AT1G65410

ABC transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014402
Physical Location & Seq
Forward (+)
24295169 .. 24297595
2427 bp
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UTR
Exon/CDS
Intron
AT1G65410.1

Sequence Viewer

Length: 1038 bp
ATGCTTTCGTTATCATGCTCTTCTTCTTCTTCTTCGTTGCTTCCTCCGAGTTTACACTACCACGGTTCTTCTTCTGTTCAGTCCATCGTTGTACCAAGAAGGAGTCTTATCTCGTTTCGTCGGAAAGTCTCTTGCTGTTGCATAGCTCCACCTCAGAACTTGGACAACGATGCCACCAAATTCGATAGTCTTACCAAGTCTGGAGGAGGTATGTGTAAAGAGCGAGGGCTTGAGAATGATTCTGATGTTCTTATTGAATGTAGAGATGTCTATAAATCGTTTGGGGAGAAACATATCTTGAAAGGTGTTAGCTTTAAGATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTGGAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGGGAGAAGTTTATATACGAGGAAAAAAACGAGCTGGTTTGATAAGTGATGAGGAAATATCAGGACTTCGTATTGGCCTGGTATTTCAGAGTGCAGCTCTCTTTGATTCACTATCAGTTCGTGAAAATGTTGGTTTTCTACTTTATGAAAGATCAAAAATGTCCGAGAATCAAATATCTGAGCTTGTGACACAAACCTTGGCAGCTGTTGGTTTGAAGGGGGTTGAGAATCGATTACCTTCTGAGCTATCTGGTGGAATGAAGAAAAGGGTTGCTTTAGCTCGTTCACTAATTTTTGATACAACAAAAGAGGTCATAGAGCCAGAGGTGCTTTTGTACGATGAGCCAACTGCTGGACTTGATCCAATTGCATCAACTGTAGTTGAAGATCTTATACGGTCTGTTCACATGACAGACGAAGATGCAGTTGGAAAACCTGGAAAAATTGCGTCTTATCTTGTTGTTACCCATCAACATAGCACCATTCAAAGAGCTGTAGACAGGTTATTGTTTCTGTATGAAGGAAAGATCGTTTGGCAAGGAATGACACATGAATTCACAACCTCAACTAATCCAATAGTTCAACAGTTTGCTACAGGCAGCCTCGATGGACCAATCAGATACTAG

Protein Analysis

345

Amino Acids

37.52

Weight (kDa)

