Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005316

Physical Location & Seq

Genomic Coordinates Reverse (-)

24596422 .. 24597168

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g24260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCATCGTCGTCGACGAATTCGCCATGCGCCGCGTGTAAGTTCCTGCGACGCAAGTGCCAGCCAGAGTGCGTATTTGCGCCATACTTCCCACCGGACCAGCCGCAGAAGTTTGCTAATGTTCACAAAGTTTTTGGGGCCAGCAACGTCACTAAACTGCTCAACGAGTTGCACCCCCACCAGCGTGAGGACGCCGTCAACTCTCTCGCCTACGAGGCCGACATGCGCCTCCGCGATCCCGTCTACGGCTGCGTTGGAGTCATCTCTCTCCTCCAGCACCAACTCCGCCAACTTCAGATGGATCTGACCTGTGCTAAATCCGAACTCTCCAAATATCAGAACCTGCAGGGTCTCACTGCCAGCCACGGACTCATAGCCGCCGCCGCTGCTGCCGCCGCAACTGCCACTGCTGCCACCCACACCCACAATAACAATCACCACCATCCTCTACATTTACAGTCCTCTTCACTCAACAACTTGGGAATGGAGATAAATCTCATTTCAGGCGGCGGTGGTGGCCGAGAACACTACCCCCACCAGTTTTTCCCCAGAGATCGAGAACGAGACCATCATTCCCATCATCAGCAACAGATGATGATTAGGAACTTTGATGCCGGAAACAACTACGATGCAAGCCTTCTGTCCATGAACGCTGCTGCAGGGGGCATTCATGGCCAACTCAGTCACCAGTTCCAGCAAACTAGGGCTGCTGCTGGCGACGACCGCCGAACCATTGATCCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009799 GO:0009908 GO:0009943 GO:0009944 GO:0009954 GO:0009955 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0065001 GO:0070013 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

249

Amino Acids

27.29

Weight (kDa)

