Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013089

Physical Location & Seq

Genomic Coordinates Forward (+)

165431 .. 167358

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCGGCGGCGAGAAGCGTAATGCTAAAGTACCTCAGAGTGCCGGTGGTTCAGGGCGTGCAGCCGAACCCTAGCGTCGCGACCACTCTGTTCAACGCCGTACGCGCCCGCTTCTACTCGGAAGATGTGAGGGGGACTTTCCTTGACAAATCCGAGGTCACCGATCGCATTATCACCGTTGTCAAGAACTTCCAGAAAGTCGATCCCTCCAAGGTTACACCGGATGCTCATTTCCAGAAAGATCTTGGTTTAGATAGTTTAGATGCTGTGGAGATTGTGATGGCACTTGAAGAGGAGTTTGGGTTTGAGATCCCAGACAATGAAGCAGACAAGATCAACTCCATTGGTCTTGCTGTTGACTTTATATCCTCTCACCCTCAGGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0046872 GO:0046914 GO:0048037 GO:0050897 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

130

Amino Acids

14.27

Weight (kDa)

4.95

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	56 - 121	2.5e-13	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65290
fragaria_vesca	FvH4_6g00220
malus_domestica	MD04G1247100.v1.1 MD12G1263100.v1.1
prunus_persica	Prupe.6G363300_v2.0.a1
pyrus_communis	pycom04g21780 pycom12g24080
rosa_chinensis	RchiOBHm_Chr3g0447591
rosa_laevigata	RLG00000025986
rosa_multiflora	Rmu_sc0026794.1_g000001 Rmu_sc0037294.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425800
rosa_rugosa	Rorug02G0603300
rosa_samantha	Rh3AG003500 Rh3BG003000 Rh3CG003300 Rh3DG003300
rosa_wichuraiana	Rw3G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	80, 105
AciI	CCGC	3 cut(s)	5, 8, 109
AclWI	GGATC	2 cut(s)	197, 304
AfaI	GTAC	2 cut(s)	32, 102
AgsI	TTSAA	2 cut(s)	94, 290
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AlwI	GGATC	2 cut(s)	197, 304
ApeKI	GCWGC	1 cut(s)	61
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspLEI	GCGC	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	151, 166, 365
AxyI	CCTNAGG	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	72
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	3 cut(s)	6, 9, 62
BlsI	GCNGC	3 cut(s)	7, 10, 63
BmsI	GCATC	2 cut(s)	214, 253
BsaJI	CCNNGG	2 cut(s)	153, 210
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bse118I	RCCGGY	1 cut(s)	43
Bse21I	CCTNAGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	153, 210
BseGI	GGATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	2 cut(s)	80, 105
Bsh1285I	CGRYCG	1 cut(s)	166
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	44, 221
BsiWI	CGTACG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	148
Bsp143I	GATC	5 cut(s)	163, 202, 241, 309, 333
Bsp68I	TCGCGA	1 cut(s)	80
BspACI	CCGC	3 cut(s)	5, 8, 109
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	2 cut(s)	80, 105
BspPI	GGATC	2 cut(s)	197, 304
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	153, 210
BssMI	GATC	5 cut(s)	163, 202, 241, 309, 333
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	59, 109
BstDEI	CTNAG	2 cut(s)	35, 378
BstEII	GGTNACC	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	2 cut(s)	80, 105
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	5 cut(s)	166, 205, 244, 312, 336
BstMBI	GATC	5 cut(s)	163, 202, 241, 309, 333
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstPI	GGTNACC	1 cut(s)	157
BstUI	CGCG	2 cut(s)	80, 105
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	2 cut(s)	241, 309
BstYI	RGATCY	2 cut(s)	241, 309
Bsu36I	CCTNAGG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	229
BtuMI	TCGCGA	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	59, 109
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	43
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	31, 101
CviJI	RGCY	1 cut(s)	64
CviKI_1	RGCY	1 cut(s)	64
CviQI	GTAC	2 cut(s)	31, 101
DdeI	CTNAG	2 cut(s)	35, 378
DpnI	GATC	5 cut(s)	165, 204, 243, 311, 335
DpnII	GATC	5 cut(s)	163, 202, 241, 309, 333
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	378
Eco91I	GGTNACC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaiI	YATR	1 cut(s)	365
FaqI	GGGAC	1 cut(s)	148
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	3 cut(s)	6, 9, 62
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	6, 9, 62
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	3 cut(s)	6, 9, 62
HapII	CCGG	2 cut(s)	44, 221
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HpaII	CCGG	2 cut(s)	44, 221
HphI	GGTGA	3 cut(s)	151, 166, 365
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	38, 121, 154
Hpy188III	TCNNGA	4 cut(s)	79, 184, 193, 235
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	35, 378
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	5 cut(s)	163, 202, 241, 309, 333
LpnPI	CCDG	7 cut(s)	38, 57, 206, 234, 248, 327, 365
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	214, 253
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	157, 214
MalI	GATC	5 cut(s)	165, 204, 243, 311, 335
MboI	GATC	5 cut(s)	163, 202, 241, 309, 333
MboII	GAAGA	2 cut(s)	134, 302
MflI	RGATCY	2 cut(s)	241, 309
MnlI	CCTC	7 cut(s)	44, 123, 148, 217, 286, 379, 387
MspI	CCGG	2 cut(s)	44, 221
MvnI	CGCG	2 cut(s)	80, 105
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	5 cut(s)	163, 202, 241, 309, 333
NmuCI	GTSAC	1 cut(s)	157
NruI	TCGCGA	1 cut(s)	80
Pfl23II	CGTACG	1 cut(s)	100
PkrI	GCNGC	3 cut(s)	7, 10, 63
Ple19I	CGATCG	1 cut(s)	166
PspEI	GGTNACC	1 cut(s)	157
PspLI	CGTACG	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	241, 309
PvuI	CGATCG	1 cut(s)	166
RruI	TCGCGA	1 cut(s)	80
RsaI	GTAC	2 cut(s)	32, 102
RsaNI	GTAC	2 cut(s)	31, 101
SatI	GCNGC	3 cut(s)	6, 9, 62
Sau3AI	GATC	5 cut(s)	163, 202, 241, 309, 333
SetI	ASST	3 cut(s)	36, 159, 216
SfaNI	GCATC	2 cut(s)	214, 253
SsiI	CCGC	3 cut(s)	5, 8, 109
SspMI	CTAG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	201
TauI	GCSGC	2 cut(s)	8, 11
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.