Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014402

Physical Location & Seq

Genomic Coordinates Reverse (-)

72506103 .. 72513729

Gene Structure 7627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0608200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3159 bp

ATGGGAGGGAGAGAGGTAGAAGAAAGCAGCAGAAGCCGGAAAGTAGTGAACTTGAGCGTCAGAAGAAAATGGCTGAAGACGAAAGAGAAATGGCTCGTCGTCGTCGGCGTCGTTCTTCACGCCGTTTACATGCTCAGCATCTTCGACATCTACTTCAAGTCCCCCATTGTTCACGGTATGGATCTCGTCTCCCCTCGCTTCCCCGCCCCCGCCAAACGCCTCGTCTTACTCGTCGCTGACGGTCTCCGAGCGGACAAGTTCTTCGAGTCCGACGCCGCCGGAAAGTTCAGAGCGCCGTTTCTGAGGAGCGTGATCAAGGAGCGAGGCCGGTGGGGAGTCTCTCATGCTCGGCCGCCGACTGAGTCGAGGCCGGGACACGTGGCGATCATTGCTGGCTTCTATGAGGATCCGAGTGCTGTTACGAAAGGGTGGAAAGCTAATCCTGTTGAATTCGATTCGGTGTTTAACCGGAGCCGGCATACATTTTCGTATGGGAGTCCGGATATAGTTCCGATTTTCTGTGCTGCATTGCCTCACACTACTTGGAACAGTTATCCTCATGATTTCGAAGACTTTGCTACTGATGCCTCCTTTCTGGATGAGTGGTCGTTTGATCAATTTCAGAGCCTAATGAATAGGTCCAAAGAGGACCCAAAGTTGAAGGAGTTACTTTTACAGGATAATCTTGTTGTGTTTTTGCACCTACTTGGTTGTGATTCAAATGGTCATGCACATCGGCCCTTTTCGTCCATCTATCTCAATAATGTCGCGGTTGTTGACAGTATTGCTGAAAGGGTTTATAATCTTCTTGAAGATTACTACAAGGACAATCGTACAGCATACATATTTACTGCTGATCATGGAATGCATGATAAAGGTAGCCACGGAGATGGACATCCTTCAAACACTGATACTCCCCTTGTTGTTTGGGGAGCAGGTGTTAAACATCCAAAGCCTATTTCCAGTAGCAGCCATGGAGATGGACATTCTGATTGTGGTACTCGTTTTGTTGATGACCATATGCATGACACGCCAACGCCTAAAGAATGGGGCCTTCATGGCATTGAAAGGGTGGATGTCAATCAAGCTGATATCACACCTCTCATGTCAACACTTCTTGGATTGCCATGTCCTGTAAACTCTGTTGGGAGTTTACCCCTTGATTACATAGACATGAAAAAGACAGATGAAGTTGAAGCTGTTCTAGCCAATACAAAGCAAATTCTCAATCAATTTGTTCGGAAATCACAAACCAAGGAGGCAACTTCATTATATTTTAAGCCTTTCAAACCATTGGGCCATTATTCATCCCTCTTGGATCAGATTGAGGATCATATATCTAATGGAGATTATGAAGCTGCAAGGAAACTATCTGAAAATCTCCGAGACTTGGCACTGCAAGGACTTCATTATTTTCAAACTTATGATTGGCTGATGCTCATGACTGTAATTATTCTTGGGTATATTGGTTGGATGACCTATATTGTTCTCCATGTGTTGCAATCTTACACGTCATTGGTAGGGGATATATTGACAAAGGAGCAAGCAGATCACCGGACAGATAATACCAAAAAAGTACAACTTTGTGGATGCTTGTTTCTGGGACTACTTAGCATTATACTGTTCATCGAGCAGTCTCCTCCTCTTTACCATGCATATACAACAATGACAGTATTTTTGTGGACACAAATATCTAGTGAATATCGGTTCATAAAAGCATTATGGAAACAGTTACATGGAAGAGAAATAAATTATTTCACAAAAGTTGTAGCCGCTTGTGCTGTCTCAGTATTCATACTTGAATATCTGGTGAATAGCTTCACCGAGAGGAAGCTCTACACATGGTGTTTTCTGACTGTGGGGGTCATAGCCTTTCTTTATCTTTTCAAGTTAATTCCATGGAGATCTGGGATTCCATTCTTTGTTTGTGGTGCATGCTGGTTCTTATCTGTATTTACTTTGATGCCAGCGGAAATTCCGGATAATAATAATCTAGTAATTTGGAGTGGGGTTATGATTATTTTGATCGGAGCAGCTGGGAGGTTTCTAGATCAGCATACTGAAGAAAACAAGTTTTGGCTCGCTATCTGTAATAGTGATGCAAAGAAATCCAAGTTCCCCATGCTCTTTCAATTACAGGCTCTTTTGGTTGGATTATCATCTGTGATGGTGTCAATATCAACATCTCATAGAACAGAGAACCAAGAACTGCATGTCTGGCACCAGATTATAACTTGGTCCATTGCTGGTCCCTCGATGGTACTTCCATTATTTTCAGCAAATGGTCTCTTGTCCCGGCTTACGTCCATATTTCTTGGCTTTGCGCCCACATTTCTTCTATTATCTATCGGATATGAAGCTGTCTTCTATGGTGCTTTTGCTCTTGTACTCATGGCTTGGATACTATTTGAAAACACACTTATTTACTCAAGTAAGGTGAAAAGGTTGTCAAGTTCCTTTAACAATATGGAGGATAATGCCATAGTTGATGGTAGATACTTGCAACTGTCTGACATCAGAATTCCTTTAACCTTTATGGTCTTGTTTAATGTTGCCTTCTTCGGAACGGGAAATTTTGCAAGTATCGCAAGTTTCGAAATCTCATCAGTCTATCGGTTCATTACTGTCTTCAGCGTAAGTGAAGCCTTTTCTTATGGCAGCGTTACTTATCTTCAAGCTATTCATTCCATTTCTGCTTGTCATATGCGTATTCAGTGCAATAACAAAGCTGAACCGACTTCCACGATTGGGATGCTATTTTCTTGTTATATTGTTTTCAGACGTTATGACTATGCATTTCTTCTTCCTGGTCCAGAATACAGGAAGTTGGATGGAAATTGGTTTAGCAGCGGCTTAGAATCGGGGAATCTTGTGGTGAACTCTGATCCAGTACACCAGGCATGGTGTGCGATTGAGCAACAAAGACAGATTAATCCAAATGCAGAGCCATCCTTGTACAATGAAATCCAACCAGAAAATCCAATCATCATAGCTTTTGGCACTCCACCTGGCTCTCTTCAGGGACAAGAAGGCTTGGTTTCATCAAAAGATTTTGCTCACTTTGAATTTTTGTGCAACAAAAGCAATCCAGTTTTCTGCATCAATGAAGCAGCAATCAAACTATTTCAGTCACATTATAGTGACCTCGGTTGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0009507 GO:0009536 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

1052

Amino Acids

118.86

Weight (kDa)

6.32

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfatase	PF00884	249 - 322	6e-07	Sulfatase
PigN	PF04987	467 - 879	4.5e-98	Phosphatidylinositolglycan class N (PIG-N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65410
fragaria_vesca	FvH4_6g00670 FvH4_6g00670
malus_domestica	MD04G1243700.v1.1 MD12G1259300.v1.1
prunus_persica	Prupe.6G359900_v2.0.a1
pyrus_communis	pycom04g21440 pycom12g23770
rosa_chinensis	RchiOBHm_Chr3g0448111
rosa_laevigata	RLG00000025946
rosa_multiflora	Rmu_sc0005969.1_g000027
rosa_roxburghii	Rroxscaffold_6G00426240
rosa_rugosa	Rorug02G0608200
rosa_samantha	Rh3AG007700 Rh3CG007400 Rh3DG007900
