MD15G1124100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014086
Physical Location & Seq
Reverse (-)
8986864 .. 8987742
879 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1124100.v1.1.491

Sequence Viewer

Length: 879 bp
ATGTCCTCCTCCAGTGTAATTAGCCAAGTGACACTCCACACTCTCAACAACACTAATCGAGAAATTTTTTCTCGATTGGTGCTCACTCTCCACCGTGATGTAGCGGAGTCCTTGATGATTATGGCGTTGTGGCTCTTCCTTCAGGAGAAGGGCTACAACAAATTCGTGCACAGGATGGTGAGGCTTCCAAACGCTGTACTCAGTGCTTTAGCTGACGACGCTGTCCAATGTTTGAAGTACCTAGAGTCTACCGATTGCCCTAGAACCATTTCAAGAACTGCACCCAATGGTGGTAGCCTACGCATTACTAAAAGGCTCCTGGGGAAGGAAATTTCACTCCAAATCATCAGCGTAAACCGATACACATTAATCAGTGGGGTAAAAAATTTCGTTACCAATGTTTGTGCTAGAATTTTTACCGACATTTTGCAGAGGATTTTGTTTCCTCTGTCCCATGCACATTTTAGTCCGGAGGATACTTTTGTAATCCCGTTATTCCCAAACGGGCTGTTTGGTAACGTGAAAATAGTGAACCCCGATAGCTCCATCGACCATGGTGTTCCCACCGGAGGGTTATGGGGTTGGAGCCCCTTTCTTGAACTGTCCGTGGATGATCGGACTATGTTCCTAACATTTTCTAGAGGCTTCCCTGTGTCACAATATGAGGTCAAGGAGTTATTCATGGAACTTTTGGGATCTGAAACCTGTGTGGAAAATGTGCAAATGGAAAATGTTCCTCCTAACGAACAACCTTTGTTTGCTAAATTGGTGTTGAGTACCGTAGTTTATGTTGATCGTGTTCTGAAAGGTACTCGAGTTTCGAAGTTTAGGATCAATGGAAAACACATATGGGCTCGGAAGTATGAACGCAGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.15

Weight (kDa)

