC8I GCNNGC 1 cut(s) 767
BstDEI CTNAG 3 cut(s) 96, 600, 657
BstDSI CCRYGG 1 cut(s) 813
BstF5I GGATG 4 cut(s) 165, 387, 472, 555
BstFNI CGCG 1 cut(s) 822
BstKTI GATC 4 cut(s) 184, 312, 610, 737
BstMAI GTCTC 2 cut(s) 9, 220
BstMBI GATC 4 cut(s) 181, 309, 607, 734
BstMCI CGRYCG 1 cut(s) 610
BstMWI GCNNNNNNNGC 3 cut(s) 200, 209, 228
BstNSI RCATGY 2 cut(s) 32, 718
BstSCI CCNGG 2 cut(s) 460, 461
BstUI CGCG 1 cut(s) 822
BstV1I GCAGC 1 cut(s) 749
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 2 cut(s) 181, 734
BstYI RGATCY 2 cut(s) 181, 734
Bsu15I ATCGAT 1 cut(s) 322
BsuRI GGCC 3 cut(s) 88, 116, 258
BsuTUI ATCGAT 1 cut(s) 322
BtgI CCRYGG 1 cut(s) 813
BtgZI GCGATG 1 cut(s) 577
BtsCI GGATG 4 cut(s) 165, 387, 472, 555
BtsIMutI CAGTG 4 cut(s) 233, 360, 597, 651
Cac8I GCNNGC 1 cut(s) 767
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 3 cut(s) 70, 612, 817
Cfr9I CCCGGG 1 cut(s) 461
ClaI ATCGAT 1 cut(s) 322
CseI GACGC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 369, 824
CviAII CATG 8 cut(s) 29, 38, 112, 120, 219, 653, 715, 722
CviQI GTAC 2 cut(s) 369, 824
DdeI CTNAG 3 cut(s) 96, 600, 657
DpnI GATC 4 cut(s) 183, 311, 609, 736
DpnII GATC 4 cut(s) 181, 309, 607, 734
DraI TTTAAA 1 cut(s) 240
EaeI YGGCCR 2 cut(s) 114, 256
Eam1104I CTCTTC 2 cut(s) 12, 456
EarI CTCTTC 2 cut(s) 12, 456
Ecl136II GAGCTC 1 cut(s) 670
Eco130I CCWWGG 1 cut(s) 678
Eco147I AGGCCT 1 cut(s) 88
Eco24I GRGCYC 2 cut(s) 672, 880
Eco47I GGWCC 3 cut(s) 70, 612, 817
Eco53kI GAGCTC 1 cut(s) 670
Eco88I CYCGRG 2 cut(s) 131, 461
EcoICRI GAGCTC 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 678
EcoT38I GRGCYC 2 cut(s) 672, 880
ErhI CCWWGG 1 cut(s) 678
FaeI CATG 8 cut(s) 32, 41, 115, 123, 222, 656, 718, 725
FatI CATG 8 cut(s) 28, 37, 111, 119, 218, 652, 714, 721
Fnu4HI GCNGC 1 cut(s) 763
FokI GGATG 4 cut(s) 152, 374, 459, 542
FriOI GRGCYC 2 cut(s) 672, 880
Fsp4HI GCNGC 1 cut(s) 763
GluI GCNGC 1 cut(s) 763
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 3 cut(s) 88, 116, 258
HapII CCGG 2 cut(s) 195, 462
HgaI GACGC 1 cut(s) 440
Hin1II CATG 8 cut(s) 32, 41, 115, 123, 222, 656, 718, 725
HinfI GANTC 6 cut(s) 98, 261, 342, 375, 649, 800
HpaII CCGG 2 cut(s) 195, 462
HphI GGTGA 2 cut(s) 262, 373
Hpy166II GTNNAC 2 cut(s) 712, 817
Hpy188I TCNGA 3 cut(s) 285, 477, 612
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 712, 817
HpyAV CCTTC 2 cut(s) 401, 420
HpyCH4III ACNGT 2 cut(s) 364, 814
HpyCH4V TGCA 3 cut(s) 591, 718, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 209, 228
HpyF3I CTNAG 3 cut(s) 96, 600, 657
Hsp92II CATG 8 cut(s) 32, 41, 115, 123, 222, 656, 718, 725
Kzo9I GATC 4 cut(s) 181, 309, 607, 734
LmnI GCTCC 1 cut(s) 759
LpnPI CCDG 7 cut(s) 105, 208, 324, 385, 475, 562, 657
Lsp1109I GCAGC 1 cut(s) 749
LweI GCATC 3 cut(s) 489, 498, 600
MaeIII GTNAC 3 cut(s) 99, 646, 805
MalI GATC 4 cut(s) 183, 311, 609, 736
MboI GATC 4 cut(s) 181, 309, 607, 734
MboII GAAGA 5 cut(s) 370, 395, 405, 414, 443