rosa_wichuraiana	Rw3G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	801, 2231
AarI	CACCTGC	1 cut(s)	926
Acc36I	ACCTGC	1 cut(s)	926
AccB1I	GGYRCC	1 cut(s)	2220
AccBSI	CCGCTC	1 cut(s)	251
AccII	CGCG	1 cut(s)	770
AccIII	TCCGGA	2 cut(s)	499, 1978
AciI	CCGC	9 cut(s)	204, 210, 251, 276, 353, 770, 1773, 1970, 2850
AclWI	GGATC	6 cut(s)	189, 401, 414, 1326, 1338, 2879
AcoI	YGGCCR	1 cut(s)	350
AcsI	RAATTY	6 cut(s)	449, 1221, 1974, 2520, 2572, 3065
AcuI	CTGAAG	4 cut(s)	95, 2082, 2614, 3002
AcvI	CACGTG	1 cut(s)	379
AcyI	GRCGYC	2 cut(s)	108, 273
AdeI	CACNNNGTG	1 cut(s)	1845
AfaI	GTAC	7 cut(s)	835, 1000, 1578, 2262, 2388, 2892, 2957
AfiI	CCNNNNNNNGG	2 cut(s)	1390, 2748
AflIII	ACRYGT	2 cut(s)	376, 1509
AjiI	CACGTC	1 cut(s)	1512
AjnI	CCWGG	3 cut(s)	2806, 2895, 3007
AjuI	GAANNNNNNNTTGG	2 cut(s)	943, 975
Alw26I	GTCTC	7 cut(s)	193, 248, 343, 1380, 1641, 1789, 2291
AlwI	GGATC	6 cut(s)	189, 401, 414, 1326, 1338, 2879
Aor13HI	TCCGGA	2 cut(s)	499, 1978
AoxI	GGCC	6 cut(s)	325, 350, 368, 737, 1051, 1297
ApeKI	GCWGC	8 cut(s)	27, 524, 969, 1358, 2033, 2658, 2847, 3110
ApoI	RAATTY	6 cut(s)	449, 1221, 1974, 2520, 2572, 3065
ArsI	GACNNNNNNTTYG	6 cut(s)	207, 239, 245, 277, 1660, 1692
AseI	ATTAAT	1 cut(s)	2931
Asp700I	GAANNNNTTC	2 cut(s)	1200, 1817
AspLEI	GCGC	2 cut(s)	295, 2326
AspS9I	GGNCC	8 cut(s)	639, 649, 738, 1051, 1297, 2238, 2249, 2810
AsuC2I	CCSGG	2 cut(s)	372, 2296
AsuHPI	GGTGA	5 cut(s)	1544, 1813, 1822, 2449, 2887
AsuII	TTCGAA	2 cut(s)	567, 2595
AvaII	GGWCC	5 cut(s)	639, 649, 2238, 2249, 2810
BamHI	GGATCC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	2220
BbrPI	CACGTG	1 cut(s)	379
BbsI	GAAGAC	4 cut(s)	83, 576, 2356, 2620
BbvI	GCAGC	8 cut(s)	39, 511, 981, 1345, 2045, 2670, 2859, 3122
BccI	CCATC	8 cut(s)	758, 884, 974, 2161, 2251, 2483, 2825, 2956
BceAI	ACGGC	2 cut(s)	107, 280
BcgI	CGANNNNNNTGC	4 cut(s)	557, 591, 2734, 2768
BciT130I	CCWGG	3 cut(s)	2808, 2897, 3009
BciVI	GTATCC	1 cut(s)	2394
BclI	TGATCA	3 cut(s)	312, 613, 856
BcnI	CCSGG	2 cut(s)	372, 2296
BcoDI	GTCTC	7 cut(s)	193, 248, 343, 1380, 1641, 1789, 2291
BfaI	CTAG	4 cut(s)	1205, 1695, 1994, 2048
BfoI	RGCGCY	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	926
BfuI	GTATCC	1 cut(s)	2394
