Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0013089

Physical Location & Seq

Genomic Coordinates Forward (+)

284708 .. 286879

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGGCGAGAAGCGTAATGCTAAAGTACCTGAGAGTGCCGGTGGTTCAGGCTGTGCGGCCAAACCCTAGCTCCAGCTCCTCCGTCACCTCCCCTCTCCTCAACGCCATTCGCGCCCGCTTCTACTCCGAAGAGGTCAGGGGGACCTTCCTCGACAAATCCGAGGTCACCGATCGGATCATCACCGTCGTCAAGAACTTCCAGAAAGTCGATCCCTCCAAGGTTACTCCGGATGCTCACTTCCAGAAGGATCTTGGATTAGATAGTTTAGATGCTGTTGAGATTGTGATGGCACTTGAAGAGGAGTTTGGGTTTGAGATCCCAGACAATGAAGCAGACAAGATCAACTCCATTGGTCTTGCTGTTGACTTTATTTCCTCTCACCCTCAGGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0046872 GO:0046914 GO:0048037 GO:0050897 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

132

Amino Acids

14.59

Weight (kDa)

5.15

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	59 - 124	2.7e-13	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65290
fragaria_vesca	FvH4_6g00220
malus_domestica	MD04G1247100.v1.1 MD12G1263100.v1.1
prunus_persica	Prupe.6G363300_v2.0.a1
pyrus_communis	pycom04g21780 pycom12g24080
rosa_chinensis	RchiOBHm_Chr3g0447591
rosa_laevigata	RLG00000025986
rosa_multiflora	Rmu_sc0026794.1_g000001 Rmu_sc0037294.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425800
rosa_rugosa	Rorug02G0603300
rosa_samantha	Rh3AG003500 Rh3BG003000 Rh3CG003300 Rh3DG003300
rosa_wichuraiana	Rw3G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	3 cut(s)	5, 58, 118
AclWI	GGATC	4 cut(s)	185, 206, 258, 313
AcoI	YGGCCR	1 cut(s)	59
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	299
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	2 cut(s)	72, 78
AluI	AGCT	2 cut(s)	72, 78
AlwI	GGATC	4 cut(s)	185, 206, 258, 313
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	1 cut(s)	59
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	4 cut(s)	79, 160, 175, 374
AvaII	GGWCC	1 cut(s)	144
AxyI	CCTNAGG	1 cut(s)	387
BccI	CCATC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	2 cut(s)	6, 59
BlsI	GCNGC	2 cut(s)	7, 60
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	145
BmsI	GCATC	2 cut(s)	223, 262
BpmI	CTGGAG	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	162, 219
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 296, 326
Bse118I	RCCGGY	1 cut(s)	40
Bse21I	CCTNAGG	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	162, 219
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	3 cut(s)	70, 89, 317
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	61
BsiEI	CGRYCG	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	41, 230
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	61
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	6 cut(s)	172, 177, 211, 250, 318, 342
BspACI	CCGC	3 cut(s)	5, 58, 118
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	24
BspEI	TCCGGA	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	4 cut(s)	185, 206, 258, 313
BsrFI	RCCGGY	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	162, 219
BssMI	GATC	6 cut(s)	172, 177, 211, 250, 318, 342
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	2 cut(s)	126, 294
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	32, 387
BstEII	GGTNACC	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	6 cut(s)	175, 180, 214, 253, 321, 345
BstMBI	GATC	6 cut(s)	172, 177, 211, 250, 318, 342
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstPI	GGTNACC	1 cut(s)	166
BstUI	CGCG	1 cut(s)	114
BstX2I	RGATCY	2 cut(s)	250, 318
BstYI	RGATCY	2 cut(s)	250, 318
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	28
CviJI	RGCY	4 cut(s)	53, 61, 72, 78
CviKI_1	RGCY	4 cut(s)	53, 61, 72, 78
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	32, 387
DpnI	GATC	6 cut(s)	174, 179, 213, 252, 320, 344
DpnII	GATC	6 cut(s)	172, 177, 211, 250, 318, 342
EaeI	YGGCCR	1 cut(s)	59
Eam1104I	CTCTTC	2 cut(s)	126, 294
EarI	CTCTTC	2 cut(s)	126, 294
Eco130I	CCWWGG	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	387
Eco91I	GGTNACC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	144
EcoO65I	GGTNACC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaqI	GGGAC	1 cut(s)	157
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	2 cut(s)	6, 59
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	6, 59
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	2 cut(s)	6, 59
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	2 cut(s)	41, 230
HhaI	GCGC	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HpaII	CCGG	2 cut(s)	41, 230
HphI	GGTGA	4 cut(s)	79, 160, 175, 374
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	3 cut(s)	130, 163, 177
Hpy188III	TCNNGA	4 cut(s)	193, 202, 230, 244
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	157, 241
HpyCH4III	ACNGT	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	32, 387
HspAI	GCGC	1 cut(s)	114
Kpn2I	TCCGGA	1 cut(s)	229
Kzo9I	GATC	6 cut(s)	172, 177, 211, 250, 318, 342
LmnI	GCTCC	2 cut(s)	77, 83
LweI	GCATC	2 cut(s)	223, 262
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	3 cut(s)	85, 166, 223
MalI	GATC	6 cut(s)	174, 179, 213, 252, 320, 344
MboI	GATC	6 cut(s)	172, 177, 211, 250, 318, 342
MboII	GAAGA	2 cut(s)	143, 311
MflI	RGATCY	2 cut(s)	250, 318
MroI	TCCGGA	1 cut(s)	229
MspI	CCGG	2 cut(s)	41, 230
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	6 cut(s)	172, 177, 211, 250, 318, 342
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	2 cut(s)	85, 166
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	7, 60
Ple19I	CGATCG	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	144
PspEI	GGTNACC	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	144
PspPPI	RGGWCCY	1 cut(s)	144
PsuI	RGATCY	2 cut(s)	250, 318
PvuI	CGATCG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SatI	GCNGC	2 cut(s)	6, 59
Sau3AI	GATC	6 cut(s)	172, 177, 211, 250, 318, 342
Sau96I	GGNCC	1 cut(s)	144
SetI	ASST	8 cut(s)	33, 74, 80, 92, 138, 149, 168, 225
SfaNI	GCATC	2 cut(s)	223, 262
SinI	GGWCC	1 cut(s)	144
SsiI	CCGC	3 cut(s)	5, 58, 118
SspMI	CTAG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	153, 210
TauI	GCSGC	2 cut(s)	8, 61
TseFI	GTSAC	2 cut(s)	85, 166
Tsp45I	GTSAC	2 cut(s)	85, 166
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.