AT5G24355

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014086
Physical Location & Seq
Reverse (-)
8314679 .. 8315438
760 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24355.1

Sequence Viewer

Length: 342 bp
ATGATGCATGATGTCTCTGTTGGGGATAACTCCATCGCGGATGCTAACGAACGGACCTTGTATATAACGTTTCCTCGTGGGGTTCCTATGTCGCAAGAAGAGGTGATCAAGCAATGTTTCACCGAACAATATGGAGAAAATTGTGTTCAAGGCATTGACATGCAACATGACGATGGTCAAGAGCAAGCACTATTTGCGAAGCTGGTCTTGGACTCGGTCGCTACCATGAATCGCGTACTCAACCATTGGGAAACGGTAAAATTGTGGTCTTTATCAGAAAATGATTCAGTAAAGCTGCGGATCAACGGGAAGGTCTTTTGGGCTCGTAAGCATACGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.0

Weight (kDa)

5.48

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64870 AT3G45200 AT5G11220 AT5G24355
fragaria_vesca FvH4_2g29280
malus_domestica MD08G1149000.v1.1 MD15G1124100.v1.1
prunus_persica Prupe.1G479500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298091
rosa_laevigata RLG00000011535
rosa_multiflora Rmu_sc0002800.1_g000005
rosa_rugosa Rorug06G0278800
rosa_samantha Rh6AG388900 Rh6BG397200 Rh6CG403100 Rh6DG389700
rosa_wichuraiana Rw6G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 38, 234
AciI CCGC 2 cut(s) 38, 298
AclI AACGTT 1 cut(s) 68
AclWI GGATC 1 cut(s) 308
AfaI GTAC 1 cut(s) 237
AgsI TTSAA 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 2 cut(s) 202, 295
AluI AGCT 2 cut(s) 202, 295
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 112, 115
AvaII GGWCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 325
BauI CACGAG 1 cut(s) 75
BbvI GCAGC 1 cut(s) 282
BccI CCATC 2 cut(s) 41, 167
BclI TGATCA 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 19
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 1 cut(s) 31
BoxI GACNNNNGTC 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 119
BseGI GGATG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 282
Bsh1236I CGCG 2 cut(s) 38, 234
Bsh1285I CGRYCG 1 cut(s) 219
BsiEI CGRYCG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 2 cut(s) 105, 300
BspACI CCGC 2 cut(s) 38, 298
BspFNI CGCG 2 cut(s) 38, 234
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 119
BssMI GATC 2 cut(s) 105, 300
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 93
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 186
BstF5I GGATG 1 cut(s) 46
BstFNI CGCG 2 cut(s) 38, 234
BstKTI GATC 2 cut(s) 108, 303
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 2 cut(s) 105, 300
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 163
BstPAI GACNNNNGTC 1 cut(s) 174
BstUI CGCG 2 cut(s) 38, 234
BstV1I GCAGC 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 236
CviAII CATG 4 cut(s) 8, 160, 167, 226
CviJI RGCY 3 cut(s) 202, 295, 323
CviKI_1 RGCY 3 cut(s) 202, 295, 323
CviQI GTAC 1 cut(s) 236
DpnI GATC 2 cut(s) 107, 302
DpnII GATC 2 cut(s) 105, 300
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 325
FaeI CATG 4 cut(s) 11, 163, 170, 229
FaiI YATR 9 cut(s) 9, 63, 65, 89, 132, 161, 168, 227, 333
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 4 cut(s) 7, 159, 166, 225
FbaI TGATCA 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 1 cut(s) 53
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 296
Hin1II CATG 4 cut(s) 11, 163, 170, 229
HinfI GANTC 3 cut(s) 212, 229, 284
HphI GGTGA 2 cut(s) 112, 115
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 7, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 4 cut(s) 11, 163, 170, 229
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 2 cut(s) 105, 300
LpnPI CCDG 1 cut(s) 188
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 31
MaeII ACGT 1 cut(s) 68
MalI GATC 2 cut(s) 107, 302
MboI GATC 2 cut(s) 105, 300
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 2 cut(s) 139, 260
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 2 cut(s) 84, 94
Mph1103I ATGCAT 1 cut(s) 9
MslI CAYNNNNRTG 2 cut(s) 158, 171
MvnI CGCG 2 cut(s) 38, 234
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 2 cut(s) 105, 300
NlaIII CATG 4 cut(s) 11, 163, 170, 229
NlaIV GGNNCC 1 cut(s) 84
NsiI ATGCAT 1 cut(s) 9
NspI RCATGY 1 cut(s) 163
PfeI GAWTC 2 cut(s) 229, 284
PflFI GACNNNGTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PshAI GACNNNNGTC 1 cut(s) 174
Psp1406I AACGTT 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 54
PsyI GACNNNGTC 1 cut(s) 215
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
RseI CAYNNNNRTG 2 cut(s) 158, 171
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 2 cut(s) 105, 300
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 1 cut(s) 206
SduI GDGCHC 1 cut(s) 325
SetI ASST 6 cut(s) 59, 71, 105, 204, 297, 315
SfaNI GCATC 1 cut(s) 31
SinI GGWCC 1 cut(s) 54
SmiMI CAYNNNNRTG 2 cut(s) 158, 171
Sse9I AATT 2 cut(s) 139, 260
SsiI CCGC 2 cut(s) 38, 298
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 1 cut(s) 71
TaqII GACCGA 1 cut(s) 205
TasI AATT 2 cut(s) 139, 260
TfiI GAWTC 2 cut(s) 229, 284
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 1 cut(s) 67
Tth111I GACNNNGTC 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 54
XceI RCATGY 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.