BglI	GCCNNNNNGGC	1 cut(s)	1059
BglII	AGATCT	1 cut(s)	1904
BlpI	GCTNAGC	1 cut(s)	134
Bme1390I	CCNGG	5 cut(s)	372, 2296, 2808, 2897, 3009
Bme18I	GGWCC	5 cut(s)	639, 649, 2238, 2249, 2810
BmgBI	CACGTC	1 cut(s)	1512
BmgT120I	GGNCC	8 cut(s)	639, 649, 738, 1051, 1297, 2238, 2249, 2810
BmiI	GGNNCC	6 cut(s)	408, 473, 651, 1052, 2222, 2251
BmrFI	CCNGG	5 cut(s)	372, 2296, 2808, 2897, 3009
BmsI	GCATC	8 cut(s)	147, 574, 1425, 1580, 1953, 2089, 2742, 3108
BpiI	GAAGAC	4 cut(s)	83, 576, 2356, 2620
Bpu1102I	GCTNAGC	1 cut(s)	134
Bpu14I	TTCGAA	2 cut(s)	567, 2595
BpuEI	CTTGAG	2 cut(s)	73, 2413
BpuMI	CCSGG	2 cut(s)	372, 2296
BsaAI	YACGTR	1 cut(s)	379
BsaBI	GATNNNNATC	3 cut(s)	894, 1080, 2158
BsaHI	GRCGYC	2 cut(s)	108, 273
BsaI	GGTCTC	2 cut(s)	248, 2291
BsaJI	CCNNGG	5 cut(s)	883, 973, 1254, 1898, 3145
BsaWI	WCCGGW	4 cut(s)	468, 499, 1554, 1978
BsaXI	ACNNNNNCTCC	4 cut(s)	898, 924, 928, 954
Bsc4I	CCNNNNNNNGG	2 cut(s)	1390, 2748
Bse118I	RCCGGY	2 cut(s)	327, 474
Bse1I	ACTGG	3 cut(s)	963, 2888, 3089
Bse3DI	GCAATG	3 cut(s)	387, 527, 2241
Bse8I	GATNNNNATC	3 cut(s)	894, 1080, 2158
BseAI	TCCGGA	2 cut(s)	499, 1978
BseBI	CCWGG	3 cut(s)	2808, 2897, 3009
BseDI	CCNNGG	5 cut(s)	883, 973, 1254, 1898, 3145
BseJI	GATNNNNATC	3 cut(s)	894, 1080, 2158
BseLI	CCNNNNNNNGG	2 cut(s)	1390, 2748
BseMI	GCAATG	3 cut(s)	387, 527, 2241
BseMII	CTCAG	4 cut(s)	148, 293, 351, 1800
BseNI	ACTGG	3 cut(s)	963, 2888, 3089
BseRI	GAGGAG	3 cut(s)	319, 1629, 1632
BseX3I	CGGCCG	1 cut(s)	350
BseXI	GCAGC	8 cut(s)	39, 511, 981, 1345, 2045, 2670, 2859, 3122
BseYI	CCCAGC	1 cut(s)	2036
Bsh1236I	CGCG	1 cut(s)	770
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	6 cut(s)	327, 352, 370, 739, 1053, 1299
BshNI	GGYRCC	1 cut(s)	2220
BsiEI	CGRYCG	1 cut(s)	353
BslFI	GGGAC	6 cut(s)	145, 387, 1617, 2235, 2278, 3036
BslI	CCNNNNNNNGG	2 cut(s)	1390, 2748
BsmAI	GTCTC	7 cut(s)	193, 248, 343, 1380, 1641, 1789, 2291
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	6 cut(s)	145, 387, 1617, 2235, 2278, 3036
BsmI	GAATGC	1 cut(s)	870
BsnI	GGCC	6 cut(s)	327, 352, 370, 739, 1053, 1299
Bso31I	GGTCTC	2 cut(s)	248, 2291
Bsp119I	TTCGAA	2 cut(s)	567, 2595
Bsp13I	TCCGGA	2 cut(s)	499, 1978