7.79

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	9 - 106	5.8e-43	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65620 AT1G65620 AT1G65620 AT1G65620 AT1G65620
fragaria_vesca	FvH4_6g00042 FvH4_6g00042 FvH4_6g00042 FvH4_6g00042
malus_domestica	MD00G1016900.v1.1 MD12G1261100.v1.1
prunus_persica	Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1
pyrus_communis	pycom12g24260 pycom17g24020
rosa_chinensis	RchiOBHm_Chr3g0447371
rosa_laevigata	RLG00000026004
rosa_multiflora	Rmu_ssc0000473.1_g000010
rosa_roxburghii	Rroxscaffold_6G00425570
rosa_rugosa	Rorug02G0600700 Rorug02G0600800
rosa_samantha	Rh3AG001000 Rh3BG000700 Rh3CG000700 Rh3DG000900
rosa_wichuraiana	Rw3G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	351
AccI	GTMKAC	2 cut(s)	14, 243
AccII	CGCG	2 cut(s)	35, 234
AclWI	GGATC	3 cut(s)	230, 309, 731
AcoI	YGGCCR	2 cut(s)	517, 673
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	187, 245
AleI	CACNNNNGTG	1 cut(s)	183
AloI	GAACNNNNNNTCC	1 cut(s)	721
Alw26I	GTCTC	2 cut(s)	356, 558
AlwI	GGATC	3 cut(s)	230, 309, 731
AlwNI	CAGNNNCTG	1 cut(s)	343
AoxI	GGCC	4 cut(s)	138, 216, 517, 673
ApeKI	GCWGC	8 cut(s)	249, 386, 389, 410, 653, 656, 707, 710
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	3 cut(s)	32, 82, 228
AspS9I	GGNCC	2 cut(s)	97, 138
AsuHPI	GGTGA	2 cut(s)	428, 677
AvaII	GGWCC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	675
BbvI	GCAGC	8 cut(s)	236, 373, 376, 397, 640, 643, 694, 697
BccI	CCATC	4 cut(s)	292, 450, 576, 585
BceAI	ACGGC	2 cut(s)	179, 262
BcgI	CGANNNNNNTGC	3 cut(s)	28, 39, 73
BcoDI	GTCTC	2 cut(s)	356, 558
BfaI	CTAG	1 cut(s)	702
BfmI	CTRYAG	2 cut(s)	344, 657
BfuAI	ACCTGC	1 cut(s)	351
BglI	GCCNNNNNGGC	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	97, 138
BmiI	GGNNCC	1 cut(s)	139
BmsI	GCATC	3 cut(s)	14, 601, 619
BpmI	CTGGAG	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	356, 558
BsaJI	CCNNGG	1 cut(s)	364
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 245
Bse1I	ACTGG	2 cut(s)	538, 688
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	2 cut(s)	187, 245
BseMII	CTCAG	1 cut(s)	694
BseNI	ACTGG	2 cut(s)	538, 688
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	8 cut(s)	236, 373, 376, 397, 640, 643, 694, 697
Bsh1236I	CGCG	2 cut(s)	35, 234
Bsh1285I	CGRYCG	1 cut(s)	724
BshFI	GGCC	4 cut(s)	140, 218, 519, 675
BsiEI	CGRYCG	1 cut(s)	724
BsiSI	CCGG	2 cut(s)	95, 615
BslI	CCNNNNNNNGG	2 cut(s)	187, 245
BsmAI	GTCTC	2 cut(s)	356, 558
BsmI	GAATGC	1 cut(s)	666
BsnI	GGCC	4 cut(s)	140, 218, 519, 675
Bso31I	GGTCTC	2 cut(s)	356, 558
Bsp143I	GATC	4 cut(s)	235, 301, 553, 736
BspANI	GGCC	4 cut(s)	140, 218, 519, 675
BspCNI	CTCAG	1 cut(s)	693
BspFNI	CGCG	2 cut(s)	35, 234
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	2 cut(s)	348, 661
BspMI	ACCTGC	1 cut(s)	351
BspPI	GGATC	3 cut(s)	230, 309, 731
BspTNI	GGTCTC	2 cut(s)	356, 558
BsrI	ACTGG	2 cut(s)	538, 688
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	4 cut(s)	235, 301, 553, 736
BssNI	GRCGYC	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	459
Bst6I	CTCTTC	1 cut(s)	469
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	5 cut(s)	62, 142, 361, 634, 715
BstDEI	CTNAG	1 cut(s)	680
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	2 cut(s)	35, 234
BstHHI	GCGC	3 cut(s)	32, 82, 228
BstKTI	GATC	4 cut(s)	238, 304, 556, 739
BstMAI	GTCTC	2 cut(s)	356, 558
BstMBI	GATC	4 cut(s)	235, 301, 553, 736
BstMCI	CGRYCG	1 cut(s)	724
BstNSI	RCATGY	1 cut(s)	226
BstSFI	CTRYAG	2 cut(s)	344, 657
BstUI	CGCG	2 cut(s)	35, 234
BstV1I	GCAGC	8 cut(s)	236, 373, 376, 397, 640, 643, 694, 697
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	4 cut(s)	140, 218, 519, 675
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	442
BtsI	GCAGTG	2 cut(s)	354, 405
BtsIMutI	CAGTG	2 cut(s)	354, 405
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	5 cut(s)	62, 142, 361, 634, 715
