Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013089

Physical Location & Seq

Genomic Coordinates Forward (+)

46788254 .. 46790261

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCGGCGAGAAGCGTAATGCTAAAGTACCTGAGAGTGCCAGTGGTTCAGGCTGTGCGGCCAAACCCTAGCTCCTCCTCCGTCACCTCCCCGCTCCTCAACGCCATACGCGCCCGCTTCTACTCCGAAGAGGTCAGGGGGACCTTCCTCGACAAATCCGAGGTCACCGATCGGATTATCACCGTCGTCAAGAACTTCCAGAAAGTCGATCCCTCCAAGGTTACTCCGGATGCTCACTTCCAGAAGGATCTTGGATTAGATAGTTTAGATGCTGTTGAGATTGTGATGGCACTTGAAGAGGAGTTTGGGTTTGAGATCCCAGACAATGAAGCAGACAAGATCAACTCCATTGGTCTTGCTGTTGACTTTATTTCCTCTCACCCTCAGGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0046872 GO:0046914 GO:0048037 GO:0050897 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

131

Amino Acids

14.51

Weight (kDa)

5.15

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	58 - 123	2.6e-13	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65290
fragaria_vesca	FvH4_6g00220
malus_domestica	MD04G1247100.v1.1 MD12G1263100.v1.1
prunus_persica	Prupe.6G363300_v2.0.a1
pyrus_communis	pycom04g21780 pycom12g24080
rosa_chinensis	RchiOBHm_Chr3g0447591
rosa_laevigata	RLG00000025986
rosa_multiflora	Rmu_sc0026794.1_g000001 Rmu_sc0037294.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425800
rosa_rugosa	Rorug02G0603300
rosa_samantha	Rh3AG003500 Rh3BG003000 Rh3CG003300 Rh3DG003300
rosa_wichuraiana	Rw3G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	94
AccII	CGCG	1 cut(s)	111
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	4 cut(s)	5, 58, 92, 115
AclWI	GGATC	3 cut(s)	203, 255, 310
AcoI	YGGCCR	1 cut(s)	59
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	296
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
AlwI	GGATC	3 cut(s)	203, 255, 310
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	1 cut(s)	59
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	4 cut(s)	76, 157, 172, 371
AvaII	GGWCC	1 cut(s)	141
AxyI	CCTNAGG	1 cut(s)	384
BccI	CCATC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	2 cut(s)	6, 59
BlsI	GCNGC	2 cut(s)	7, 60
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	142
BmsI	GCATC	2 cut(s)	220, 259
BsaJI	CCNNGG	2 cut(s)	159, 216
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 293, 323
Bse1I	ACTGG	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	159, 216
BseGI	GGATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	4 cut(s)	64, 67, 86, 314
Bsh1236I	CGCG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	61
BsiEI	CGRYCG	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	61
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	5 cut(s)	169, 208, 247, 315, 339
BspACI	CCGC	4 cut(s)	5, 58, 92, 115
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	24
BspEI	TCCGGA	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	3 cut(s)	203, 255, 310
BsrBI	CCGCTC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	159, 216
BssMI	GATC	5 cut(s)	169, 208, 247, 315, 339
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	123, 291
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	32, 384
BstEII	GGTNACC	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	5 cut(s)	172, 211, 250, 318, 342
BstMBI	GATC	5 cut(s)	169, 208, 247, 315, 339
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	163
BstUI	CGCG	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	247, 315
BstYI	RGATCY	2 cut(s)	247, 315
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	28
CviJI	RGCY	3 cut(s)	53, 61, 72
CviKI_1	RGCY	3 cut(s)	53, 61, 72
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	32, 384
DpnI	GATC	5 cut(s)	171, 210, 249, 317, 341
DpnII	GATC	5 cut(s)	169, 208, 247, 315, 339
EaeI	YGGCCR	1 cut(s)	59
Eam1104I	CTCTTC	2 cut(s)	123, 291
EarI	CTCTTC	2 cut(s)	123, 291
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	141
Eco81I	CCTNAGG	1 cut(s)	384
Eco91I	GGTNACC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	141
EcoO65I	GGTNACC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	154
FauI	CCCGC	2 cut(s)	99, 122
Fnu4HI	GCNGC	2 cut(s)	6, 59
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	6, 59
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	2 cut(s)	6, 59
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	4 cut(s)	76, 157, 172, 371
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	127, 160, 174
Hpy188III	TCNNGA	4 cut(s)	190, 199, 227, 241
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	154, 238
HpyCH4III	ACNGT	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	32, 384
HspAI	GCGC	1 cut(s)	111
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	5 cut(s)	169, 208, 247, 315, 339
LmnI	GCTCC	2 cut(s)	77, 99
LpnPI	CCDG	9 cut(s)	35, 44, 54, 121, 212, 240, 254, 333, 371
LweI	GCATC	2 cut(s)	220, 259
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	3 cut(s)	82, 163, 220
MalI	GATC	5 cut(s)	171, 210, 249, 317, 341
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	5 cut(s)	169, 208, 247, 315, 339
MboII	GAAGA	2 cut(s)	140, 308
MflI	RGATCY	2 cut(s)	247, 315
MroI	TCCGGA	1 cut(s)	226
MspI	CCGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	5 cut(s)	169, 208, 247, 315, 339
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	82, 163
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PkrI	GCNGC	2 cut(s)	7, 60
Ple19I	CGATCG	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	141
PspPPI	RGGWCCY	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	247, 315
PvuI	CGATCG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SatI	GCNGC	2 cut(s)	6, 59
Sau3AI	GATC	5 cut(s)	169, 208, 247, 315, 339
Sau96I	GGNCC	1 cut(s)	141
SetI	ASST	7 cut(s)	33, 74, 89, 135, 146, 165, 222
SfaNI	GCATC	2 cut(s)	220, 259
SinI	GGWCC	1 cut(s)	141
SsiI	CCGC	4 cut(s)	5, 58, 92, 115
SspMI	CTAG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	150, 207
TauI	GCSGC	2 cut(s)	8, 61
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	2 cut(s)	82, 163
Tsp45I	GTSAC	2 cut(s)	82, 163
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.