9.19

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64870 AT3G45200 AT5G11220 AT5G24355
fragaria_vesca FvH4_2g29280
malus_domestica MD08G1149000.v1.1 MD15G1124100.v1.1
prunus_persica Prupe.1G479500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298091
rosa_laevigata RLG00000011535
rosa_multiflora Rmu_sc0002800.1_g000005
rosa_rugosa Rorug06G0278800
rosa_samantha Rh6AG388900 Rh6BG397200 Rh6CG403100 Rh6DG389700
rosa_wichuraiana Rw6G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
AccI GTMKAC 1 cut(s) 248
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 1 cut(s) 104
AclWI GGATC 2 cut(s) 703, 839
AcsI RAATTY 5 cut(s) 63, 161, 330, 385, 411
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 4 cut(s) 198, 239, 778, 811
AfiI CCNNNNNNNGG 4 cut(s) 290, 325, 569, 570
AgsI TTSAA 3 cut(s) 235, 273, 599
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 2 cut(s) 212, 543
AluI AGCT 2 cut(s) 212, 543
Alw21I GWGCWC 2 cut(s) 84, 171
Alw44I GTGCAC 1 cut(s) 167
AlwI GGATC 2 cut(s) 703, 839
Ama87I CYCGRG 1 cut(s) 813
Aor13HI TCCGGA 1 cut(s) 469
ApaLI GTGCAC 1 cut(s) 167
ApoI RAATTY 5 cut(s) 63, 161, 330, 385, 411
AseI ATTAAT 1 cut(s) 368
Asp700I GAANNNNTTC 2 cut(s) 268, 732
AsuHPI GGTGA 1 cut(s) 190
AsuII TTCGAA 1 cut(s) 821
AvaI CYCGRG 1 cut(s) 813
BaeGI GKGCMC 1 cut(s) 171
BaeI ACNNNNGTAYC 4 cut(s) 468, 501, 801, 834
BanII GRGCYC 2 cut(s) 590, 856
Bbv12I GWGCWC 2 cut(s) 84, 171
BccI CCATC 2 cut(s) 169, 554
BciT130I CCWGG 1 cut(s) 320
BciVI GTATCC 1 cut(s) 469
BfaI CTAG 4 cut(s) 242, 261, 408, 639
BfuI GTATCC 1 cut(s) 469
Bme1390I CCNGG 1 cut(s) 320
BmeT110I CYCGRG 1 cut(s) 813
BmiI GGNNCC 2 cut(s) 317, 587
BmrFI CCNGG 1 cut(s) 320
Bpu14I TTCGAA 1 cut(s) 821
BsaJI CCNNGG 3 cut(s) 319, 553, 606
BsaWI WCCGGW 2 cut(s) 469, 566
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 325, 569, 570
Bse1I ACTGG 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 469
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 3 cut(s) 319, 553, 606
BseGI GGATG 2 cut(s) 180, 616
BseLI CCNNNNNNNGG 4 cut(s) 290, 325, 569, 570
BseMII CTCAG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 12
BseSI GKGCMC 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 84, 171
BsiHKCI CYCGRG 1 cut(s) 813
BsiSI CCGG 2 cut(s) 470, 567
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 4 cut(s) 290, 325, 569, 570
BsmFI GGGAC 1 cut(s) 436
BsoBI CYCGRG 1 cut(s) 813
Bsp119I TTCGAA 1 cut(s) 821
Bsp1286I GDGCHC 4 cut(s) 84, 171, 590, 856
Bsp13I TCCGGA 1 cut(s) 469
Bsp143I GATC 4 cut(s) 613, 695, 793, 831
Bsp19I CCATGG 1 cut(s) 553
BspACI CCGC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 213
BspEI TCCGGA 1 cut(s) 469
BspLI GGNNCC 2 cut(s) 317, 587
BspPI GGATC 2 cut(s) 703, 839
BspQI GCTCTTC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 821
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 3 cut(s) 319, 553, 606
BssMI GATC 4 cut(s) 613, 695, 793, 831
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 3 cut(s) 95, 603, 781
Bst6I CTCTTC 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 821
BstDEI CTNAG 1 cut(s) 200
BstDSI CCRYGG 2 cut(s) 553, 606
BstENI CCTNNNNNAGG 1 cut(s) 323
BstF5I GGATG 2 cut(s) 180, 616
BstKTI GATC 4 cut(s) 616, 698, 796, 834
BstMBI GATC 4 cut(s) 613, 695, 793, 831
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 695
BstYI RGATCY 1 cut(s) 695
BsuI GTATCC 1 cut(s) 469
BtgI CCRYGG 2 cut(s) 553, 606
BtsCI GGATG 2 cut(s) 180, 616
BtsIMutI CAGTG 3 cut(s) 19, 208, 379
CseI GACGC 1 cut(s) 227
Csp6I GTAC 4 cut(s) 197, 238, 777, 810
CviAII CATG 3 cut(s) 455, 554, 682
CviQI GTAC 4 cut(s) 197, 238, 777, 810
DdeI CTNAG 1 cut(s) 200
DpnI GATC 4 cut(s) 615, 697, 795, 833
DpnII GATC 4 cut(s) 613, 695, 793, 831
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 553
Eco24I GRGCYC 2 cut(s) 590, 856
