FvH4_2g29280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014086
Physical Location & Seq
Forward (+)
22737266 .. 22738331
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29280.t1

Sequence Viewer

Length: 879 bp
ATGAGTACCTCCACTAATAGTGTCACCGAAGAACAACTTCACGCTTTCTATAGGATTGATCGAGAGATCTTCTCTCGATTGGTCGTGAGCTTCATGCGTGACCCAGCTGAATCTCTTATGGTCATGGCCTTATGGCAATGGCTGGAGAAGGACTACCGCAACATCCTAGTCAAGATGTCGGGGCTTGCTGACAACATAGTCAATGGCTTGGCTGATGAAGCTGTGCTTTGCTTGAGGTGTTTGGACCACACTACTAGTAACAGCTCTCTTTTATGTCTAGTGCCAAACGGTGGAATGATCCTCACCTCTACGCTCACGCAGAAGGAAATCACACTCCATATGTTCATTCAGAACAGATACACCACAATCTGTGGGGTAAAGAATTTTCTCACTAATGTTTGTGCTCGTATTTTTACCGATATTTTGCAGAGGGTTTTGCCTGGTGCGAATCCGATACTGTCACAGTTTATTCATCCACAGCAGCCCCTTGTGATTCCGGGATTTCCACATCCAGTTTTTGGTGCCCTCAATGTAATGCCTAAATTTGTTACAGACTTTACTCCCACAGGAGGGCTATGGGGCTGGAGTCCATCTATTGAGTTATCTGTCGATGATAAGACTATGTTTCTCACATTCTCTAGGGGGTTTCATGTGTCAGTGGAAGAAGTGAAGCAGCTTTTTTCAAATGTTCTTGGGATGGAGAGGTGTGTTGAAGATGTGGACATGGAAAATGTTCCTTCGGATGAACAACCATTGTATGCTAAAATGGTGTTATCTTCTGTCAAACTTGTTGATAAGATCTTGAAAGGGAATCGCGTCGCAAAGTTTCGGATCAATGGCAAGCACATTTGGGCACGAAAATATGAACGCCGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.16

Weight (kDa)

