Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026794.1

Orthogroup ID

OG0013089

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 486

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026794.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

atgctaaagtacctgagagtgccggtggttcaggctgtgcggccaaaccctagctccagctcctccgtcacctcccctctcctcaacgccattcgcgcccgcttctactccgaagaggtcagggggaccttcctcgacaaatccgaggtcaccgatcggattatcaccgtcgtcaagaacttccagaaagtcgatccctccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0046872 GO:0046914 GO:0048037 GO:0050897 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

68

Amino Acids

7.67

Weight (kDa)

10.11

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65290
fragaria_vesca	FvH4_6g00220
malus_domestica	MD04G1247100.v1.1 MD12G1263100.v1.1
prunus_persica	Prupe.6G363300_v2.0.a1
pyrus_communis	pycom04g21780 pycom12g24080
rosa_chinensis	RchiOBHm_Chr3g0447591
rosa_laevigata	RLG00000025986
rosa_multiflora	Rmu_sc0026794.1_g000001 Rmu_sc0037294.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425800
rosa_rugosa	Rorug02G0603300
rosa_samantha	Rh3AG003500 Rh3BG003000 Rh3CG003300 Rh3DG003300
rosa_wichuraiana	Rw3G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AciI	CCGC	2 cut(s)	40, 100
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	41
AfaI	GTAC	1 cut(s)	11
AluBI	AGCT	2 cut(s)	54, 60
AluI	AGCT	2 cut(s)	54, 60
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	41
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	3 cut(s)	61, 142, 157
AvaII	GGWCC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse118I	RCCGGY	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	5
BseRI	GAGGAG	2 cut(s)	52, 71
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	154, 193
BspACI	CCGC	2 cut(s)	40, 100
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	154, 193
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	14
BstEII	GGTNACC	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	157, 196
BstMBI	GATC	2 cut(s)	154, 193
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstPI	GGTNACC	1 cut(s)	148
BstUI	CGCG	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	4 cut(s)	35, 43, 54, 60
CviKI_1	RGCY	4 cut(s)	35, 43, 54, 60
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	2 cut(s)	156, 195
DpnII	GATC	2 cut(s)	154, 193
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	126
Eco91I	GGTNACC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	126
EcoO65I	GGTNACC	1 cut(s)	148
FaqI	GGGAC	1 cut(s)	139
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	1 cut(s)	98
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	3 cut(s)	61, 142, 157
Hpy188I	TCNGA	3 cut(s)	112, 145, 159
Hpy188III	TCNNGA	2 cut(s)	175, 184
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	14
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	154, 193
LmnI	GCTCC	2 cut(s)	59, 65
LpnPI	CCDG	6 cut(s)	17, 26, 36, 70, 106, 197
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	67, 148
MalI	GATC	2 cut(s)	156, 195
MboI	GATC	2 cut(s)	154, 193
MboII	GAAGA	1 cut(s)	125
MnlI	CCTC	7 cut(s)	73, 82, 87, 92, 109, 139, 143
MspI	CCGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	2 cut(s)	154, 193
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	2 cut(s)	67, 148
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	42
Ple19I	CGATCG	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	126
PspEI	GGTNACC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	126
PspPPI	RGGWCCY	1 cut(s)	126
PvuI	CGATCG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	154, 193
Sau96I	GGNCC	1 cut(s)	126
SetI	ASST	7 cut(s)	15, 56, 62, 74, 120, 131, 150
SinI	GGWCC	1 cut(s)	126
SsiI	CCGC	2 cut(s)	40, 100
SspMI	CTAG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	2 cut(s)	135, 192
TauI	GCSGC	1 cut(s)	43
TseFI	GTSAC	2 cut(s)	67, 148
Tsp45I	GTSAC	2 cut(s)	67, 148
TspGWI	ACGGA	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	126
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.