Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005316

Physical Location & Seq

Genomic Coordinates Forward (+)

24398143 .. 24400989

Gene Structure 2847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65620.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCATCTTCTTCAACAAACTCACCATGCGCCGCTTGCAAATTCCTCCGGCGAAAATGTCAACCGGAATGTGTATTCGCGCCCTATTTCCCACCGGACCAGCCACAAAAATTCGCAAACGTTCACAAAGTGTTTGGAGCAAGTAACGTGACAAAGCTCCTCAACGAGCTTCACCCTTCACAACGTGAAGACGCAGTGAACTCTTTGGCCTATGAAGCCGACATGCGCCTCCGTGACCCTGTCTACGGCTGCGTCGGCGTCATCTCTCTCCTCCAACATCAGCTTCGTCAGCTTCAGATAGATCTCAGCTGTGCTAAATCTGAGCTCTCTAAGTACCAAAGCCTCGGTATCCTCGCCGCCACTCATCAGAGTCTTGGCATCAACTTACTCGCCGGAGCAGCAGATGGAACAGCCACCGCCGTGAGAGACCACTATCACCACCACCAGTTTTTTCCTAGAGAACAAATGTTTGGTGGCTTGGATGTTCCGGCCGGTAACAACTACGACGGTGGGATTCTTGCCATTGGACAGATCACTCAGTTTCAGCAGCCGAGAGCCGCCGCTGGAGATGATGGTCGCCGTACTGTTGATCCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009799 GO:0009908 GO:0009943 GO:0009944 GO:0009954 GO:0009955 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0065001 GO:0070013 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

199

Amino Acids

21.71

Weight (kDa)

