Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005316

Physical Location & Seq

Genomic Coordinates Forward (+)

76871 .. 79089

Gene Structure 2219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41483

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCATCGTCGTCGTCAAATTCGCCGTGTGCAGCCTGTAAGTTTTTGCGTCGCAAGTGCCAGCCGGAGTGCGTATTTGCTCCGTACTTCCCACCGGACCAGCCCCAGAAGTTTGCAAATGTTCACAAAGTCTTTGGGGCGAGCAACGTGACCAAGCTGCTTAACGAGTTGCACCCCCACCAGCGTGAGGACGCTGTCAATTCTCTTGCCTACGAGGCTGACATGCGCCTCCGTGATCCCGTCTACGGTTGCGTCGGAGTCATCTCTCTTCTCCAACACCAACTCCGCCAGCTTCAGATGGATCTAACCTGCGCCAAATCTGAACTCTCGAAATACCAAAACCTCCAGGGAATCACTAGCCACGGACTTATAGCAGCCGCCGCCGCCGCCGCCGCCAGCCACCACAGTAACAACATTCTTAATAATCAATATAACTTTTTGTCCTCGTCCCGGGAGAGGGAGAGAGACATCAATCTGATCTCTAGTACCACCACTGGCATTGGCATTGGCACCGGAGGGGGAGGAGGAGGCCGCGGATCAGCAGACCAATATAATAGTATATCACACCACCAGTTCTTCCCCAGAGATCAGCAACAACAACAGATGATCAGGACATTTGATCAGGCGGCAGCGGGAAACATTAACTATGATGCAAGCAGCCTTTTGGCCATGAACGTCTCAGCCGGCATTCCATTTCAGCAACCTAGGGCTGCTGCTGGGGATGACCGCCGAACCATTGATCCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009799 GO:0009908 GO:0009943 GO:0009944 GO:0009954 GO:0009955 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0065001 GO:0070013 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

249

Amino Acids

27.08

Weight (kDa)

