Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013089

Physical Location & Seq

Genomic Coordinates Reverse (-)

30540710 .. 30543121

Gene Structure 2412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G363300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGGCTGCTGCGAGGAGCGCGATACTTAAGTACCTCAGAGTTCCAGTTCCGGCCGTGCCATCAAACCCTAGCTCCACCACCCCTCTATTTCTATCCCCCTTTAACGCCATACGACGCCGTCTCTTCTCCGAGGAGGTGAGGGGCACCTTCCTCGACAAATCCGAGGTCACCGATCGTGTTATCTCTGTCGTCAAGAACTTCCAGAAAGTCGATCCCTCCAAGGTTACACCAAATGCTCATTTCCAGAATGATCTTGGATTAGATAGTTTAGATGCTGTGGAGATTGTGATGGCTCTTGAAGAGGAGTTTGGGTTTGAGATCCCTGATAATGAAGCTGACAAGATCAACTCAATCGGTCTTGCTGTGGACTTTATTTCTTCTCACCCTCAGGCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0046872 GO:0046914 GO:0048037 GO:0050897 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

134

Amino Acids

14.61

Weight (kDa)

5.13

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65290
fragaria_vesca	FvH4_6g00220
malus_domestica	MD04G1247100.v1.1 MD12G1263100.v1.1
prunus_persica	Prupe.6G363300_v2.0.a1
pyrus_communis	pycom04g21780 pycom12g24080
rosa_chinensis	RchiOBHm_Chr3g0447591
rosa_laevigata	RLG00000025986
rosa_multiflora	Rmu_sc0026794.1_g000001 Rmu_sc0037294.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425800
rosa_rugosa	Rorug02G0603300
rosa_samantha	Rh3AG003500 Rh3BG003000 Rh3CG003300 Rh3DG003300
rosa_wichuraiana	Rw3G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	209, 316
AcoI	YGGCCR	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	1 cut(s)	35
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AluBI	AGCT	2 cut(s)	75, 338
AluI	AGCT	2 cut(s)	75, 338
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	209, 316
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	8, 11
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	3 cut(s)	151, 163, 377
AxyI	CCTNAGG	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	149
BaeI	ACNNNNGTAYC	4 cut(s)	17, 17, 50, 50
BanI	GGYRCC	1 cut(s)	146
BccI	CCATC	2 cut(s)	70, 286
BceAI	ACGGC	2 cut(s)	41, 105
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	29
BisI	GCNGC	3 cut(s)	6, 9, 12
BlsI	GCNGC	3 cut(s)	7, 10, 13
BmiI	GGNNCC	1 cut(s)	148
BmsI	GCATC	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	132, 165, 222
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 299, 329
Bse1I	ACTGG	1 cut(s)	47
Bse21I	CCTNAGG	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	132, 165, 222
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	3 cut(s)	31, 149, 320
BseSI	GKGCMC	1 cut(s)	149
BseX3I	CGGCCG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	2 cut(s)	57, 178
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	146
BsiEI	CGRYCG	2 cut(s)	57, 178
BsiSI	CCGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	128
BsmBI	CGTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	5 cut(s)	175, 214, 253, 321, 345
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	2 cut(s)	209, 316
BspT107I	GGYRCC	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	132, 165, 222
BssMI	GATC	5 cut(s)	175, 214, 253, 321, 345
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	222
Bst6I	CTCTTC	2 cut(s)	131, 297
BstACI	GRCGYC	1 cut(s)	118
BstAFI	CTTAAG	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	38, 390
BstEII	GGTNACC	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	5 cut(s)	178, 217, 256, 324, 348
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	5 cut(s)	175, 214, 253, 321, 345
BstMCI	CGRYCG	2 cut(s)	57, 178
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 20
BstPI	GGTNACC	1 cut(s)	169
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BstZI	CGGCCG	1 cut(s)	54
Bsu36I	CCTNAGG	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	56
CfoI	GCGC	1 cut(s)	23
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	34
CviJI	RGCY	5 cut(s)	8, 56, 75, 296, 338
CviKI_1	RGCY	5 cut(s)	8, 56, 75, 296, 338
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	38, 390
DpnI	GATC	5 cut(s)	177, 216, 255, 323, 347
DpnII	GATC	5 cut(s)	175, 214, 253, 321, 345
EaeI	YGGCCR	1 cut(s)	54
EagI	CGGCCG	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	131, 297
EarI	CTCTTC	2 cut(s)	131, 297
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	222
Eco52I	CGGCCG	1 cut(s)	54
Eco81I	CCTNAGG	1 cut(s)	390
Eco91I	GGTNACC	1 cut(s)	169
EcoO65I	GGTNACC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	128
FaiI	YATR	1 cut(s)	113
Fnu4HI	GCNGC	3 cut(s)	6, 9, 12
Fsp4HI	GCNGC	3 cut(s)	6, 9, 12
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	3 cut(s)	6, 9, 12
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	3 cut(s)	151, 163, 377
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	3 cut(s)	41, 133, 166
Hpy188III	TCNNGA	4 cut(s)	196, 205, 247, 299
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 20
HpyF3I	CTNAG	2 cut(s)	38, 390
Hsp92I	GRCGYC	1 cut(s)	118
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	5 cut(s)	175, 214, 253, 321, 345
LmnI	GCTCC	2 cut(s)	18, 80
LpnPI	CCDG	6 cut(s)	60, 66, 218, 260, 339, 377
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	169, 226
MalI	GATC	5 cut(s)	177, 216, 255, 323, 347
MboI	GATC	5 cut(s)	175, 214, 253, 321, 345
MboII	GAAGA	3 cut(s)	118, 314, 372
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	149
MseI	TTAA	2 cut(s)	30, 105
MspCI	CTTAAG	1 cut(s)	29
MspI	CCGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	11, 20
NdeII	GATC	5 cut(s)	175, 214, 253, 321, 345
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PflFI	GACNNNGTC	1 cut(s)	120
PkrI	GCNGC	3 cut(s)	7, 10, 13
Ple19I	CGATCG	1 cut(s)	178
PspEI	GGTNACC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	321
PsyI	GACNNNGTC	1 cut(s)	120
PvuI	CGATCG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	30, 105
SatI	GCNGC	3 cut(s)	6, 9, 12
Sau3AI	GATC	5 cut(s)	175, 214, 253, 321, 345
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	7 cut(s)	39, 77, 141, 152, 171, 228, 340
SfaNI	GCATC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	222
TaqI	TCGA	2 cut(s)	156, 213
TaqII	GACCGA	1 cut(s)	347
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	30, 105
Tru9I	TTAA	2 cut(s)	30, 105
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	8, 11
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	348
Tth111I	GACNNNGTC	1 cut(s)	120
Vha464I	CTTAAG	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.