Bsp1407I	TGTACA	1 cut(s)	2955
Bsp1720I	GCTNAGC	1 cut(s)	134
Bsp19I	CCATGG	2 cut(s)	973, 1898
BspACI	CCGC	9 cut(s)	204, 210, 251, 276, 353, 770, 1773, 1970, 2850
BspANI	GGCC	6 cut(s)	327, 352, 370, 739, 1053, 1299
BspCNI	CTCAG	4 cut(s)	147, 294, 352, 1799
BspEI	TCCGGA	2 cut(s)	499, 1978
BspFNI	CGCG	1 cut(s)	770
BspHI	TCATGA	2 cut(s)	559, 1440
BspLI	GGNNCC	6 cut(s)	408, 473, 651, 1052, 2222, 2251
BspMI	ACCTGC	1 cut(s)	926
BspPI	GGATC	6 cut(s)	189, 401, 414, 1326, 1338, 2879
BspT104I	TTCGAA	2 cut(s)	567, 2595
BspT107I	GGYRCC	1 cut(s)	2220
BspTNI	GGTCTC	2 cut(s)	248, 2291
BsrBI	CCGCTC	1 cut(s)	251
BsrDI	GCAATG	3 cut(s)	387, 527, 2241
BsrFI	RCCGGY	2 cut(s)	327, 474
BsrGI	TGTACA	1 cut(s)	2955
BsrI	ACTGG	3 cut(s)	963, 2888, 3089
BssAI	RCCGGY	2 cut(s)	327, 474
BssECI	CCNNGG	5 cut(s)	883, 973, 1254, 1898, 3145
BssNI	GRCGYC	2 cut(s)	108, 273
BssT1I	CCWWGG	3 cut(s)	973, 1254, 1898
Bst2UI	CCWGG	3 cut(s)	2808, 2897, 3009
Bst6I	CTCTTC	2 cut(s)	1735, 3021
BstACI	GRCGYC	2 cut(s)	108, 273
BstAPI	GCANNNNNTGC	1 cut(s)	2906
BstAUI	TGTACA	1 cut(s)	2955
BstBAI	YACGTR	1 cut(s)	379
BstBI	TTCGAA	2 cut(s)	567, 2595
BstC8I	GCNNGC	6 cut(s)	394, 476, 1545, 1936, 1968, 2082
BstDEI	CTNAG	6 cut(s)	134, 302, 360, 1610, 1786, 2854
BstDSI	CCRYGG	3 cut(s)	883, 973, 1898
BstFNI	CGCG	1 cut(s)	770
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	2 cut(s)	295, 2326
BstMAI	GTCTC	7 cut(s)	193, 248, 343, 1380, 1641, 1789, 2291
BstMCI	CGRYCG	1 cut(s)	353
BstNI	CCWGG	3 cut(s)	2808, 2897, 3009
BstNSI	RCATGY	3 cut(s)	133, 1938, 2216
BstSCI	CCNGG	5 cut(s)	370, 2294, 2806, 2895, 3007
BstUI	CGCG	1 cut(s)	770
BstV1I	GCAGC	8 cut(s)	39, 511, 981, 1345, 2045, 2670, 2859, 3122
BstV2I	GAAGAC	4 cut(s)	83, 576, 2356, 2620
BstX2I	RGATCY	3 cut(s)	181, 406, 1904
BstXI	CCANNNNNNTGG	2 cut(s)	890, 980
BstYI	RGATCY	3 cut(s)	181, 406, 1904
BstZI	CGGCCG	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	2394
BsuRI	GGCC	6 cut(s)	327, 352, 370, 739, 1053, 1299
BtgI	CCRYGG	3 cut(s)	883, 973, 1898
BtrI	CACGTC	1 cut(s)	1512
BtsI	GCAGTG	1 cut(s)	1394
BtsIMutI	CAGTG	3 cut(s)	906, 1394, 2720
BveI	ACCTGC	1 cut(s)	926
Cac8I	GCNNGC	6 cut(s)	394, 476, 1545, 1936, 1968, 2082