Eco57I CTGAAG 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 813
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 553
EcoT38I GRGCYC 2 cut(s) 590, 856
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 3 cut(s) 458, 557, 685
FaqI GGGAC 1 cut(s) 436
FatI CATG 3 cut(s) 454, 553, 681
FauNDI CATATG 1 cut(s) 848
FblI GTMKAC 1 cut(s) 248
FokI GGATG 2 cut(s) 187, 623
FriOI GRGCYC 2 cut(s) 590, 856
FspBI CTAG 4 cut(s) 242, 261, 408, 639
HapII CCGG 2 cut(s) 470, 567
HgaI GACGC 1 cut(s) 227
Hin1II CATG 3 cut(s) 458, 557, 685
HinfI GANTC 2 cut(s) 107, 245
HpaII CCGG 2 cut(s) 470, 567
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 4 cut(s) 169, 249, 355, 532
Hpy188I TCNGA 4 cut(s) 618, 700, 804, 858
Hpy188III TCNNGA 7 cut(s) 59, 72, 143, 273, 470, 596, 639
Hpy8I GTNNAC 4 cut(s) 169, 249, 355, 532
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 142, 149, 319
HpyCH4III ACNGT 3 cut(s) 95, 603, 781
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 5 cut(s) 169, 281, 430, 458, 721
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 3 cut(s) 458, 557, 685
Kpn2I TCCGGA 1 cut(s) 469
Kzo9I GATC 4 cut(s) 613, 695, 793, 831
LguI GCTCTTC 1 cut(s) 140
LmnI GCTCC 3 cut(s) 321, 548, 585
MaeI CTAG 4 cut(s) 242, 261, 408, 639
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 4 cut(s) 28, 391, 515, 654
MalI GATC 4 cut(s) 615, 697, 795, 833
MboI GATC 4 cut(s) 613, 695, 793, 831
MboII GAAGA 1 cut(s) 127
MflI RGATCY 1 cut(s) 695
MhlI GDGCHC 4 cut(s) 84, 171, 590, 856
MluCI AATT 7 cut(s) 18, 63, 161, 330, 385, 411, 764
MlyI GAGTC 2 cut(s) 116, 254
MmeI TCCRAC 1 cut(s) 563
MroI TCCGGA 1 cut(s) 469
MroXI GAANNNNTTC 2 cut(s) 268, 732
MseI TTAA 1 cut(s) 368
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 2 cut(s) 470, 567
MspR9I CCNGG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 218
NcoI CCATGG 1 cut(s) 553
NdeI CATATG 1 cut(s) 848
NdeII GATC 4 cut(s) 613, 695, 793, 831
NlaIII CATG 3 cut(s) 458, 557, 685
NlaIV GGNNCC 2 cut(s) 317, 587
NmuCI GTSAC 2 cut(s) 28, 654
NspV TTCGAA 1 cut(s) 821
PaeR7I CTCGAG 1 cut(s) 813
PciSI GCTCTTC 1 cut(s) 140
PdmI GAANNNNTTC 2 cut(s) 268, 732
PflFI GACNNNGTC 1 cut(s) 221
PleI GAGTC 2 cut(s) 115, 253
PpsI GAGTC 2 cut(s) 115, 253
PshBI ATTAAT 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 317, 587
PspXI VCTCGAGB 1 cut(s) 813
PsuI RGATCY 1 cut(s) 695
PsyI GACNNNGTC 1 cut(s) 221
RsaI GTAC 4 cut(s) 198, 239, 778, 811
RsaNI GTAC 4 cut(s) 197, 238, 777, 810
RseI CAYNNNNRTG 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 368
Sau3AI GATC 4 cut(s) 613, 695, 793, 831
SchI GAGTC 2 cut(s) 116, 254
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 4 cut(s) 84, 171, 590, 856
SetI ASST 8 cut(s) 214, 243, 522, 545, 669, 707, 754, 811
Sfr274I CTCGAG 1 cut(s) 813
SfuI TTCGAA 1 cut(s) 821
SlaI CTCGAG 1 cut(s) 813
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 813
SmoI CTYRAG 1 cut(s) 813
Sse9I AATT 7 cut(s) 18, 63, 161, 330, 385, 411, 764
SsiI CCGC 1 cut(s) 104
SspMI CTAG 4 cut(s) 242, 261, 408, 639
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 3 cut(s) 95, 603, 781
TaiI ACGT 1 cut(s) 522
TaqI TCGA 5 cut(s) 58, 73, 549, 814, 821
TasI AATT 7 cut(s) 18, 63, 161, 330, 385, 411, 764
TatI WGTACW 1 cut(s) 196
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 3 cut(s) 19, 208, 379
TseFI GTSAC 2 cut(s) 28, 654
Tsp45I GTSAC 2 cut(s) 28, 654
TspDTI ATGAA 2 cut(s) 670, 879
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 3 cut(s) 19, 208, 379
Tth111I GACNNNGTC 1 cut(s) 221
VneI GTGCAC 1 cut(s) 167
VspI ATTAAT 1 cut(s) 368
XagI CCTNNNNNAGG 1 cut(s) 323
XapI RAATTY 5 cut(s) 63, 161, 330, 385, 411
XbaI TCTAGA 1 cut(s) 638
XhoI CTCGAG 1 cut(s) 813
XmiI GTMKAC 1 cut(s) 248
XmnI GAANNNNTTC 2 cut(s) 268, 732
XspI CTAG 4 cut(s) 242, 261, 408, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.