Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0013089

Physical Location & Seq

Genomic Coordinates Reverse (-)

32191408 .. 32193158

Gene Structure 1751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1247100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGGCGTCTGCGAGGAACGTACTACTCAAGCACCTGAGAGTGCAGGTTCAAGCCGTGCCTTCTAACCCTAGCTCCACCGCCCCTCTCTTCCTCTCCCCCTTTGCCGCTATCCGACGCCGTCTCTTCTCCGAGGAGGTCAGGGGCACCTTCCTCGACAAATCTGAGGTCACCGATCGGGTCGTCTCCGTCGTCAAGAACTTCCAGAAGGTCGATCCTTCCAAGGTTACACCAAATGCTAATTTCGAAAGTGACCTGGGGTTGGATAGTTTAGATTCTGTGGAGATTGTGATGGCTTTGGAAGAGGAGTTTGGGTTTGAGATCCCTGATAACGAAGCTGACAAGATCAAGTCAATTGGTCTGGCTGTGGACTTTATTTCTTCTCACCCTCAGGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0046872 GO:0046914 GO:0048037 GO:0050897 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

134

Amino Acids

14.61

Weight (kDa)

5.17

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	60 - 125	9.9e-13	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65290
fragaria_vesca	FvH4_6g00220
malus_domestica	MD04G1247100.v1.1 MD12G1263100.v1.1
prunus_persica	Prupe.6G363300_v2.0.a1
pyrus_communis	pycom04g21780 pycom12g24080
rosa_chinensis	RchiOBHm_Chr3g0447591
rosa_laevigata	RLG00000025986
rosa_multiflora	Rmu_sc0026794.1_g000001 Rmu_sc0037294.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425800
rosa_rugosa	Rorug02G0603300
rosa_samantha	Rh3AG003500 Rh3BG003000 Rh3CG003300 Rh3DG003300
rosa_wichuraiana	Rw3G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	3 cut(s)	5, 81, 108
AclWI	GGATC	2 cut(s)	209, 316
AcyI	GRCGYC	2 cut(s)	8, 118
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	255
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AluBI	AGCT	2 cut(s)	75, 338
AluI	AGCT	2 cut(s)	75, 338
Alw26I	GTCTC	2 cut(s)	128, 190
AlwI	GGATC	2 cut(s)	209, 316
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AsuHPI	GGTGA	2 cut(s)	163, 377
AsuII	TTCGAA	1 cut(s)	246
AxyI	CCTNAGG	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	146
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	2 cut(s)	41, 105
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	128, 190
BfaI	CTAG	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	2 cut(s)	6, 108
BlsI	GCNGC	2 cut(s)	7, 109
Bme1390I	CCNGG	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	257
Bpu14I	TTCGAA	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	14
BsaHI	GRCGYC	2 cut(s)	8, 118
BsaJI	CCNNGG	3 cut(s)	132, 222, 256
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse21I	CCTNAGG	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	3 cut(s)	132, 222, 256
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	29, 156
BseRI	GAGGAG	2 cut(s)	149, 320
BseSI	GKGCMC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	128, 190
BsmBI	CGTCTC	2 cut(s)	128, 190
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	175, 214, 321, 345
BspACI	CCGC	3 cut(s)	5, 81, 108
BspCNI	CTCAG	2 cut(s)	30, 157
BspLI	GGNNCC	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	2 cut(s)	209, 316
BspT104I	TTCGAA	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	146
BssECI	CCNNGG	3 cut(s)	132, 222, 256
BssMI	GATC	4 cut(s)	175, 214, 321, 345
BssNI	GRCGYC	2 cut(s)	8, 118
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	257
Bst6I	CTCTTC	3 cut(s)	95, 131, 297
BstACI	GRCGYC	2 cut(s)	8, 118
BstBI	TTCGAA	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	38, 165, 390
BstEII	GGTNACC	1 cut(s)	169
BstKTI	GATC	4 cut(s)	178, 217, 324, 348
BstMAI	GTCTC	2 cut(s)	128, 190
BstMBI	GATC	4 cut(s)	175, 214, 321, 345
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
Bsu36I	CCTNAGG	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	37
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	23
CviJI	RGCY	5 cut(s)	56, 75, 296, 338, 365
CviKI_1	RGCY	5 cut(s)	56, 75, 296, 338, 365
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	3 cut(s)	38, 165, 390
DpnI	GATC	4 cut(s)	177, 216, 323, 347
DpnII	GATC	4 cut(s)	175, 214, 321, 345
Eam1104I	CTCTTC	3 cut(s)	95, 131, 297
EarI	CTCTTC	3 cut(s)	95, 131, 297
Eco130I	CCWWGG	1 cut(s)	222
Eco81I	CCTNAGG	1 cut(s)	390
Eco91I	GGTNACC	1 cut(s)	169
EcoO65I	GGTNACC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	2 cut(s)	128, 190
Fnu4HI	GCNGC	2 cut(s)	6, 108
Fsp4HI	GCNGC	2 cut(s)	6, 108
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	2 cut(s)	6, 108
HgaI	GACGC	1 cut(s)	126
Hin1I	GRCGYC	2 cut(s)	8, 118
HinfI	GANTC	1 cut(s)	275
HphI	GGTGA	2 cut(s)	163, 377
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	3 cut(s)	116, 133, 166
Hpy188III	TCNNGA	2 cut(s)	196, 205
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	2 cut(s)	120, 194
HpyAV	CCTTC	4 cut(s)	72, 160, 202, 228
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	38, 165, 390
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	2 cut(s)	8, 118
Kzo9I	GATC	4 cut(s)	175, 214, 321, 345
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	9 cut(s)	32, 50, 127, 218, 242, 269, 339, 347, 377
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	169, 226, 251
MalI	GATC	4 cut(s)	177, 216, 323, 347
MboI	GATC	4 cut(s)	175, 214, 321, 345
MboII	GAAGA	4 cut(s)	82, 118, 314, 372
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	2 cut(s)	241, 354
MmeI	TCCRAC	2 cut(s)	139, 243
MnlI	CCTC	9 cut(s)	9, 96, 104, 127, 130, 160, 164, 298, 399
MspR9I	CCNGG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	175, 214, 321, 345
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	169, 251
NspV	TTCGAA	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	275
PflFI	GACNNNGTC	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	7, 109
Ple19I	CGATCG	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	255
PspEI	GGTNACC	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	321
PsyI	GACNNNGTC	1 cut(s)	120
PvuI	CGATCG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SatI	GCNGC	2 cut(s)	6, 108
Sau3AI	GATC	4 cut(s)	175, 214, 321, 345
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	149
SfuI	TTCGAA	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	2 cut(s)	241, 354
SsiI	CCGC	3 cut(s)	5, 81, 108
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	3 cut(s)	156, 213, 246
TasI	AATT	2 cut(s)	241, 354
TauI	GCSGC	2 cut(s)	8, 110
TfiI	GAWTC	1 cut(s)	275
TseFI	GTSAC	2 cut(s)	169, 251
Tsp45I	GTSAC	2 cut(s)	169, 251
TspGWI	ACGGA	1 cut(s)	178
Tth111I	GACNNNGTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.