7.04

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64870 AT3G45200 AT5G11220 AT5G24355
fragaria_vesca FvH4_2g29280
malus_domestica MD08G1149000.v1.1 MD15G1124100.v1.1
prunus_persica Prupe.1G479500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298091
rosa_laevigata RLG00000011535
rosa_multiflora Rmu_sc0002800.1_g000005
rosa_rugosa Rorug06G0278800
rosa_samantha Rh6AG388900 Rh6BG397200 Rh6CG403100 Rh6DG389700
rosa_wichuraiana Rw6G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 521
AccB7I CCANNNNNTGG 2 cut(s) 290, 518
AccII CGCG 1 cut(s) 816
AciI CCGC 1 cut(s) 157
AclWI GGATC 2 cut(s) 292, 839
AcsI RAATTY 2 cut(s) 382, 542
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 4 cut(s) 290, 518, 569, 570
AgsI TTSAA 3 cut(s) 684, 713, 805
AhlI ACTAGT 1 cut(s) 254
AjnI CCWGG 1 cut(s) 439
AluBI AGCT 5 cut(s) 90, 107, 221, 264, 676
AluI AGCT 5 cut(s) 90, 107, 221, 264, 676
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 1 cut(s) 867
AlwI GGATC 2 cut(s) 292, 839
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 481, 673
ApoI RAATTY 2 cut(s) 382, 542
Asp700I GAANNNNTTC 2 cut(s) 36, 732
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 498
AsuHPI GGTGA 2 cut(s) 16, 295
AvaII GGWCC 1 cut(s) 244
BaeGI GKGCMC 2 cut(s) 526, 856
BanI GGYRCC 1 cut(s) 521
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 2 cut(s) 493, 685
BccI CCATC 2 cut(s) 598, 691
BciT130I CCWGG 1 cut(s) 441
BcnI CCSGG 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 867
BcuI ACTAGT 1 cut(s) 254
BfaI CTAG 5 cut(s) 167, 255, 278, 639, 877
BfmI CTRYAG 1 cut(s) 49
BglII AGATCT 2 cut(s) 66, 798
BisI GCNGC 2 cut(s) 482, 674
BlsI GCNGC 2 cut(s) 483, 675
Bme1390I CCNGG 2 cut(s) 441, 498
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 523
BmrFI CCNGG 2 cut(s) 441, 498
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BpmI CTGGAG 2 cut(s) 164, 604
BpuEI CTTGAG 1 cut(s) 253
BpuMI CCSGG 1 cut(s) 498
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 518, 569, 570
Bse1I ACTGG 1 cut(s) 512
Bse3DI GCAATG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 441
BseGI GGATG 5 cut(s) 162, 472, 508, 702, 748
BseLI CCNNNNNNNGG 4 cut(s) 290, 518, 569, 570
BseMI GCAATG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 512
BseSI GKGCMC 2 cut(s) 526, 856
BseXI GCAGC 2 cut(s) 493, 685
BseYI CCCAGC 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 816
BshFI GGCC 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 521
BsiHKAI GWGCWC 1 cut(s) 406
BsiSI CCGG 1 cut(s) 497
BslI CCNNNNNNNGG 4 cut(s) 290, 518, 569, 570
BsmAI GTCTC 1 cut(s) 867
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 3 cut(s) 406, 526, 856
Bsp143I GATC 5 cut(s) 58, 66, 297, 798, 831
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 128
BspFNI CGCG 1 cut(s) 816
BspLI GGNNCC 1 cut(s) 523
BspPI GGATC 2 cut(s) 292, 839
BspT107I GGYRCC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 143
BsrI ACTGG 1 cut(s) 512
BssMI GATC 5 cut(s) 58, 66, 297, 798, 831
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 3 cut(s) 290, 459, 465
BstC8I GCNNGC 2 cut(s) 186, 842
BstF5I GGATG 5 cut(s) 162, 472, 508, 702, 748
BstFNI CGCG 1 cut(s) 816
BstKTI GATC 5 cut(s) 61, 69, 300, 801, 834
BstMAI GTCTC 1 cut(s) 867
BstMBI GATC 5 cut(s) 58, 66, 297, 798, 831
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 441
BstSCI CCNGG 2 cut(s) 439, 496
BstSFI CTRYAG 1 cut(s) 49
BstSLI GKGCMC 2 cut(s) 526, 856
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 2 cut(s) 493, 685
BstX2I RGATCY 2 cut(s) 66, 798
BstYI RGATCY 2 cut(s) 66, 798
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 5 cut(s) 162, 472, 508, 702, 748
BtsIMutI CAGTG 1 cut(s) 663
