Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

OG0014402

Physical Location & Seq

Genomic Coordinates Forward (+)

85712 .. 89621

Gene Structure 3910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005969.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atggcgcctccccagaactatgaatcctatgcagcaaaattcgaggattcattgaaatcagaggatttatccacagtaagagaacccgaggatgactctgatgttctgattgagtgcagagacgtccataagtcatttggtgagaaggatatattgagaggtgtgagcttcaagattagacatggtgaagcagttggaataattggtccttctggtaccgggaaatctacagttttaaagattatggcaggtcttcttgcgcctgacaagggagaggtatacattcgaggtcgaaagagggatggtttgatcagcgatgaggagttatctggtcttcgaattggattggtgtttcagagtgctgcactttttgattcgttgactgttcgtgaaaatgttggtttccttctgtatgaaaattcaagcatgcccgaggatcaaatttcaaagctcgtgactgatagcttggctgctgttgggttaaagggagttgaggatcgattaccatcggagctgtctggtggaatgaagaaaagagttgcattggctcgatctataatttgtgataccacaaaggaagccatagagccagaggtgctcttatatgatgaaccaacagctggacttgatccgattgcatctactgttgtagaagacctcatccgctctgtccatacagaagagcaggcagcgtcagagaagtctgggcagattgcatcttacgttgttgtaactcaccaacatagcaccatcagacgagctgttgacaggttattgtttctgtatgagggcaagatagtctggcaaggaatgactgatgaattcacaacctcaacgaatccaatcgttcaacagtttgcatctgggagcttggatggcccaattaaatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0009507 GO:0009536 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

297

Amino Acids

32.47

Weight (kDa)

