Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0013089

Physical Location & Seq

Genomic Coordinates Forward (+)

282110 .. 284161

Gene Structure 2052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG003300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCGGCGAGAAGCGTAATACTAAAGTACCTGAGAGTGCCGGTGGTTCAGGCTGTGCGGTCAAACCCTAGCTCCTGCGTCACCTCCCCTCTCCTCAACGCCATTCGCGCCCGCTTCTACTCCGAAGAGGTCAGGGGGACCTTCCTCGACAAATCCGAGGTCACCGATCGGATCATCACCGTCGTCAAGAACTTCCAGAAAGTCGATCCCTCCAAGGTTACTCCTGATGCTCACTTCCAGAAGGATCTTGGATTAGATAGTTTAGATGCTGTTGAGATTGTGATGGCACTTGAAGAGGAGTTTGGGTTTGAGATCCCAGACAATGAAGCAGACAAGATCAACTCCATTGGTCTTGCTGTTGACTTTATTTCCTCTCACCCTCAGGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0046872 GO:0046914 GO:0048037 GO:0050897 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

130

Amino Acids

14.41

Weight (kDa)

5.15

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	57 - 122	2.6e-13	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65290
fragaria_vesca	FvH4_6g00220
malus_domestica	MD04G1247100.v1.1 MD12G1263100.v1.1
prunus_persica	Prupe.6G363300_v2.0.a1
pyrus_communis	pycom04g21780 pycom12g24080
rosa_chinensis	RchiOBHm_Chr3g0447591
rosa_laevigata	RLG00000025986
rosa_multiflora	Rmu_sc0026794.1_g000001 Rmu_sc0037294.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425800
rosa_rugosa	Rorug02G0603300
rosa_samantha	Rh3AG003500 Rh3BG003000 Rh3CG003300 Rh3DG003300
rosa_wichuraiana	Rw3G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	3 cut(s)	5, 58, 112
AclWI	GGATC	4 cut(s)	179, 200, 252, 307
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	293
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
AlwI	GGATC	4 cut(s)	179, 200, 252, 307
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	4 cut(s)	73, 154, 169, 368
AvaII	GGWCC	1 cut(s)	138
AxyI	CCTNAGG	1 cut(s)	381
BaeI	ACNNNNGTAYC	2 cut(s)	11, 44
BccI	CCATC	1 cut(s)	277
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	139
BmsI	GCATC	2 cut(s)	217, 256
BsaJI	CCNNGG	2 cut(s)	156, 213
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 290, 320
Bse118I	RCCGGY	1 cut(s)	40
Bse21I	CCTNAGG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	156, 213
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	2 cut(s)	83, 311
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	151
Bsp143I	GATC	6 cut(s)	166, 171, 205, 244, 312, 336
BspACI	CCGC	3 cut(s)	5, 58, 112
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	4 cut(s)	179, 200, 252, 307
BsrFI	RCCGGY	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	156, 213
BssMI	GATC	6 cut(s)	166, 171, 205, 244, 312, 336
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	120, 288
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	32, 381
BstEII	GGTNACC	1 cut(s)	160
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	6 cut(s)	169, 174, 208, 247, 315, 339
BstMBI	GATC	6 cut(s)	166, 171, 205, 244, 312, 336
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstPI	GGTNACC	1 cut(s)	160
BstUI	CGCG	1 cut(s)	108
BstX2I	RGATCY	2 cut(s)	244, 312
BstYI	RGATCY	2 cut(s)	244, 312
Bsu36I	CCTNAGG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	138
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	28
CviJI	RGCY	2 cut(s)	53, 72
CviKI_1	RGCY	2 cut(s)	53, 72
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	32, 381
DpnI	GATC	6 cut(s)	168, 173, 207, 246, 314, 338
DpnII	GATC	6 cut(s)	166, 171, 205, 244, 312, 336
Eam1104I	CTCTTC	2 cut(s)	120, 288
EarI	CTCTTC	2 cut(s)	120, 288
Eco130I	CCWWGG	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	381
Eco91I	GGTNACC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	138
EcoO65I	GGTNACC	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaqI	GGGAC	1 cut(s)	151
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	6
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	110
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	4 cut(s)	73, 154, 169, 368
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	3 cut(s)	124, 157, 171
Hpy188III	TCNNGA	4 cut(s)	187, 196, 224, 238
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	151, 235
HpyCH4III	ACNGT	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	2 cut(s)	32, 381
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	6 cut(s)	166, 171, 205, 244, 312, 336
LmnI	GCTCC	1 cut(s)	77
LweI	GCATC	2 cut(s)	217, 256
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	3 cut(s)	79, 160, 217
MalI	GATC	6 cut(s)	168, 173, 207, 246, 314, 338
MboI	GATC	6 cut(s)	166, 171, 205, 244, 312, 336
MboII	GAAGA	2 cut(s)	137, 305
MflI	RGATCY	2 cut(s)	244, 312
MspI	CCGG	1 cut(s)	41
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	6 cut(s)	166, 171, 205, 244, 312, 336
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	79, 160
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	7
Ple19I	CGATCG	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	138
PspEI	GGTNACC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	138
PspPPI	RGGWCCY	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	244, 312
PvuI	CGATCG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	6 cut(s)	166, 171, 205, 244, 312, 336
Sau96I	GGNCC	1 cut(s)	138
SetI	ASST	7 cut(s)	33, 74, 86, 132, 143, 162, 219
SfaNI	GCATC	2 cut(s)	217, 256
SinI	GGWCC	1 cut(s)	138
SsiI	CCGC	3 cut(s)	5, 58, 112
SspMI	CTAG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	147, 204
TauI	GCSGC	1 cut(s)	8
TseFI	GTSAC	2 cut(s)	79, 160
Tsp45I	GTSAC	2 cut(s)	79, 160
TspDTI	ATGAA	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	245
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.