Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014402

Physical Location & Seq

Genomic Coordinates Reverse (-)

30397006 .. 30400682

Gene Structure 3677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G359900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGTTTCTCTGTCCAATTCATTGCTGTTTCCTCTGACTACATCCAGTGGCTTTTCTCGGTCGGTTAGATTTGCAAGGACAACCAATTGGTGTAGTACTAGTGACAAACAAAAGGGAGAGCCCAGAAACGTTTTATGTGCTTGTATGGCGCCTCCCCCGAACTTGAGGAGCGATGAATCTTTTGCAGCAAAATTTGAGGATTCATTTAAATCAGAGAATTTAAGCACAGTTCGGGAGCCTGAGGATGATTCTGATGTTCTAATCGAGTGTAGAGATGTCTACAAATCATTTGCCGAGAAGCATATATTGAGAGGTGTGAGCTTCAAGATTAGACATGGCGAAGCTGTTGGAATAATTGGGCCTTCTGGCACGGGGAAATCTACAGTTCTAAAGATTATTGCGGGGCTTCTTGCTCCTGACAAGGGAGAGGTATACATTCGAGGTCGAAAGAGAGATGGTTTGATAAGCGATGAGGAGATATCTGCTCTTCGGATTGGATTGGTGTTTCAGAGTGCTGCACTTTTTGATTCTTTGAATGTTCGTGAAAATGTTGGTTTCCTTCTGTATGAAAATTCGAGCATGCCCGATGATCAAATTTCAAAGCTTGTGACTGATAGCTTGGCTGCTGTAGGGTTAAAGGGTGTTGAGGATCGATTACCTTCGGAGCTGTCTGGTGGAATGAAGAAACGAGTTGCTCTGGCTCGGTCTATAATTTGTGATACTACAAAGGAAGCCATAGAGCCAGAGGTGCTCTTATATGATGAGCCAACTGCTGGACTTGATCCTATTGCATCTACTGTGGTAGAAGACCTCATCCGCTCTGTCCATACAAAAGATCAGGCAGCGATTGAGAAGCCTGGGCAGATTGCATCTTATGTTGTTGTTACTCACCAACATAGTACCATTAGACGAGCTGTTGACAGGTTATTGTTTCTCTACGAGGGCAAGATAGTGTGGCAAGGAATGACTCATGAATTCACAACCTCCACAAATCCAATCGTTCAACAGTTTGCTTCTGGGAACTTGGACGGCCCAATTAGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0009507 GO:0009536 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

349

Amino Acids

38.18

Weight (kDa)

