Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013089

Physical Location & Seq

Genomic Coordinates Reverse (-)

24248727 .. 24250436

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCGGCGAGAGGTGCTATGCTTCGATACCTGAGAGTCAACGTCAATCCAACAATTCAAAACCCTAGAGAATGTGTACTTCCTTTCTCCATTCTCCTTCGTCGTTTCTCCGAGGAAGTTAGAGGCTCTTTCCTTGACAAATCTGAGGTCACAGATCGAGTTCTCTCTGTCGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTAACACCAAAAGCCAATTTCCAAAATGATCTAGGGTTGGACAGTTTGGACAGTGTGGAAGTTGTGATGGCATTGGAGGAGGAATTTGGGTTTGAGATCCCTGATAATGAAGCAGACAAGATCCAGTCCATCGATCTAGCCGTTGACTTTATTGCTTCTCATCCTCAGGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0046872 GO:0046914 GO:0048037 GO:0050897 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

126

Amino Acids

14.17

Weight (kDa)

4.87

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	53 - 117	1.3e-11	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65290
fragaria_vesca	FvH4_6g00220
malus_domestica	MD04G1247100.v1.1 MD12G1263100.v1.1
prunus_persica	Prupe.6G363300_v2.0.a1
pyrus_communis	pycom04g21780 pycom12g24080
rosa_chinensis	RchiOBHm_Chr3g0447591
rosa_laevigata	RLG00000025986
rosa_multiflora	Rmu_sc0026794.1_g000001 Rmu_sc0037294.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425800
rosa_rugosa	Rorug02G0603300
rosa_samantha	Rh3AG003500 Rh3BG003000 Rh3CG003300 Rh3DG003300
rosa_wichuraiana	Rw3G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	188, 295, 319
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	59
AlwI	GGATC	3 cut(s)	188, 295, 319
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AxyI	CCTNAGG	1 cut(s)	369
BccI	CCATC	2 cut(s)	265, 341
BceAI	ACGGC	1 cut(s)	329
BfaI	CTAG	3 cut(s)	66, 236, 341
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bsa29I	ATCGAT	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	328
Bse21I	CCTNAGG	1 cut(s)	369
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	364
BseMII	CTCAG	2 cut(s)	23, 135
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	296
BshVI	ATCGAT	1 cut(s)	336
Bsp143I	GATC	6 cut(s)	154, 193, 232, 300, 324, 337
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	24, 136
BspDI	ATCGAT	1 cut(s)	336
BspPI	GGATC	3 cut(s)	188, 295, 319
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	6 cut(s)	154, 193, 232, 300, 324, 337
Bst4CI	ACNGT	2 cut(s)	248, 257
BstDEI	CTNAG	5 cut(s)	32, 144, 201, 369, 375
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	6 cut(s)	157, 196, 235, 303, 327, 340
BstMBI	GATC	6 cut(s)	154, 193, 232, 300, 324, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	300, 324
BstYI	RGATCY	2 cut(s)	300, 324
Bsu15I	ATCGAT	1 cut(s)	336
Bsu36I	CCTNAGG	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	77
CviJI	RGCY	4 cut(s)	126, 218, 344, 374
CviKI_1	RGCY	4 cut(s)	126, 218, 344, 374
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	5 cut(s)	32, 144, 201, 369, 375
DpnI	GATC	6 cut(s)	156, 195, 234, 302, 326, 339
DpnII	GATC	6 cut(s)	154, 193, 232, 300, 324, 337
Eco81I	CCTNAGG	1 cut(s)	369
FaiI	YATR	1 cut(s)	20
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	66, 236, 341
GluI	GCNGC	1 cut(s)	6
HincII	GTYRAC	2 cut(s)	40, 349
HindII	GTYRAC	2 cut(s)	40, 349
HinfI	GANTC	1 cut(s)	36
Hpy166II	GTNNAC	3 cut(s)	40, 77, 349
Hpy188I	TCNGA	2 cut(s)	112, 145
Hpy8I	GTNNAC	3 cut(s)	40, 77, 349
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	2 cut(s)	107, 207
HpyCH4III	ACNGT	2 cut(s)	248, 257
HpyCH4IV	ACGT	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	5 cut(s)	32, 144, 201, 369, 375
HpySE526I	ACGT	1 cut(s)	42
Kzo9I	GATC	6 cut(s)	154, 193, 232, 300, 324, 337
LpnPI	CCDG	4 cut(s)	44, 318, 341, 356
MaeI	CTAG	3 cut(s)	66, 236, 341
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	148, 205
MalI	GATC	6 cut(s)	156, 195, 234, 302, 326, 339
MboI	GATC	6 cut(s)	154, 193, 232, 300, 324, 337
MflI	RGATCY	2 cut(s)	300, 324
MluCI	AATT	3 cut(s)	54, 220, 287
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	2 cut(s)	74, 222
MnlI	CCTC	7 cut(s)	5, 106, 116, 139, 274, 277, 378
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	6 cut(s)	154, 193, 232, 300, 324, 337
NmuCI	GTSAC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	300, 324
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	6 cut(s)	154, 193, 232, 300, 324, 337
SchI	GAGTC	1 cut(s)	45
SetI	ASST	5 cut(s)	16, 33, 45, 150, 207
Sse9I	AATT	3 cut(s)	54, 220, 287
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	3 cut(s)	66, 236, 341
TaaI	ACNGT	2 cut(s)	248, 257
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	25, 157, 336
TasI	AATT	3 cut(s)	54, 220, 287
TatI	WGTACW	1 cut(s)	76
TauI	GCSGC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	287
XspI	CTAG	3 cut(s)	66, 236, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.