CaiI	CAGNNNCTG	1 cut(s)	343
CfoI	GCGC	3 cut(s)	32, 82, 228
Cfr13I	GGNCC	2 cut(s)	97, 138
CseI	GACGC	2 cut(s)	60, 200
CviAII	CATG	4 cut(s)	27, 223, 646, 671
DdeI	CTNAG	1 cut(s)	680
DpnI	GATC	4 cut(s)	237, 303, 555, 738
DpnII	GATC	4 cut(s)	235, 301, 553, 736
EaeI	YGGCCR	2 cut(s)	517, 673
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
EciI	GGCGGA	1 cut(s)	275
Eco31I	GGTCTC	2 cut(s)	356, 558
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	19
FaeI	CATG	4 cut(s)	30, 226, 649, 674
FaiI	YATR	7 cut(s)	28, 85, 224, 374, 647, 672, 745
FatI	CATG	4 cut(s)	26, 222, 645, 670
FblI	GTMKAC	2 cut(s)	14, 243
FokI	GGATG	1 cut(s)	429
FspBI	CTAG	1 cut(s)	702
GlaI	GCGC	3 cut(s)	31, 81, 227
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	4 cut(s)	140, 218, 519, 675
HapII	CCGG	2 cut(s)	95, 615
HgaI	GACGC	2 cut(s)	60, 200
HhaI	GCGC	3 cut(s)	32, 82, 228
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	30, 226, 649, 674
Hin6I	GCGC	3 cut(s)	30, 80, 226
HinP1I	GCGC	3 cut(s)	30, 80, 226
HincII	GTYRAC	2 cut(s)	15, 199
HindII	GTYRAC	2 cut(s)	15, 199
HinfI	GANTC	2 cut(s)	258, 369
HpaII	CCGG	2 cut(s)	95, 615
HphI	GGTGA	2 cut(s)	428, 677
Hpy166II	GTNNAC	4 cut(s)	15, 124, 199, 244
Hpy188I	TCNGA	4 cut(s)	297, 306, 322, 339
Hpy188III	TCNNGA	1 cut(s)	557
Hpy8I	GTNNAC	4 cut(s)	15, 124, 199, 244
Hpy99I	CGWCG	5 cut(s)	13, 16, 19, 54, 722
HpyAV	CCTTC	1 cut(s)	647
HpyCH4III	ACNGT	1 cut(s)	459
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	4 cut(s)	172, 346, 632, 659
HpyF3I	CTNAG	1 cut(s)	680
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	30, 226, 649, 674
HspAI	GCGC	3 cut(s)	30, 80, 226
Kzo9I	GATC	4 cut(s)	235, 301, 553, 736
Lsp1109I	GCAGC	8 cut(s)	236, 373, 376, 397, 640, 643, 694, 697
LweI	GCATC	3 cut(s)	14, 601, 619
MaeI	CTAG	1 cut(s)	702
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	148, 683
MalI	GATC	4 cut(s)	237, 303, 555, 738
MboI	GATC	4 cut(s)	235, 301, 553, 736
MboII	GAAGA	1 cut(s)	456
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	1 cut(s)	19
MluNI	TGGCCA	1 cut(s)	675
MlyI	GAGTC	2 cut(s)	267, 363
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	6 cut(s)	181, 208, 239, 281, 456, 472
Mox20I	TGGCCA	1 cut(s)	675
MscI	TGGCCA	1 cut(s)	675
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	675
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	2 cut(s)	95, 615
Mva1269I	GAATGC	1 cut(s)	666
MvnI	CGCG	2 cut(s)	35, 234
NdeII	GATC	4 cut(s)	235, 301, 553, 736
NlaIII	CATG	4 cut(s)	30, 226, 649, 674
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	2 cut(s)	148, 683
NspI	RCATGY	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	666
PflFI	GACNNNGTC	1 cut(s)	194
PleI	GAGTC	2 cut(s)	266, 363
PpsI	GAGTC	2 cut(s)	266, 363
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	2 cut(s)	97, 138
PstI	CTGCAG	2 cut(s)	348, 661
PstNI	CAGNNNCTG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	183
SalI	GTCGAC	1 cut(s)	13
Sau3AI	GATC	4 cut(s)	235, 301, 553, 736
Sau96I	GGNCC	2 cut(s)	97, 138
SbfI	CCTGCAGG	1 cut(s)	348
SchI	GAGTC	2 cut(s)	267, 363
SdaI	CCTGCAGG	1 cut(s)	348
SetI	ASST	3 cut(s)	150, 311, 345
SfaNI	GCATC	3 cut(s)	14, 601, 619
SfcI	CTRYAG	2 cut(s)	344, 657
SgrDI	CGTCGACG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse8387I	CCTGCAGG	1 cut(s)	348
Sse9I	AATT	1 cut(s)	19
SspMI	CTAG	1 cut(s)	702
TaaI	ACNGT	1 cut(s)	459
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	14, 556
TasI	AATT	1 cut(s)	19
TauI	GCSGC	8 cut(s)	35, 106, 380, 383, 386, 395, 398, 510
TscAI	CASTG	2 cut(s)	361, 412
TseFI	GTSAC	2 cut(s)	148, 683
TseI	GCWGC	8 cut(s)	249, 386, 389, 410, 653, 656, 707, 710
Tsp45I	GTSAC	2 cut(s)	148, 683
TspDTI	ATGAA	3 cut(s)	659, 662, 732
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	361, 412
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	226
XmiI	GTMKAC	2 cut(s)	14, 243
XspI	CTAG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.