CciI	TCATGA	2 cut(s)	559, 1440
CfoI	GCGC	2 cut(s)	295, 2326
Cfr10I	RCCGGY	2 cut(s)	327, 474
Cfr13I	GGNCC	8 cut(s)	639, 649, 738, 1051, 1297, 2238, 2249, 2810
CseI	GACGC	3 cut(s)	46, 97, 281
Csp6I	GTAC	7 cut(s)	834, 999, 1577, 2261, 2387, 2891, 2956
CviQI	GTAC	7 cut(s)	834, 999, 1577, 2261, 2387, 2891, 2956
DdeI	CTNAG	6 cut(s)	134, 302, 360, 1610, 1786, 2854
DraIII	CACNNNGTG	1 cut(s)	1845
EaeI	YGGCCR	1 cut(s)	350
EagI	CGGCCG	1 cut(s)	350
Eam1104I	CTCTTC	2 cut(s)	1735, 3021
EarI	CTCTTC	2 cut(s)	1735, 3021
EclXI	CGGCCG	1 cut(s)	350
Eco130I	CCWWGG	3 cut(s)	973, 1254, 1898
Eco31I	GGTCTC	2 cut(s)	248, 2291
Eco32I	GATATC	1 cut(s)	1093
Eco47I	GGWCC	5 cut(s)	639, 649, 2238, 2249, 2810
Eco52I	CGGCCG	1 cut(s)	350
Eco57I	CTGAAG	4 cut(s)	95, 2082, 2614, 3002
Eco72I	CACGTG	1 cut(s)	379
EcoO109I	RGGNCCY	2 cut(s)	649, 1051
EcoRI	GAATTC	2 cut(s)	449, 2520
EcoRII	CCWGG	3 cut(s)	2806, 2895, 3007
EcoRV	GATATC	1 cut(s)	1093
EcoT14I	CCWWGG	3 cut(s)	973, 1254, 1898
EcoT22I	ATGCAT	4 cut(s)	870, 1026, 1657, 2797
ErhI	CCWWGG	3 cut(s)	973, 1254, 1898
Esp3I	CGTCTC	1 cut(s)	193
FalI	AAGNNNNNCTT	2 cut(s)	1566, 1598
FaqI	GGGAC	6 cut(s)	145, 387, 1617, 2235, 2278, 3036
FauI	CCCGC	2 cut(s)	211, 217
FauNDI	CATATG	2 cut(s)	1020, 2703
FbaI	TGATCA	3 cut(s)	312, 613, 856
FspBI	CTAG	4 cut(s)	1205, 1695, 1994, 2048
GlaI	GCGC	2 cut(s)	294, 2325
GsaI	CCCAGC	1 cut(s)	2040
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	6 cut(s)	327, 352, 370, 739, 1053, 1299
HgaI	GACGC	3 cut(s)	46, 97, 281
HhaI	GCGC	2 cut(s)	295, 2326
Hin1I	GRCGYC	2 cut(s)	108, 273
Hin6I	GCGC	2 cut(s)	293, 2324
HinP1I	GCGC	2 cut(s)	293, 2324
HincII	GTYRAC	2 cut(s)	778, 1110
HindII	GTYRAC	2 cut(s)	778, 1110
HinfI	GANTC	9 cut(s)	266, 336, 362, 455, 496, 716, 1912, 2858, 2866
HphI	GGTGA	5 cut(s)	1544, 1813, 1822, 2449, 2887
Hpy188III	TCNNGA	8 cut(s)	500, 560, 596, 809, 1441, 1979, 2048, 2813
Hpy99I	CGWCG	6 cut(s)	101, 104, 107, 113, 236, 275
HpyAV	CCTTC	5 cut(s)	655, 909, 1064, 2566, 3023
HpyCH4IV	ACGT	4 cut(s)	378, 1511, 2303, 2782
HpyF3I	CTNAG	6 cut(s)	134, 302, 360, 1610, 1786, 2854
HpySE526I	ACGT	4 cut(s)	378, 1511, 2303, 2782
Hsp92I	GRCGYC	2 cut(s)	108, 273