8.23

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	9 - 106	5.9e-43	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65620 AT1G65620 AT1G65620 AT1G65620 AT1G65620
fragaria_vesca	FvH4_6g00042 FvH4_6g00042 FvH4_6g00042 FvH4_6g00042
malus_domestica	MD00G1016900.v1.1 MD12G1261100.v1.1
prunus_persica	Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1
pyrus_communis	pycom12g24260 pycom17g24020
rosa_chinensis	RchiOBHm_Chr3g0447371
rosa_laevigata	RLG00000026004
rosa_multiflora	Rmu_ssc0000473.1_g000010
rosa_roxburghii	Rroxscaffold_6G00425570
rosa_rugosa	Rorug02G0600700 Rorug02G0600800
rosa_samantha	Rh3AG001000 Rh3BG000700 Rh3CG000700 Rh3DG000900
rosa_wichuraiana	Rw3G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	534
AclWI	GGATC	4 cut(s)	230, 309, 544, 734
AcoI	YGGCCR	1 cut(s)	666
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	2 cut(s)	86, 487
AfiI	CCNNNNNNNGG	5 cut(s)	187, 245, 450, 456, 457
AjnI	CCWGG	1 cut(s)	345
AleI	CACNNNNGTG	1 cut(s)	183
AloI	GAACNNNNNNTCC	1 cut(s)	724
AluBI	AGCT	2 cut(s)	157, 292
AluI	AGCT	2 cut(s)	157, 292
Alw26I	GTCTC	2 cut(s)	459, 682
AlwI	GGATC	4 cut(s)	230, 309, 544, 734
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	2 cut(s)	529, 666
ApeKI	GCWGC	7 cut(s)	32, 157, 374, 629, 657, 710, 713
ApoI	RAATTY	1 cut(s)	19
AspA2I	CCTAGG	1 cut(s)	704
AspLEI	GCGC	2 cut(s)	228, 314
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	2 cut(s)	451, 452
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	97
AvrII	CCTAGG	1 cut(s)	704
BalI	TGGCCA	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	509
BbvI	GCAGC	7 cut(s)	44, 144, 386, 641, 669, 697, 700
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	1 cut(s)	10
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	347
BclI	TGATCA	2 cut(s)	606, 619
BcnI	CCSGG	2 cut(s)	451, 452
BcoDI	GTCTC	2 cut(s)	459, 682
BfaI	CTAG	3 cut(s)	357, 483, 705
BfuAI	ACCTGC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	215
BlnI	CCTAGG	1 cut(s)	704
Bme1390I	CCNGG	3 cut(s)	347, 451, 452
Bme18I	GGWCC	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	3 cut(s)	347, 451, 452
BmsI	GCATC	2 cut(s)	14, 640
BpmI	CTGGAG	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	451, 452
BsaJI	CCNNGG	5 cut(s)	346, 361, 450, 532, 704
BsaWI	WCCGGW	2 cut(s)	94, 512
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	5 cut(s)	187, 245, 450, 456, 457
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	2 cut(s)	499, 571
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	5 cut(s)	346, 361, 450, 532, 704
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	5 cut(s)	187, 245, 450, 456, 457
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	2 cut(s)	499, 571
BseRI	GAGGAG	2 cut(s)	537, 540
BseXI	GCAGC	7 cut(s)	44, 144, 386, 641, 669, 697, 700
BseYI	CCCAGC	1 cut(s)	716
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	2 cut(s)	531, 668
BshNI	GGYRCC	1 cut(s)	509
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	5 cut(s)	65, 95, 451, 513, 684
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	5 cut(s)	187, 245, 450, 456, 457
BsmAI	GTCTC	2 cut(s)	459, 682
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	687
BsnI	GGCC	2 cut(s)	531, 668
BsoBI	CYCGRG	1 cut(s)	450
Bsp143I	GATC	8 cut(s)	235, 301, 477, 536, 586, 606, 619, 739
BspANI	GGCC	2 cut(s)	531, 668
BspCNI	CTCAG	1 cut(s)	692
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	4 cut(s)	230, 309, 544, 734
BspT107I	GGYRCC	1 cut(s)	509
BsrFI	RCCGGY	1 cut(s)	683
BsrI	ACTGG	2 cut(s)	499, 571
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	5 cut(s)	346, 361, 450, 532, 704
BssMI	GATC	8 cut(s)	235, 301, 477, 536, 586, 606, 619, 739
BssT1I	CCWWGG	1 cut(s)	704
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	248, 407
Bst6I	CTCTTC	1 cut(s)	273
BstC8I	GCNNGC	6 cut(s)	62, 142, 290, 397, 655, 685
BstDEI	CTNAG	2 cut(s)	679, 747
BstDSI	CCRYGG	2 cut(s)	361, 532
BstF5I	GGATG	1 cut(s)	727
BstFNI	CGCG	1 cut(s)	534
BstHHI	GCGC	2 cut(s)	228, 314
BstKTI	GATC	8 cut(s)	238, 304, 480, 539, 589, 609, 622, 742
BstMAI	GTCTC	2 cut(s)	459, 682
BstMBI	GATC	8 cut(s)	235, 301, 477, 536, 586, 606, 619, 739
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 380, 383, 386, 389, 392
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	3 cut(s)	345, 449, 450
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	7 cut(s)	44, 144, 386, 641, 669, 697, 700
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	531, 668
BtgI	CCRYGG	2 cut(s)	361, 532
BtsCI	GGATG	1 cut(s)	727
BtsIMutI	CAGTG	1 cut(s)	492
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	6 cut(s)	62, 142, 290, 397, 655, 685