4.9

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65410
fragaria_vesca	FvH4_6g00670 FvH4_6g00670
malus_domestica	MD04G1243700.v1.1 MD12G1259300.v1.1
prunus_persica	Prupe.6G359900_v2.0.a1
pyrus_communis	pycom04g21440 pycom12g23770
rosa_chinensis	RchiOBHm_Chr3g0448111
rosa_laevigata	RLG00000025946
rosa_multiflora	Rmu_sc0005969.1_g000027
rosa_roxburghii	Rroxscaffold_6G00426240
rosa_rugosa	Rorug02G0608200
rosa_samantha	Rh3AG007700 Rh3CG007400 Rh3DG007900
rosa_wichuraiana	Rw3G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	239
Acc65I	GGTACC	1 cut(s)	215
AccB1I	GGYRCC	2 cut(s)	4, 215
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccBSI	CCGCTC	1 cut(s)	666
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	1 cut(s)	664
AclWI	GGATC	3 cut(s)	444, 504, 623
AcsI	RAATTY	4 cut(s)	38, 418, 441, 821
AcyI	GRCGYC	2 cut(s)	5, 123
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	2 cut(s)	269, 620
AgsI	TTSAA	5 cut(s)	55, 172, 423, 447, 851
AloI	GAACNNNNNNTCC	2 cut(s)	8, 40
AluBI	AGCT	7 cut(s)	168, 451, 465, 514, 620, 761, 870
AluI	AGCT	7 cut(s)	168, 451, 465, 514, 620, 761, 870
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	3 cut(s)	444, 504, 623
Ama87I	CYCGRG	2 cut(s)	86, 431
AoxI	GGCC	1 cut(s)	877
ApeKI	GCWGC	4 cut(s)	32, 362, 470, 689
ApoI	RAATTY	4 cut(s)	38, 418, 441, 821
Asp718I	GGTACC	1 cut(s)	215
AspLEI	GCGC	2 cut(s)	7, 262
AspS9I	GGNCC	2 cut(s)	206, 878
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	3 cut(s)	152, 197, 728
AsuII	TTCGAA	1 cut(s)	337
AvaI	CYCGRG	2 cut(s)	86, 431
AvaII	GGWCC	1 cut(s)	206
BanI	GGYRCC	2 cut(s)	4, 215
BauI	CACGAG	1 cut(s)	452
BbsI	GAAGAC	3 cut(s)	245, 326, 660
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	4 cut(s)	44, 349, 457, 701
BccI	CCATC	4 cut(s)	296, 514, 758, 869
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	239
BisI	GCNGC	4 cut(s)	33, 363, 471, 690
BlsI	GCNGC	4 cut(s)	34, 364, 472, 691
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	206
BmeT110I	CYCGRG	2 cut(s)	86, 431
BmgT120I	GGNCC	2 cut(s)	206, 878
BmiI	GGNNCC	2 cut(s)	6, 217
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	647, 725, 869
BpiI	GAAGAC	3 cut(s)	245, 326, 660
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
Bpu14I	TTCGAA	1 cut(s)	337
BpuMI	CCSGG	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	499
BsaBI	GATNNNNATC	1 cut(s)	505
BsaHI	GRCGYC	2 cut(s)	5, 123
BsaJI	CCNNGG	2 cut(s)	87, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 620
Bse8I	GATNNNNATC	1 cut(s)	505
BseCI	ATCGAT	1 cut(s)	499
BseDI	CCNNGG	2 cut(s)	87, 432
BseGI	GGATG	4 cut(s)	97, 307, 660, 880
BseJI	GATNNNNATC	1 cut(s)	505
BseLI	CCNNNNNNNGG	2 cut(s)	269, 620
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	4 cut(s)	44, 349, 457, 701
BsgI	GTGCAG	2 cut(s)	136, 348
BshFI	GGCC	1 cut(s)	879
BshNI	GGYRCC	2 cut(s)	4, 215
BshVI	ATCGAT	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	600
BsiHKCI	CYCGRG	2 cut(s)	86, 431
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	269, 620
BsmAI	GTCTC	1 cut(s)	114
BsmBI	CGTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	879
BsoBI	CYCGRG	2 cut(s)	86, 431
Bsp119I	TTCGAA	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	5 cut(s)	309, 436, 496, 551, 628
BspACI	CCGC	1 cut(s)	664
BspANI	GGCC	1 cut(s)	879
BspDI	ATCGAT	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	6, 217
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	3 cut(s)	444, 504, 623
BspQI	GCTCTTC	1 cut(s)	675
BspT104I	TTCGAA	1 cut(s)	337
BspT107I	GGYRCC	2 cut(s)	4, 215
BsrBI	CCGCTC	1 cut(s)	666
BssECI	CCNNGG	2 cut(s)	87, 432
BssMI	GATC	5 cut(s)	309, 436, 496, 551, 628
BssNAI	GTATAC	1 cut(s)	280
BssNI	GRCGYC	2 cut(s)	5, 123
BssSI	CACGAG	1 cut(s)	452
Bst1107I	GTATAC	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	452
Bst4CI	ACNGT	5 cut(s)	76, 232, 385, 646, 855
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	2 cut(s)	5, 123
BstBI	TTCGAA	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	428, 687
BstF5I	GGATG	4 cut(s)	97, 307, 660, 880
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 262
BstKTI	GATC	5 cut(s)	312, 439, 499, 554, 631
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	5 cut(s)	309, 436, 496, 551, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	595, 876
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	44, 349, 457, 701
BstV2I	GAAGAC	3 cut(s)	245, 326, 660
BstZ17I	GTATAC	1 cut(s)	280
Bsu15I	ATCGAT	1 cut(s)	499
BsuRI	GGCC	1 cut(s)	879
BsuTUI	ATCGAT	1 cut(s)	499