5.79

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65410
fragaria_vesca	FvH4_6g00670 FvH4_6g00670
malus_domestica	MD04G1243700.v1.1 MD12G1259300.v1.1
prunus_persica	Prupe.6G359900_v2.0.a1
pyrus_communis	pycom04g21440 pycom12g23770
rosa_chinensis	RchiOBHm_Chr3g0448111
rosa_laevigata	RLG00000025946
rosa_multiflora	Rmu_sc0005969.1_g000027
rosa_roxburghii	Rroxscaffold_6G00426240
rosa_rugosa	Rorug02G0608200
rosa_samantha	Rh3AG007700 Rh3CG007400 Rh3DG007900
rosa_wichuraiana	Rw3G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	148
AccB7I	CCANNNNNTGG	1 cut(s)	773
AccBSI	CCGCTC	1 cut(s)	819
AccI	GTMKAC	2 cut(s)	279, 432
AciI	CCGC	2 cut(s)	401, 817
AclI	AACGTT	1 cut(s)	129
AclWI	GGATC	2 cut(s)	657, 776
AcsI	RAATTY	5 cut(s)	191, 217, 571, 594, 974
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	2 cut(s)	97, 901
AfiI	CCNNNNNNNGG	2 cut(s)	422, 773
AgsI	TTSAA	4 cut(s)	325, 535, 600, 1004
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	856
AluBI	AGCT	6 cut(s)	321, 344, 604, 618, 667, 914
AluI	AGCT	6 cut(s)	321, 344, 604, 618, 667, 914
Alw21I	GWGCWC	1 cut(s)	753
AlwI	GGATC	2 cut(s)	657, 776
AoxI	GGCC	2 cut(s)	359, 1030
ApeKI	GCWGC	4 cut(s)	185, 515, 623, 842
ApoI	RAATTY	5 cut(s)	191, 217, 571, 594, 974
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	359, 1031
AsuHPI	GGTGA	1 cut(s)	881
AxyI	CCTNAGG	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	4 cut(s)	197, 502, 610, 854
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	1 cut(s)	1045
BciT130I	CCWGG	1 cut(s)	858
BclI	TGATCA	1 cut(s)	589
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	2 cut(s)	381, 627
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	4 cut(s)	186, 516, 624, 843
BlsI	GCNGC	4 cut(s)	187, 517, 625, 844
BmcAI	AGTACT	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	858
BmgT120I	GGNCC	2 cut(s)	359, 1031
BmiI	GGNNCC	2 cut(s)	150, 237
BmrFI	CCNGG	1 cut(s)	858
BmsI	GCATC	2 cut(s)	800, 878
BpiI	GAAGAC	1 cut(s)	813
BpuEI	CTTGAG	1 cut(s)	184
Bsa29I	ATCGAT	1 cut(s)	652
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	857
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 773
Bse1I	ACTGG	1 cut(s)	45
Bse21I	CCTNAGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	858
BseCI	ATCGAT	1 cut(s)	652
BseDI	CCNNGG	1 cut(s)	857
BseGI	GGATG	3 cut(s)	41, 250, 813
BseLI	CCNNNNNNNGG	2 cut(s)	422, 773
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	45
BseRI	GAGGAG	2 cut(s)	181, 488
BseXI	GCAGC	4 cut(s)	197, 502, 610, 854
BsgI	GTGCAG	1 cut(s)	501
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	361, 1032
BshNI	GGYRCC	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	652
BsiEI	CGRYCG	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	753
BslI	CCNNNNNNNGG	2 cut(s)	422, 773
BsnI	GGCC	2 cut(s)	361, 1032
Bsp1286I	GDGCHC	2 cut(s)	123, 753
Bsp143I	GATC	4 cut(s)	589, 649, 781, 835
BspACI	CCGC	2 cut(s)	401, 817
BspANI	GGCC	2 cut(s)	361, 1032
BspCNI	CTCAG	1 cut(s)	232
BspDI	ATCGAT	1 cut(s)	652
BspHI	TCATGA	1 cut(s)	970
BspLI	GGNNCC	2 cut(s)	150, 237
BspPI	GGATC	2 cut(s)	657, 776
BspQI	GCTCTTC	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	819
BsrDI	GCAATG	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	857
BssMI	GATC	4 cut(s)	589, 649, 781, 835
BssNAI	GTATAC	1 cut(s)	433
BssNI	GRCGYC	1 cut(s)	149
Bst1107I	GTATAC	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	858
Bst4CI	ACNGT	4 cut(s)	229, 385, 799, 1008
Bst6I	CTCTTC	1 cut(s)	492
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	581
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	3 cut(s)	41, 250, 813
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	4 cut(s)	592, 652, 784, 838
BstMBI	GATC	4 cut(s)	589, 649, 781, 835
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 748
BstNI	CCWGG	1 cut(s)	858
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	856
BstSFI	CTRYAG	2 cut(s)	381, 627
BstV1I	GCAGC	4 cut(s)	197, 502, 610, 854
BstV2I	GAAGAC	1 cut(s)	813
BstZ17I	GTATAC	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	652
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	361, 1032
BsuTUI	ATCGAT	1 cut(s)	652
BtgZI	GCGATG	2 cut(s)	186, 483
BtsCI	GGATG	3 cut(s)	41, 250, 813
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	581
CciI	TCATGA	1 cut(s)	970
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	359, 1031
ClaI	ATCGAT	1 cut(s)	652
Csp6I	GTAC	2 cut(s)	96, 900
CviAII	CATG	3 cut(s)	335, 580, 971
CviQI	GTAC	2 cut(s)	96, 900
DdeI	CTNAG	1 cut(s)	240