HspAI	GCGC	2 cut(s)	293, 2324
Kpn2I	TCCGGA	2 cut(s)	499, 1978
KroI	GCCGGC	1 cut(s)	474
KroNI	GCCGGC	1 cut(s)	476
Ksp22I	TGATCA	3 cut(s)	312, 613, 856
LmnI	GCTCC	6 cut(s)	306, 319, 471, 932, 1540, 2030
Lsp1109I	GCAGC	8 cut(s)	39, 511, 981, 1345, 2045, 2670, 2859, 3122
LweI	GCATC	8 cut(s)	147, 574, 1425, 1580, 1953, 2089, 2742, 3108
MaeI	CTAG	4 cut(s)	1205, 1695, 1994, 2048
MaeII	ACGT	4 cut(s)	378, 1511, 2303, 2782
MaeIII	GTNAC	6 cut(s)	418, 666, 1731, 2662, 3129, 3140
MbiI	CCGCTC	1 cut(s)	251
MflI	RGATCY	3 cut(s)	181, 406, 1904
MlyI	GAGTC	4 cut(s)	275, 345, 371, 505
MmeI	TCCRAC	5 cut(s)	294, 1451, 2131, 2808, 2992
Mph1103I	ATGCAT	4 cut(s)	870, 1026, 1657, 2797
MroI	TCCGGA	2 cut(s)	499, 1978
MroNI	GCCGGC	1 cut(s)	474
MroXI	GAANNNNTTC	2 cut(s)	1200, 1817
MseI	TTAA	8 cut(s)	465, 942, 1278, 1892, 2460, 2528, 2547, 2931
MslI	CAYNNNNRTG	5 cut(s)	888, 978, 1023, 1172, 3138
MspA1I	CMGCKG	3 cut(s)	1970, 2036, 2850
MspR9I	CCNGG	5 cut(s)	372, 2296, 2808, 2897, 3009
Mva1269I	GAATGC	1 cut(s)	870
MvaI	CCWGG	3 cut(s)	2808, 2897, 3009
MvnI	CGCG	1 cut(s)	770
NaeI	GCCGGC	1 cut(s)	476
NciI	CCSGG	2 cut(s)	372, 2296
NcoI	CCATGG	2 cut(s)	973, 1898
NdeI	CATATG	2 cut(s)	1020, 2703
NgoMIV	GCCGGC	1 cut(s)	474
NlaIV	GGNNCC	6 cut(s)	408, 473, 651, 1052, 2222, 2251
NmeAIII	GCCGAG	1 cut(s)	328
NmuCI	GTSAC	2 cut(s)	3129, 3140
NsiI	ATGCAT	4 cut(s)	870, 1026, 1657, 2797
NspI	RCATGY	3 cut(s)	133, 1938, 2216
NspV	TTCGAA	2 cut(s)	567, 2595
PaeI	GCATGC	1 cut(s)	1938
PagI	TCATGA	2 cut(s)	559, 1440
PaqCI	CACCTGC	1 cut(s)	926
PcsI	WCGNNNNNNNCGW	4 cut(s)	105, 108, 228, 2592
PctI	GAATGC	1 cut(s)	870
PdiI	GCCGGC	1 cut(s)	476
PdmI	GAANNNNTTC	2 cut(s)	1200, 1817
PfeI	GAWTC	5 cut(s)	455, 716, 1912, 2858, 2866
PflFI	GACNNNGTC	1 cut(s)	361
PleI	GAGTC	4 cut(s)	274, 344, 370, 504
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
PpsI	GAGTC	4 cut(s)	274, 344, 370, 504
Ppu21I	YACGTR	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	649
PshBI	ATTAAT	1 cut(s)	2931
PsiI	TTATAA	2 cut(s)	801, 2231
Psp5II	RGGWCCY	1 cut(s)	649
Psp6I	CCWGG	3 cut(s)	2806, 2895, 3007
PspCI	CACGTG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	2036
PspGI	CCWGG	3 cut(s)	2806, 2895, 3007