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	4 cut(s)	97, 307, 660, 880
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	428, 687
CfoI	GCGC	2 cut(s)	7, 262
Cfr13I	GGNCC	2 cut(s)	206, 878
ClaI	ATCGAT	1 cut(s)	499
CseI	GACGC	1 cut(s)	681
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	2 cut(s)	182, 427
CviQI	GTAC	1 cut(s)	216
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	5 cut(s)	311, 438, 498, 553, 630
DpnII	GATC	5 cut(s)	309, 436, 496, 551, 628
DraI	TTTAAA	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
Eco47I	GGWCC	1 cut(s)	206
Eco88I	CYCGRG	2 cut(s)	86, 431
EcoRI	GAATTC	1 cut(s)	821
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	2 cut(s)	185, 430
FatI	CATG	2 cut(s)	181, 426
FbaI	TGATCA	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	33, 363, 471, 690
FokI	GGATG	4 cut(s)	104, 314, 647, 887
Fsp4HI	GCNGC	4 cut(s)	33, 363, 471, 690
GlaI	GCGC	2 cut(s)	6, 261
GluI	GCNGC	4 cut(s)	33, 363, 471, 690
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	879
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	681
HhaI	GCGC	2 cut(s)	7, 262
Hin1I	GRCGYC	2 cut(s)	5, 123
Hin1II	CATG	2 cut(s)	185, 430
Hin6I	GCGC	2 cut(s)	5, 260
HinP1I	GCGC	2 cut(s)	5, 260
HincII	GTYRAC	2 cut(s)	381, 766
HindII	GTYRAC	2 cut(s)	381, 766
HinfI	GANTC	5 cut(s)	23, 47, 95, 374, 838
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	3 cut(s)	152, 197, 728
Hpy166II	GTNNAC	3 cut(s)	280, 381, 766
Hpy188I	TCNGA	8 cut(s)	61, 100, 108, 357, 511, 633, 697, 755
Hpy188III	TCNNGA	3 cut(s)	172, 389, 454
Hpy8I	GTNNAC	3 cut(s)	280, 381, 766
HpyAV	CCTTC	3 cut(s)	139, 219, 416
HpyCH4III	ACNGT	5 cut(s)	76, 232, 385, 646, 855
HpyCH4IV	ACGT	2 cut(s)	123, 723
HpyCH4V	TGCA	7 cut(s)	32, 117, 365, 542, 638, 716, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	595, 876
HpySE526I	ACGT	2 cut(s)	123, 723
Hsp92I	GRCGYC	2 cut(s)	5, 123
Hsp92II	CATG	2 cut(s)	185, 430
HspAI	GCGC	2 cut(s)	5, 260
KasI	GGCGCC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	309, 436, 496, 551, 628
LguI	GCTCTTC	1 cut(s)	675
LmnI	GCTCC	2 cut(s)	511, 867
Lsp1109I	GCAGC	4 cut(s)	44, 349, 457, 701
LweI	GCATC	3 cut(s)	647, 725, 869
MaeII	ACGT	2 cut(s)	123, 723
MaeIII	GTNAC	2 cut(s)	454, 730
MalI	GATC	5 cut(s)	311, 438, 498, 553, 630
MbiI	CCGCTC	1 cut(s)	666
MboI	GATC	5 cut(s)	309, 436, 496, 551, 628
MboII	GAAGA	5 cut(s)	245, 326, 541, 665, 692
MhlI	GDGCHC	1 cut(s)	600
MluCI	AATT	8 cut(s)	38, 201, 339, 418, 441, 558, 821, 882
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	175
MseI	TTAA	3 cut(s)	236, 482, 885
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	595, 876
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	5 cut(s)	309, 436, 496, 551, 628
NlaIII	CATG	2 cut(s)	185, 430
NlaIV	GGNNCC	2 cut(s)	6, 217
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	337
PaeI	GCATGC	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	675
PfeI	GAWTC	4 cut(s)	23, 47, 374, 838
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	4 cut(s)	34, 364, 472, 691
PleI	GAGTC	1 cut(s)	89
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	6, 217
PspPI	GGNCC	2 cut(s)	206, 878
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SapI	GCTCTTC	1 cut(s)	675
SaqAI	TTAA	3 cut(s)	236, 482, 885
SatI	GCNGC	4 cut(s)	33, 363, 471, 690
Sau3AI	GATC	5 cut(s)	309, 436, 496, 551, 628
Sau96I	GGNCC	2 cut(s)	206, 878
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	3 cut(s)	647, 725, 869
SfcI	CTRYAG	1 cut(s)	228
SfoI	GGCGCC	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	337
SinI	GGWCC	1 cut(s)	206
SphI	GCATGC	1 cut(s)	430
Sse9I	AATT	8 cut(s)	38, 201, 339, 418, 441, 558, 821, 882
SsiI	CCGC	1 cut(s)	664
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	890
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	5 cut(s)	76, 232, 385, 646, 855
TaiI	ACGT	2 cut(s)	126, 726
TaqI	TCGA	6 cut(s)	42, 286, 292, 337, 499, 550
TasI	AATT	8 cut(s)	38, 201, 339, 418, 441, 558, 821, 882
TfiI	GAWTC	4 cut(s)	23, 47, 374, 838
Tru1I	TTAA	3 cut(s)	236, 482, 885
Tru9I	TTAA	3 cut(s)	236, 482, 885
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	4 cut(s)	32, 362, 470, 689
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	6 cut(s)	36, 39, 429, 542, 624, 834
Van91I	CCANNNNNTGG	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	4 cut(s)	38, 418, 441, 821
XceI	RCATGY	1 cut(s)	430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	279
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.