CfoI	GCGC	2 cut(s)	228, 314
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	1 cut(s)	97
Cfr42I	CCGCGG	1 cut(s)	535
Cfr9I	CCCGGG	1 cut(s)	450
CseI	GACGC	3 cut(s)	38, 200, 241
Csp6I	GTAC	2 cut(s)	85, 486
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	2 cut(s)	223, 670
CviQI	GTAC	2 cut(s)	85, 486
DdeI	CTNAG	2 cut(s)	679, 747
DpnI	GATC	8 cut(s)	237, 303, 479, 538, 588, 608, 621, 741
DpnII	GATC	8 cut(s)	235, 301, 477, 536, 586, 606, 619, 739
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	704
ErhI	CCWWGG	1 cut(s)	704
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	2 cut(s)	226, 673
FaiI	YATR	7 cut(s)	224, 371, 432, 552, 560, 648, 671
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	222, 669
FauI	CCCGC	1 cut(s)	625
FbaI	TGATCA	2 cut(s)	606, 619
FblI	GTMKAC	1 cut(s)	243
FokI	GGATG	1 cut(s)	734
FspBI	CTAG	3 cut(s)	357, 483, 705
GlaI	GCGC	2 cut(s)	227, 313
GsaI	CCCAGC	1 cut(s)	720
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	531, 668
HapII	CCGG	5 cut(s)	65, 95, 451, 513, 684
HgaI	GACGC	3 cut(s)	38, 200, 241
HhaI	GCGC	2 cut(s)	228, 314
Hin1II	CATG	2 cut(s)	226, 673
Hin6I	GCGC	2 cut(s)	226, 312
HinP1I	GCGC	2 cut(s)	226, 312
HinfI	GANTC	2 cut(s)	258, 351
HpaII	CCGG	5 cut(s)	65, 95, 451, 513, 684
Hpy166II	GTNNAC	2 cut(s)	124, 244
Hpy188I	TCNGA	4 cut(s)	257, 297, 322, 477
Hpy188III	TCNNGA	2 cut(s)	328, 610
Hpy8I	GTNNAC	2 cut(s)	124, 244
Hpy99I	CGWCG	4 cut(s)	13, 16, 54, 257
HpyCH4III	ACNGT	2 cut(s)	248, 407
HpyCH4IV	ACGT	2 cut(s)	147, 675
HpyCH4V	TGCA	4 cut(s)	32, 116, 172, 653
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 380, 383, 386, 389, 392
HpyF3I	CTNAG	2 cut(s)	679, 747
HpySE526I	ACGT	2 cut(s)	147, 675
Hsp92II	CATG	2 cut(s)	226, 673
HspAI	GCGC	2 cut(s)	226, 312
KroI	GCCGGC	1 cut(s)	683
KroNI	GCCGGC	1 cut(s)	685
Ksp22I	TGATCA	2 cut(s)	606, 619
KspI	CCGCGG	1 cut(s)	535
Kzo9I	GATC	8 cut(s)	235, 301, 477, 536, 586, 606, 619, 739
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	7 cut(s)	44, 144, 386, 641, 669, 697, 700
LweI	GCATC	2 cut(s)	14, 640
MaeI	CTAG	3 cut(s)	357, 483, 705
MaeII	ACGT	2 cut(s)	147, 675
MaeIII	GTNAC	2 cut(s)	148, 407
MalI	GATC	8 cut(s)	237, 303, 479, 538, 588, 608, 621, 741
MboI	GATC	8 cut(s)	235, 301, 477, 536, 586, 606, 619, 739
MboII	GAAGA	2 cut(s)	260, 568
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	668
MluCI	AATT	2 cut(s)	19, 199
MluNI	TGGCCA	1 cut(s)	668
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	2 cut(s)	235, 298
Mox20I	TGGCCA	1 cut(s)	668
MroNI	GCCGGC	1 cut(s)	683
MscI	TGGCCA	1 cut(s)	668
MseI	TTAA	3 cut(s)	162, 420, 642
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	668
MspA1I	CMGCKG	2 cut(s)	534, 632
MspI	CCGG	5 cut(s)	65, 95, 451, 513, 684
MspR9I	CCNGG	3 cut(s)	347, 451, 452
Mva1269I	GAATGC	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	6 cut(s)	215, 380, 383, 386, 389, 392
NaeI	GCCGGC	1 cut(s)	685
NciI	CCSGG	2 cut(s)	451, 452
NdeII	GATC	8 cut(s)	235, 301, 477, 536, 586, 606, 619, 739
NgoMIV	GCCGGC	1 cut(s)	683
NlaIII	CATG	2 cut(s)	226, 673
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	183
PctI	GAATGC	1 cut(s)	687
PdiI	GCCGGC	1 cut(s)	685
PfeI	GAWTC	1 cut(s)	351
PflFI	GACNNNGTC	1 cut(s)	194
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	2 cut(s)	86, 487
RsaNI	GTAC	2 cut(s)	85, 486
RseI	CAYNNNNRTG	1 cut(s)	183
SacII	CCGCGG	1 cut(s)	535
SaqAI	TTAA	3 cut(s)	162, 420, 642
Sau3AI	GATC	8 cut(s)	235, 301, 477, 536, 586, 606, 619, 739
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	3 cut(s)	347, 451, 452
SetI	ASST	7 cut(s)	150, 159, 294, 311, 345, 678, 706
SfaNI	GCATC	2 cut(s)	14, 640
Sfr303I	CCGCGG	1 cut(s)	535
SgrBI	CCGCGG	1 cut(s)	535
SinI	GGWCC	1 cut(s)	97
SmaI	CCCGGG	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	2 cut(s)	19, 199
SspMI	CTAG	3 cut(s)	357, 483, 705
StyD4I	CCNGG	3 cut(s)	345, 449, 450
StyI	CCWWGG	1 cut(s)	704
TaaI	ACNGT	2 cut(s)	248, 407
TaiI	ACGT	2 cut(s)	150, 678
TaqI	TCGA	1 cut(s)	329
TasI	AATT	2 cut(s)	19, 199
TauI	GCSGC	8 cut(s)	380, 383, 386, 389, 392, 395, 534, 629
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	3 cut(s)	162, 420, 642
Tru9I	TTAA	3 cut(s)	162, 420, 642
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	7 cut(s)	32, 157, 374, 629, 657, 710, 713
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	686
TspGWI	ACGGA	3 cut(s)	72, 221, 378
TspMI	CCCGGG	1 cut(s)	450
TspRI	CASTG	1 cut(s)	499
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	226
XmaI	CCCGGG	1 cut(s)	450
XmaJI	CCTAGG	1 cut(s)	704
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	3 cut(s)	357, 483, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.