Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013089

Physical Location & Seq

Genomic Coordinates Reverse (-)

24460593 .. 24462068

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g24080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCGGCGGCTGCGAGGAACTTACTACTCAAGCACCTGAGAGTGCAAGTTCAAACCGTGCCTTCGAACCCTAGCTCCACCGCCCCTCTCTTCCTATCCCCCTTTGCCGCTATCCGACGCCGTCTCTTCTCCGAGGAGGTCAGGGGCACCTTCCTCGACAAGTCTGAGGTCACCGATCGGGTCGTCTCCGTTGTCAAGAACTTCCAGAAGGTCGATCCTTCCAAGGTTACACCAAATGCTCATTTTGAAAGTGATCGATCATGGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0046872 GO:0046914 GO:0048037 GO:0050897 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

90

Amino Acids

9.95

Weight (kDa)

10.48

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65290
fragaria_vesca	FvH4_6g00220
malus_domestica	MD04G1247100.v1.1 MD12G1263100.v1.1
prunus_persica	Prupe.6G363300_v2.0.a1
pyrus_communis	pycom04g21780 pycom12g24080
rosa_chinensis	RchiOBHm_Chr3g0447591
rosa_laevigata	RLG00000025986
rosa_multiflora	Rmu_sc0026794.1_g000001 Rmu_sc0037294.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425800
rosa_rugosa	Rorug02G0603300
rosa_samantha	Rh3AG003500 Rh3BG003000 Rh3CG003300 Rh3DG003300
rosa_wichuraiana	Rw3G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	4 cut(s)	5, 8, 81, 108
AclWI	GGATC	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	53, 248
AloI	GAACNNNNNNTCC	2 cut(s)	59, 91
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	128, 190
AlwI	GGATC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	163
AsuII	TTCGAA	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	105
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BcoDI	GTCTC	2 cut(s)	128, 190
BfaI	CTAG	1 cut(s)	72
BisI	GCNGC	4 cut(s)	6, 9, 12, 108
BlsI	GCNGC	4 cut(s)	7, 10, 13, 109
BmiI	GGNNCC	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	14
Bsa29I	ATCGAT	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	132, 222
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
BseCI	ATCGAT	1 cut(s)	256
BseDI	CCNNGG	2 cut(s)	132, 222
BseMII	CTCAG	2 cut(s)	29, 156
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	256
BsiEI	CGRYCG	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	128, 190
BsmBI	CGTCTC	2 cut(s)	128, 190
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	175, 214, 253, 257
BspACI	CCGC	4 cut(s)	5, 8, 81, 108
BspCNI	CTCAG	2 cut(s)	30, 157
BspDI	ATCGAT	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	132, 222
BssMI	GATC	4 cut(s)	175, 214, 253, 257
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	95, 131
BstACI	GRCGYC	1 cut(s)	118
BstBI	TTCGAA	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	38, 165
BstEII	GGTNACC	1 cut(s)	169
BstKTI	GATC	4 cut(s)	178, 217, 256, 260
BstMAI	GTCTC	2 cut(s)	128, 190
BstMBI	GATC	4 cut(s)	175, 214, 253, 257
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	169
BstSLI	GKGCMC	1 cut(s)	149
Bsu15I	ATCGAT	1 cut(s)	256
BsuTUI	ATCGAT	1 cut(s)	256
ClaI	ATCGAT	1 cut(s)	256
CseI	GACGC	1 cut(s)	126
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	2 cut(s)	11, 75
CviKI_1	RGCY	2 cut(s)	11, 75
DdeI	CTNAG	2 cut(s)	38, 165
DpnI	GATC	4 cut(s)	177, 216, 255, 259
DpnII	GATC	4 cut(s)	175, 214, 253, 257
Eam1104I	CTCTTC	2 cut(s)	95, 131
EarI	CTCTTC	2 cut(s)	95, 131
Eco130I	CCWWGG	1 cut(s)	222
Eco91I	GGTNACC	1 cut(s)	169
EcoO65I	GGTNACC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	2 cut(s)	128, 190
FaeI	CATG	1 cut(s)	264
FaiI	YATR	1 cut(s)	262
FatI	CATG	1 cut(s)	260
Fnu4HI	GCNGC	4 cut(s)	6, 9, 12, 108
Fsp4HI	GCNGC	4 cut(s)	6, 9, 12, 108
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	4 cut(s)	6, 9, 12, 108
HgaI	GACGC	1 cut(s)	126
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	116, 133, 166
Hpy188III	TCNNGA	2 cut(s)	196, 205
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	4 cut(s)	72, 160, 202, 228
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	38, 165
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	264
Kzo9I	GATC	4 cut(s)	175, 214, 253, 257
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	3 cut(s)	50, 127, 218
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	169, 226
MalI	GATC	4 cut(s)	177, 216, 255, 259
MboI	GATC	4 cut(s)	175, 214, 253, 257
MboII	GAAGA	2 cut(s)	82, 118
MhlI	GDGCHC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	6 cut(s)	9, 96, 127, 130, 160, 164
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	175, 214, 253, 257
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	169
NspV	TTCGAA	1 cut(s)	65
PflFI	GACNNNGTC	1 cut(s)	120
PkrI	GCNGC	4 cut(s)	7, 10, 13, 109
Ple19I	CGATCG	1 cut(s)	178
PspEI	GGTNACC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	120
PvuI	CGATCG	1 cut(s)	178
SatI	GCNGC	4 cut(s)	6, 9, 12, 108
Sau3AI	GATC	4 cut(s)	175, 214, 253, 257
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	7 cut(s)	39, 77, 141, 152, 171, 213, 228
SfuI	TTCGAA	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SsiI	CCGC	4 cut(s)	5, 8, 81, 108
SspMI	CTAG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	4 cut(s)	65, 156, 213, 256
TauI	GCSGC	3 cut(s)	8, 11, 110
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	169
TspGWI	ACGGA	1 cut(s)	178
Tth111I	GACNNNGTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.