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 2 cut(s) 181, 734
MhlI GDGCHC 2 cut(s) 672, 880
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 7 cut(s) 65, 77, 252, 523, 586, 663, 694
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 3 cut(s) 107, 643, 794
MmeI TCCRAC 1 cut(s) 555
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
MseI TTAA 3 cut(s) 239, 356, 623
MslI CAYNNNNRTG 1 cut(s) 494
Msp20I TGGCCA 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 2 cut(s) 195, 462
MspR9I CCNGG 2 cut(s) 462, 463
MunI CAATTG 1 cut(s) 252
MvnI CGCG 1 cut(s) 822
MwoI GCNNNNNNNGC 3 cut(s) 200, 209, 228
NciI CCSGG 2 cut(s) 462, 463
NdeII GATC 4 cut(s) 181, 309, 607, 734
NlaIII CATG 8 cut(s) 32, 41, 115, 123, 222, 656, 718, 725
NlaIV GGNNCC 1 cut(s) 467
NmuCI GTSAC 2 cut(s) 99, 646
NspI RCATGY 2 cut(s) 32, 718
PaeR7I CTCGAG 1 cut(s) 131
PceI AGGCCT 1 cut(s) 88
PciI ACATGT 1 cut(s) 28
PfeI GAWTC 3 cut(s) 261, 342, 375
PkrI GCNGC 1 cut(s) 764
Ple19I CGATCG 1 cut(s) 610
PleI GAGTC 3 cut(s) 106, 643, 794
PpsI GAGTC 3 cut(s) 106, 643, 794
PscI ACATGT 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 672
PspN4I GGNNCC 1 cut(s) 467
PspPI GGNCC 3 cut(s) 70, 612, 817
PspXI VCTCGAGB 1 cut(s) 131
PsuI RGATCY 2 cut(s) 181, 734
PvuI CGATCG 1 cut(s) 610
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 370, 825
RsaNI GTAC 2 cut(s) 369, 824
RseI CAYNNNNRTG 1 cut(s) 494
SacI GAGCTC 1 cut(s) 672
SaqAI TTAA 3 cut(s) 239, 356, 623
SatI GCNGC 1 cut(s) 763
Sau3AI GATC 4 cut(s) 181, 309, 607, 734
Sau96I GGNCC 3 cut(s) 70, 612, 817
SchI GAGTC 3 cut(s) 107, 643, 794
ScrFI CCNGG 2 cut(s) 462, 463
SduI GDGCHC 2 cut(s) 672, 880
SetI ASST 8 cut(s) 97, 214, 412, 451, 617, 672, 764, 852
SfaNI GCATC 3 cut(s) 489, 498, 600
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 3 cut(s) 70, 612, 817
SlaI CTCGAG 1 cut(s) 131
SmaI CCCGGG 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 3 cut(s) 42, 82, 131
SmoI CTYRAG 3 cut(s) 42, 82, 131
Sse9I AATT 7 cut(s) 65, 77, 252, 523, 586, 663, 694
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 1 cut(s) 820
SstI GAGCTC 1 cut(s) 672
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 460, 461
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 2 cut(s) 364, 814
TaqI TCGA 3 cut(s) 132, 322, 828
TasI AATT 7 cut(s) 65, 77, 252, 523, 586, 663, 694
TfiI GAWTC 3 cut(s) 261, 342, 375
Tru1I TTAA 3 cut(s) 239, 356, 623
Tru9I TTAA 3 cut(s) 239, 356, 623
TscAI CASTG 4 cut(s) 233, 367, 604, 651
TseFI GTSAC 2 cut(s) 99, 646
TseI GCWGC 1 cut(s) 762
Tsp45I GTSAC 2 cut(s) 99, 646
TspDTI ATGAA 2 cut(s) 522, 544
TspGWI ACGGA 1 cut(s) 876
TspMI CCCGGG 1 cut(s) 461
TspRI CASTG 4 cut(s) 233, 367, 604, 651
VpaK11BI GGWCC 3 cut(s) 70, 612, 817
XapI RAATTY 1 cut(s) 77
XceI RCATGY 2 cut(s) 32, 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 567
XhoI CTCGAG 1 cut(s) 131
XmaI CCCGGG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.