7.64

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 100 - 255 3.9e-30 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65410
fragaria_vesca FvH4_6g00670 FvH4_6g00670
malus_domestica MD04G1243700.v1.1 MD12G1259300.v1.1
prunus_persica Prupe.6G359900_v2.0.a1
pyrus_communis pycom04g21440 pycom12g23770
rosa_chinensis RchiOBHm_Chr3g0448111
rosa_laevigata RLG00000025946
rosa_multiflora Rmu_sc0005969.1_g000027
rosa_roxburghii Rroxscaffold_6G00426240
rosa_rugosa Rorug02G0608200
rosa_samantha Rh3AG007700 Rh3CG007400 Rh3DG007900
rosa_wichuraiana Rw3G000620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 764
AccI GTMKAC 1 cut(s) 909
AclWI GGATC 1 cut(s) 767
AcsI RAATTY 2 cut(s) 179, 965
AfaI GTAC 2 cut(s) 93, 749
AfiI CCNNNNNNNGG 2 cut(s) 413, 764
AgsI TTSAA 6 cut(s) 257, 301, 628, 797, 899, 995
AjnI CCWGG 2 cut(s) 489, 847
AjuI GAANNNNNNNTTGG 4 cut(s) 822, 854, 928, 960
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 767
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 3 cut(s) 506, 614, 1011
ApoI RAATTY 2 cut(s) 179, 965
AspS9I GGNCC 2 cut(s) 350, 1022
AsuHPI GGTGA 2 cut(s) 341, 355
AvaII GGWCC 2 cut(s) 350, 1022
BarI GAAGNNNNNNTAC 4 cut(s) 411, 443, 789, 821
BbsI GAAGAC 1 cut(s) 389
BbvI GCAGC 3 cut(s) 518, 626, 1023
BccI CCATC 3 cut(s) 92, 888, 1013
BciT130I CCWGG 2 cut(s) 491, 849
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 1036
BfmI CTRYAG 3 cut(s) 789, 906, 1005
BglII AGATCT 1 cut(s) 799
BisI GCNGC 3 cut(s) 507, 615, 1012
BlsI GCNGC 3 cut(s) 508, 616, 1013
Bme1390I CCNGG 2 cut(s) 491, 849
Bme18I GGWCC 2 cut(s) 350, 1022
BmgT120I GGNCC 2 cut(s) 350, 1022
BmrFI CCNGG 2 cut(s) 491, 849
BmsI GCATC 3 cut(s) 160, 791, 823
BpiI GAAGAC 1 cut(s) 389
BplI GAGNNNNNCTC 2 cut(s) 493, 525
BpmI CTGGAG 2 cut(s) 222, 390
BpuEI CTTGAG 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 643
BsaJI CCNNGG 2 cut(s) 61, 609
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 764
Bse1I ACTGG 1 cut(s) 367
BseBI CCWGG 2 cut(s) 491, 849
BseCI ATCGAT 1 cut(s) 643
BseDI CCNNGG 2 cut(s) 61, 609
BseLI CCNNNNNNNGG 2 cut(s) 413, 764
BseMII CTCAG 3 cut(s) 167, 582, 645
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 219
BseXI GCAGC 3 cut(s) 518, 626, 1023
BsgI GTGCAG 1 cut(s) 525
BshFI GGCC 1 cut(s) 489
BshVI ATCGAT 1 cut(s) 643
BslI CCNNNNNNNGG 2 cut(s) 413, 764
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 489
Bsp143I GATC 4 cut(s) 563, 772, 799, 939
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 3 cut(s) 166, 583, 646
BspDI ATCGAT 1 cut(s) 643
BspPI GGATC 1 cut(s) 767
BspQI GCTCTTC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 61, 609
BssMI GATC 4 cut(s) 563, 772, 799, 939
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 2 cut(s) 491, 849
Bst4CI ACNGT 4 cut(s) 65, 790, 810, 999
Bst6I CTCTTC 1 cut(s) 25
BstDEI CTNAG 3 cut(s) 153, 591, 654
BstDSI CCRYGG 1 cut(s) 61
BstKTI GATC 4 cut(s) 566, 775, 802, 942
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 4 cut(s) 563, 772, 799, 939
BstMWI GCNNNNNNNGC 1 cut(s) 739
BstNI CCWGG 2 cut(s) 491, 849
BstSCI CCNGG 2 cut(s) 489, 847
BstSFI CTRYAG 3 cut(s) 789, 906, 1005
BstV1I GCAGC 3 cut(s) 518, 626, 1023
BstV2I GAAGAC 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 799
BstYI RGATCY 1 cut(s) 799
Bsu15I ATCGAT 1 cut(s) 643
BsuRI GGCC 1 cut(s) 489
BsuTUI ATCGAT 1 cut(s) 643
BtgI CCRYGG 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 350, 1022
ClaI ATCGAT 1 cut(s) 643
CseI GACGC 1 cut(s) 849
Csp6I GTAC 2 cut(s) 92, 748
CviAII CATG 4 cut(s) 15, 326, 820, 962
CviQI GTAC 2 cut(s) 92, 748