Cac8I GCNNGC 2 cut(s) 186, 842
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 1 cut(s) 805
Csp6I GTAC 1 cut(s) 6
CviAII CATG 4 cut(s) 94, 124, 650, 724
CviQI GTAC 1 cut(s) 6
DpnI GATC 5 cut(s) 60, 68, 299, 800, 833
DpnII GATC 5 cut(s) 58, 66, 297, 798, 831
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 439
FaeI CATG 4 cut(s) 97, 127, 653, 727
FalI AAGNNNNNCTT 4 cut(s) 21, 53, 210, 242
FatI CATG 4 cut(s) 93, 123, 649, 723
FauNDI CATATG 1 cut(s) 339
Fnu4HI GCNGC 2 cut(s) 482, 674
FokI GGATG 5 cut(s) 149, 459, 495, 709, 755
Fsp4HI GCNGC 2 cut(s) 482, 674
FspBI CTAG 5 cut(s) 167, 255, 278, 639, 877
GluI GCNGC 2 cut(s) 482, 674
GsaI CCCAGC 1 cut(s) 107
GsuI CTGGAG 2 cut(s) 164, 604
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 497
HgaI GACGC 1 cut(s) 805
Hin1II CATG 4 cut(s) 97, 127, 653, 727
HinfI GANTC 5 cut(s) 110, 448, 493, 586, 811
HpaII CCGG 1 cut(s) 497
HphI GGTGA 2 cut(s) 16, 295
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 4 cut(s) 351, 453, 742, 831
Hpy188III TCNNGA 5 cut(s) 62, 75, 85, 172, 802
Hpy8I GTNNAC 1 cut(s) 721
Hpy99I CGWCG 1 cut(s) 821
HpyAV CCTTC 3 cut(s) 142, 316, 747
HpyCH4III ACNGT 3 cut(s) 290, 459, 465
HpyCH4V TGCA 1 cut(s) 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
Hsp92II CATG 4 cut(s) 97, 127, 653, 727
Kzo9I GATC 5 cut(s) 58, 66, 297, 798, 831
LpnPI CCDG 8 cut(s) 117, 128, 426, 453, 510, 525, 552, 568
Lsp1109I GCAGC 2 cut(s) 493, 685
MaeI CTAG 5 cut(s) 167, 255, 278, 639, 877
MaeIII GTNAC 5 cut(s) 22, 98, 257, 459, 547
MalI GATC 5 cut(s) 60, 68, 299, 800, 833
MboI GATC 5 cut(s) 58, 66, 297, 798, 831
MboII GAAGA 5 cut(s) 41, 61, 674, 725, 768
MflI RGATCY 2 cut(s) 66, 798
MhlI GDGCHC 3 cut(s) 406, 526, 856
MluCI AATT 2 cut(s) 382, 542
MlyI GAGTC 1 cut(s) 595
MnlI CCTC 8 cut(s) 19, 228, 311, 316, 423, 536, 563, 696
MroXI GAANNNNTTC 2 cut(s) 36, 732
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 2 cut(s) 441, 498
MvaI CCWGG 1 cut(s) 441
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 498
NdeI CATATG 1 cut(s) 339
NdeII GATC 5 cut(s) 58, 66, 297, 798, 831
NlaIII CATG 4 cut(s) 97, 127, 653, 727
NlaIV GGNNCC 1 cut(s) 523
NmuCI GTSAC 3 cut(s) 22, 98, 459
PdmI GAANNNNTTC 2 cut(s) 36, 732
PfeI GAWTC 4 cut(s) 110, 448, 493, 811
PflMI CCANNNNNTGG 2 cut(s) 290, 518
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 2 cut(s) 483, 675
PleI GAGTC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 439
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 523
PspPI GGNCC 1 cut(s) 244
PsuI RGATCY 2 cut(s) 66, 798
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SatI GCNGC 2 cut(s) 482, 674
Sau3AI GATC 5 cut(s) 58, 66, 297, 798, 831
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 595
ScrFI CCNGG 2 cut(s) 441, 498
SduI GDGCHC 3 cut(s) 406, 526, 856
SetI ASST 9 cut(s) 11, 92, 109, 223, 239, 266, 308, 678, 707
SfcI CTRYAG 1 cut(s) 49
SinI GGWCC 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SpeI ACTAGT 1 cut(s) 254
Sse9I AATT 2 cut(s) 382, 542
SsiI CCGC 1 cut(s) 157
SspMI CTAG 5 cut(s) 167, 255, 278, 639, 877
StyD4I CCNGG 2 cut(s) 439, 496
TaaI ACNGT 3 cut(s) 290, 459, 465
TaqI TCGA 3 cut(s) 61, 76, 609
TasI AATT 2 cut(s) 382, 542
TfiI GAWTC 4 cut(s) 110, 448, 493, 811
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 3 cut(s) 22, 98, 459
TseI GCWGC 2 cut(s) 481, 673
Tsp45I GTSAC 3 cut(s) 22, 98, 459
TspDTI ATGAA 7 cut(s) 82, 231, 334, 461, 638, 759, 879
TspRI CASTG 1 cut(s) 663
Van91I CCANNNNNTGG 2 cut(s) 290, 518
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 2 cut(s) 382, 542
XmnI GAANNNNTTC 2 cut(s) 36, 732
XspI CTAG 5 cut(s) 167, 255, 278, 639, 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.