DinI	GGCGCC	1 cut(s)	150
DpnI	GATC	4 cut(s)	591, 651, 783, 837
DpnII	GATC	4 cut(s)	589, 649, 781, 835
DraI	TTTAAA	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	123
Eco32I	GATATC	1 cut(s)	480
Eco81I	CCTNAGG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	974
EcoRII	CCWGG	1 cut(s)	856
EcoRV	GATATC	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	123
EgeI	GGCGCC	1 cut(s)	150
EheI	GGCGCC	1 cut(s)	150
FaeI	CATG	3 cut(s)	338, 583, 974
FatI	CATG	3 cut(s)	334, 579, 970
FauI	CCCGC	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	589
FblI	GTMKAC	2 cut(s)	279, 432
Fnu4HI	GCNGC	4 cut(s)	186, 516, 624, 843
FokI	GGATG	3 cut(s)	28, 257, 800
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	4 cut(s)	186, 516, 624, 843
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	4 cut(s)	186, 516, 624, 843
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	361, 1032
HhaI	GCGC	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	338, 583, 974
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	5 cut(s)	176, 200, 248, 527, 967
HphI	GGTGA	1 cut(s)	881
Hpy166II	GTNNAC	3 cut(s)	280, 433, 919
Hpy188I	TCNGA	6 cut(s)	36, 214, 253, 492, 510, 664
Hpy188III	TCNNGA	5 cut(s)	233, 325, 416, 542, 971
Hpy8I	GTNNAC	3 cut(s)	280, 433, 919
HpyAV	CCTTC	3 cut(s)	372, 569, 669
HpyCH4III	ACNGT	4 cut(s)	229, 385, 799, 1008
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	5 cut(s)	74, 185, 518, 791, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 748
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	338, 583, 974
HspAI	GCGC	1 cut(s)	149
KasI	GGCGCC	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	4 cut(s)	589, 649, 781, 835
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	4 cut(s)	168, 235, 418, 664
Lsp1109I	GCAGC	4 cut(s)	197, 502, 610, 854
LweI	GCATC	2 cut(s)	800, 878
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	3 cut(s)	101, 607, 883
MalI	GATC	4 cut(s)	591, 651, 783, 837
MbiI	CCGCTC	1 cut(s)	819
MboI	GATC	4 cut(s)	589, 649, 781, 835
MboII	GAAGA	3 cut(s)	479, 694, 818
MfeI	CAATTG	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	123, 753
Mly113I	GGCGCC	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	961
MmeI	TCCRAC	1 cut(s)	328
MseI	TTAA	3 cut(s)	207, 221, 635
MspR9I	CCNGG	1 cut(s)	858
MunI	CAATTG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	858
MwoI	GCNNNNNNNGC	2 cut(s)	146, 748
NarI	GGCGCC	1 cut(s)	149
NdeII	GATC	4 cut(s)	589, 649, 781, 835
NlaIII	CATG	3 cut(s)	338, 583, 974
NlaIV	GGNNCC	2 cut(s)	150, 237
NmeAIII	GCCGAG	1 cut(s)	319
NmuCI	GTSAC	2 cut(s)	101, 607
NspI	RCATGY	1 cut(s)	583
PaeI	GCATGC	1 cut(s)	583
PagI	TCATGA	1 cut(s)	970
PciSI	GCTCTTC	1 cut(s)	492
PfeI	GAWTC	4 cut(s)	176, 200, 248, 527
PflMI	CCANNNNNTGG	1 cut(s)	773
PkrI	GCNGC	4 cut(s)	187, 517, 625, 844
PleI	GAGTC	1 cut(s)	961
PluTI	GGCGCC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	961
Psp1406I	AACGTT	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	856
PspN4I	GGNNCC	2 cut(s)	150, 237
PspPI	GGNCC	2 cut(s)	359, 1031
RsaI	GTAC	2 cut(s)	97, 901
RsaNI	GTAC	2 cut(s)	96, 900
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	207, 221, 635
SatI	GCNGC	4 cut(s)	186, 516, 624, 843
Sau3AI	GATC	4 cut(s)	589, 649, 781, 835
Sau96I	GGNCC	2 cut(s)	359, 1031
ScaI	AGTACT	1 cut(s)	97
SchI	GAGTC	1 cut(s)	961
ScrFI	CCNGG	1 cut(s)	858
SduI	GDGCHC	2 cut(s)	123, 753
SfaNI	GCATC	2 cut(s)	800, 878
SfcI	CTRYAG	2 cut(s)	381, 627
SfoI	GGCGCC	1 cut(s)	150
SmiI	ATTTAAAT	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
SpeI	ACTAGT	1 cut(s)	98
SphI	GCATGC	1 cut(s)	583
SsiI	CCGC	2 cut(s)	401, 817
SspDI	GGCGCC	1 cut(s)	148
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	856
SwaI	ATTTAAAT	1 cut(s)	208
TaaI	ACNGT	4 cut(s)	229, 385, 799, 1008
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	5 cut(s)	264, 439, 445, 575, 652
TaqII	GACCGA	2 cut(s)	48, 693
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	4 cut(s)	176, 200, 248, 527
Tru1I	TTAA	3 cut(s)	207, 221, 635
Tru9I	TTAA	3 cut(s)	207, 221, 635
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	2 cut(s)	101, 607
TseI	GCWGC	4 cut(s)	185, 515, 623, 842
Tsp45I	GTSAC	2 cut(s)	101, 607
TspDTI	ATGAA	6 cut(s)	9, 189, 192, 582, 695, 987
TspRI	CASTG	1 cut(s)	52
Van91I	CCANNNNNTGG	1 cut(s)	773
XapI	RAATTY	5 cut(s)	191, 217, 571, 594, 974
XceI	RCATGY	1 cut(s)	583
XmiI	GTMKAC	2 cut(s)	279, 432
XspI	CTAG	1 cut(s)	99
ZrmI	AGTACT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.