DdeI CTNAG 3 cut(s) 153, 591, 654
DpnI GATC 4 cut(s) 565, 774, 801, 941
DpnII GATC 4 cut(s) 563, 772, 799, 939
DraI TTTAAA 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 609
Eco47I GGWCC 2 cut(s) 350, 1022
EcoRI GAATTC 1 cut(s) 965
EcoRII CCWGG 2 cut(s) 489, 847
EcoT14I CCWWGG 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 4 cut(s) 18, 329, 823, 965
FalI AAGNNNNNCTT 2 cut(s) 670, 702
FatI CATG 4 cut(s) 14, 325, 819, 961
FblI GTMKAC 1 cut(s) 909
Fnu4HI GCNGC 3 cut(s) 507, 615, 1012
Fsp4HI GCNGC 3 cut(s) 507, 615, 1012
FspBI CTAG 1 cut(s) 1036
GluI GCNGC 3 cut(s) 507, 615, 1012
GsuI CTGGAG 2 cut(s) 222, 390
HaeIII GGCC 1 cut(s) 489
HgaI GACGC 1 cut(s) 849
Hin1II CATG 4 cut(s) 18, 329, 823, 965
HinfI GANTC 5 cut(s) 103, 239, 518, 580, 640
HphI GGTGA 2 cut(s) 341, 355
Hpy166II GTNNAC 4 cut(s) 53, 698, 817, 910
Hpy188I TCNGA 9 cut(s) 48, 123, 156, 244, 501, 577, 592, 655, 1031
Hpy188III TCNNGA 6 cut(s) 201, 298, 357, 407, 474, 533
Hpy8I GTNNAC 4 cut(s) 53, 698, 817, 910
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 5 cut(s) 93, 363, 622, 660, 926
HpyCH4III ACNGT 4 cut(s) 65, 790, 810, 999
HpyCH4V TGCA 4 cut(s) 141, 506, 782, 836
HpyF10VI GCNNNNNNNGC 1 cut(s) 739
HpyF3I CTNAG 3 cut(s) 153, 591, 654
Hsp92II CATG 4 cut(s) 18, 329, 823, 965
Kzo9I GATC 4 cut(s) 563, 772, 799, 939
LguI GCTCTTC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 151, 409
Lsp1109I GCAGC 3 cut(s) 518, 626, 1023
LweI GCATC 3 cut(s) 160, 791, 823
MaeI CTAG 1 cut(s) 1036
MaeIII GTNAC 2 cut(s) 598, 874
MalI GATC 4 cut(s) 565, 774, 801, 941
MboI GATC 4 cut(s) 563, 772, 799, 939
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 1 cut(s) 799
MluCI AATT 6 cut(s) 179, 375, 702, 777, 855, 965
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 2 cut(s) 101, 820
MseI TTAA 2 cut(s) 315, 380
MspA1I CMGCKG 1 cut(s) 617
MspR9I CCNGG 2 cut(s) 491, 849
MunI CAATTG 1 cut(s) 777
MvaI CCWGG 2 cut(s) 491, 849
MwoI GCNNNNNNNGC 1 cut(s) 739
NdeII GATC 4 cut(s) 563, 772, 799, 939
NlaIII CATG 4 cut(s) 18, 329, 823, 965
NmuCI GTSAC 1 cut(s) 598
PciSI GCTCTTC 1 cut(s) 25
PfeI GAWTC 4 cut(s) 239, 518, 580, 640
PflMI CCANNNNNTGG 1 cut(s) 764
PkrI GCNGC 3 cut(s) 508, 616, 1013
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
Psp6I CCWGG 2 cut(s) 489, 847
PspGI CCWGG 2 cut(s) 489, 847
PspPI GGNCC 2 cut(s) 350, 1022
PsuI RGATCY 1 cut(s) 799
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 2 cut(s) 93, 749
RsaNI GTAC 2 cut(s) 92, 748
SapI GCTCTTC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 315, 380
SatI GCNGC 3 cut(s) 507, 615, 1012
Sau3AI GATC 4 cut(s) 563, 772, 799, 939
Sau96I GGNCC 2 cut(s) 350, 1022
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 2 cut(s) 491, 849
SfaNI GCATC 3 cut(s) 160, 791, 823
SfcI CTRYAG 3 cut(s) 789, 906, 1005
SinI GGWCC 2 cut(s) 350, 1022
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 6 cut(s) 179, 375, 702, 777, 855, 965
SspMI CTAG 1 cut(s) 1036
StyD4I CCNGG 2 cut(s) 489, 847
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 4 cut(s) 65, 790, 810, 999
TaqI TCGA 3 cut(s) 183, 643, 1017
TasI AATT 6 cut(s) 179, 375, 702, 777, 855, 965
TfiI GAWTC 4 cut(s) 239, 518, 580, 640
Tru1I TTAA 2 cut(s) 315, 380
Tru9I TTAA 2 cut(s) 315, 380
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 3 cut(s) 506, 614, 1011
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 4 cut(s) 573, 686, 945, 978
Van91I CCANNNNNTGG 1 cut(s) 764
VpaK11BI GGWCC 2 cut(s) 350, 1022
XapI RAATTY 2 cut(s) 179, 965
XmiI GTMKAC 1 cut(s) 909
XspI CTAG 1 cut(s) 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.