7.07

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	9 - 106	8.6e-43	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65620 AT1G65620 AT1G65620 AT1G65620 AT1G65620
fragaria_vesca	FvH4_6g00042 FvH4_6g00042 FvH4_6g00042 FvH4_6g00042
malus_domestica	MD00G1016900.v1.1 MD12G1261100.v1.1
prunus_persica	Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1
pyrus_communis	pycom12g24260 pycom17g24020
rosa_chinensis	RchiOBHm_Chr3g0447371
rosa_laevigata	RLG00000026004
rosa_multiflora	Rmu_ssc0000473.1_g000010
rosa_roxburghii	Rroxscaffold_6G00425570
rosa_rugosa	Rorug02G0600700 Rorug02G0600800
rosa_samantha	Rh3AG001000 Rh3BG000700 Rh3CG000700 Rh3DG000900
rosa_wichuraiana	Rw3G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	80
AciI	CCGC	5 cut(s)	33, 357, 417, 558, 561
AclI	AACGTT	1 cut(s)	120
AclWI	GGATC	1 cut(s)	584
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	2 cut(s)	41, 110
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	258
AdeI	CACNNNGTG	2 cut(s)	130, 185
AfaI	GTAC	2 cut(s)	335, 583
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	4 cut(s)	267, 299, 453, 485
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	6 cut(s)	157, 169, 283, 292, 309, 325
AluI	AGCT	6 cut(s)	157, 169, 283, 292, 309, 325
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	2 cut(s)	207, 489
ApeKI	GCWGC	3 cut(s)	249, 398, 547
ApoI	RAATTY	2 cut(s)	41, 110
AspLEI	GCGC	3 cut(s)	32, 82, 228
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	3 cut(s)	15, 164, 428
AvaII	GGWCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	3 cut(s)	236, 410, 559
BccI	CCATC	2 cut(s)	398, 566
BceAI	ACGGC	3 cut(s)	262, 404, 564
BciVI	GTATCC	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	1 cut(s)	456
BfuI	GTATCC	1 cut(s)	359
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	7 cut(s)	33, 250, 357, 399, 548, 558, 561
BlsI	GCNGC	7 cut(s)	34, 251, 358, 400, 549, 559, 562
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmsI	GCATC	2 cut(s)	14, 387
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	585
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	445
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	3 cut(s)	312, 319, 551
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	2 cut(s)	149, 260
BseX3I	CGGCCG	1 cut(s)	489
BseXI	GCAGC	3 cut(s)	236, 410, 559
Bsh1236I	CGCG	1 cut(s)	80
Bsh1285I	CGRYCG	1 cut(s)	492
BshFI	GGCC	2 cut(s)	209, 491
BsiEI	CGRYCG	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	6 cut(s)	49, 65, 95, 393, 488, 492
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	420
BsnI	GGCC	2 cut(s)	209, 491
Bso31I	GGTCTC	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	301, 531, 589
BspACI	CCGC	5 cut(s)	33, 357, 417, 558, 561
BspANI	GGCC	2 cut(s)	209, 491
BspCNI	CTCAG	3 cut(s)	313, 318, 550
BspFNI	CGCG	1 cut(s)	80
BspPI	GGATC	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	491
BsrI	ACTGG	1 cut(s)	445
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	3 cut(s)	301, 531, 589
BssNI	GRCGYC	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	509, 586
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	4 cut(s)	305, 321, 330, 537
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	3 cut(s)	32, 82, 228
BstKTI	GATC	3 cut(s)	304, 534, 592
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	3 cut(s)	301, 531, 589
BstMCI	CGRYCG	1 cut(s)	492
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 215, 255, 289, 398
BstNSI	RCATGY	1 cut(s)	226
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	236, 410, 559
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BstZI	CGGCCG	1 cut(s)	489
BsuI	GTATCC	1 cut(s)	359
BsuRI	GGCC	2 cut(s)	209, 491
BtsCI	GGATG	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	3 cut(s)	32, 82, 228
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	97
CseI	GACGC	3 cut(s)	200, 241, 247
Csp6I	GTAC	2 cut(s)	334, 582
CviAII	CATG	2 cut(s)	27, 223
CviQI	GTAC	2 cut(s)	334, 582
DdeI	CTNAG	4 cut(s)	305, 321, 330, 537
DpnI	GATC	3 cut(s)	303, 533, 591
DpnII	GATC	3 cut(s)	301, 531, 589
DraIII	CACNNNGTG	2 cut(s)	130, 185
EaeI	YGGCCR	1 cut(s)	489
EagI	CGGCCG	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	325
EclXI	CGGCCG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	97
Eco52I	CGGCCG	1 cut(s)	489
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	2 cut(s)	30, 226
FaiI	YATR	3 cut(s)	28, 213, 224
FatI	CATG	2 cut(s)	26, 222
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	7 cut(s)	33, 250, 357, 399, 548, 558, 561
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	7 cut(s)	33, 250, 357, 399, 548, 558, 561
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	3 cut(s)	31, 81, 227
GluI	GCNGC	7 cut(s)	33, 250, 357, 399, 548, 558, 561
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	2 cut(s)	209, 491
HapII	CCGG	6 cut(s)	49, 65, 95, 393, 488, 492
HgaI	GACGC	3 cut(s)	200, 241, 247
HhaI	GCGC	3 cut(s)	32, 82, 228
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	30, 226
Hin6I	GCGC	3 cut(s)	30, 80, 226
HinP1I	GCGC	3 cut(s)	30, 80, 226
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	370, 514
HpaII	CCGG	6 cut(s)	49, 65, 95, 393, 488, 492
HphI	GGTGA	3 cut(s)	15, 164, 428
Hpy166II	GTNNAC	4 cut(s)	62, 124, 199, 244
Hpy188I	TCNGA	3 cut(s)	297, 322, 369
Hpy188III	TCNNGA	1 cut(s)	597
Hpy8I	GTNNAC	4 cut(s)	62, 124, 199, 244
Hpy99I	CGWCG	2 cut(s)	257, 509
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	2 cut(s)	509, 586
HpyCH4IV	ACGT	3 cut(s)	120, 147, 184
HpyCH4V	TGCA	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 215, 255, 289, 398
HpyF3I	CTNAG	4 cut(s)	305, 321, 330, 537
HpySE526I	ACGT	3 cut(s)	120, 147, 184
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	30, 226
HspAI	GCGC	3 cut(s)	30, 80, 226
Kzo9I	GATC	3 cut(s)	301, 531, 589
LmnI	GCTCC	3 cut(s)	137, 162, 395
Lsp1109I	GCAGC	3 cut(s)	236, 410, 559
LweI	GCATC	2 cut(s)	14, 387
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	3 cut(s)	120, 147, 184
MaeIII	GTNAC	4 cut(s)	143, 148, 233, 494
MalI	GATC	3 cut(s)	303, 533, 591
MboI	GATC	3 cut(s)	301, 531, 589
MboII	GAAGA	2 cut(s)	3, 200
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	2 cut(s)	41, 110
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	56, 170, 239, 281, 353, 362
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	2 cut(s)	309, 563
MspI	CCGG	6 cut(s)	49, 65, 95, 393, 488, 492
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	5 cut(s)	36, 215, 255, 289, 398
NdeII	GATC	3 cut(s)	301, 531, 589
NlaIII	CATG	2 cut(s)	30, 226
NmeAIII	GCCGAG	1 cut(s)	576
NmuCI	GTSAC	2 cut(s)	148, 233
NspI	RCATGY	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	514
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	7 cut(s)	34, 251, 358, 400, 549, 559, 562
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	327
Psp1406I	AACGTT	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	309
RsaI	GTAC	2 cut(s)	335, 583
RsaNI	GTAC	2 cut(s)	334, 582
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	327
SatI	GCNGC	7 cut(s)	33, 250, 357, 399, 548, 558, 561
Sau3AI	GATC	3 cut(s)	301, 531, 589
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	9 cut(s)	123, 150, 159, 171, 187, 285, 294, 311, 327
SfaNI	GCATC	2 cut(s)	14, 387
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	2 cut(s)	41, 110
SsiI	CCGC	5 cut(s)	33, 357, 417, 558, 561
SspMI	CTAG	1 cut(s)	456
SstI	GAGCTC	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	509, 586
TaiI	ACGT	3 cut(s)	123, 150, 187
TasI	AATT	2 cut(s)	41, 110
TauI	GCSGC	4 cut(s)	35, 359, 560, 563
TfiI	GAWTC	1 cut(s)	514
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	148, 233
TseI	GCWGC	3 cut(s)	249, 398, 547
Tsp45I	GTSAC	2 cut(s)	148, 233
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	2 cut(s)	221, 582
TspRI	CASTG	1 cut(s)	201
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	2 cut(s)	41, 110
XceI	RCATGY	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.