PspN4I	GGNNCC	6 cut(s)	408, 473, 651, 1052, 2222, 2251
PspPI	GGNCC	8 cut(s)	639, 649, 738, 1051, 1297, 2238, 2249, 2810
PspPPI	RGGWCCY	1 cut(s)	649
PsuI	RGATCY	3 cut(s)	181, 406, 1904
PsyI	GACNNNGTC	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	2036
RsaI	GTAC	7 cut(s)	835, 1000, 1578, 2262, 2388, 2892, 2957
RsaNI	GTAC	7 cut(s)	834, 999, 1577, 2261, 2387, 2891, 2956
RseI	CAYNNNNRTG	5 cut(s)	888, 978, 1023, 1172, 3138
SaqAI	TTAA	8 cut(s)	465, 942, 1278, 1892, 2460, 2528, 2547, 2931
Sau96I	GGNCC	8 cut(s)	639, 649, 738, 1051, 1297, 2238, 2249, 2810
SchI	GAGTC	4 cut(s)	275, 345, 371, 505
ScrFI	CCNGG	5 cut(s)	372, 2296, 2808, 2897, 3009
SfaNI	GCATC	8 cut(s)	147, 574, 1425, 1580, 1953, 2089, 2742, 3108
SfuI	TTCGAA	2 cut(s)	567, 2595
SinI	GGWCC	5 cut(s)	639, 649, 2238, 2249, 2810
SmiMI	CAYNNNNRTG	5 cut(s)	888, 978, 1023, 1172, 3138
SmlI	CTYRAG	2 cut(s)	52, 2428
SmoI	CTYRAG	2 cut(s)	52, 2428
SphI	GCATGC	1 cut(s)	1938
SsiI	CCGC	9 cut(s)	204, 210, 251, 276, 353, 770, 1773, 1970, 2850
SspMI	CTAG	4 cut(s)	1205, 1695, 1994, 2048
StyD4I	CCNGG	5 cut(s)	370, 2294, 2806, 2895, 3007
StyI	CCWWGG	3 cut(s)	973, 1254, 1898
TaiI	ACGT	4 cut(s)	381, 1514, 2306, 2785
TaqI	TCGA	8 cut(s)	144, 264, 365, 453, 567, 1629, 2255, 2595
TatI	WGTACW	4 cut(s)	1576, 2386, 2890, 2955
TauI	GCSGC	4 cut(s)	278, 355, 1775, 2853
TfiI	GAWTC	5 cut(s)	455, 716, 1912, 2858, 2866
Tru1I	TTAA	8 cut(s)	465, 942, 1278, 1892, 2460, 2528, 2547, 2931
Tru9I	TTAA	8 cut(s)	465, 942, 1278, 1892, 2460, 2528, 2547, 2931
TscAI	CASTG	3 cut(s)	913, 1401, 2720
TseFI	GTSAC	2 cut(s)	3129, 3140
TseI	GCWGC	8 cut(s)	27, 524, 969, 1358, 2033, 2658, 2847, 3110
Tsp45I	GTSAC	2 cut(s)	3129, 3140
TspGWI	ACGGA	1 cut(s)	900
TspRI	CASTG	3 cut(s)	913, 1401, 2720
Tth111I	GACNNNGTC	1 cut(s)	361
VpaK11BI	GGWCC	5 cut(s)	639, 649, 2238, 2249, 2810
VspI	ATTAAT	1 cut(s)	2931
XapI	RAATTY	6 cut(s)	449, 1221, 1974, 2520, 2572, 3065
XbaI	TCTAGA	1 cut(s)	2047
XceI	RCATGY	3 cut(s)	133, 1938, 2216
XmnI	GAANNNNTTC	2 cut(s)	1200, 1817
XspI	CTAG	4 cut(s)	1205, 1695, 1994, 2048
Zsp2I	ATGCAT	4 cut(s)	870, 1026, 1657, 2797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.