Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005316

Physical Location & Seq

Genomic Coordinates Forward (+)

32804560 .. 32807714

Gene Structure 3155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1261100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCATCATCGTCGACGAATTCACCATGCGCCGCGTGTAAGTTCCTGCGACGCAAGTGCCAGCCAGAGTGCGTATTTGCGCCGTACTTCCCACCGGACCAGCCGCAGAAGTTTGCTAATGTTCACAAAGTTTTTGGGGCCAGCAACGTCACTAAACTGCTCAACGAGTTGCACCCCCACCAGCGTGAGGACGCCGTCAACTCTCTCGCCTACGAGGCCGACATGCGCCTCCGCGATCCCGTCTACGGCTGCGTTGGAGTCATCTCTCTCCTCCAGCACCAACTCCGCCAACTTCAGATGGATCTGACCTGTGCTAAATCCGAACTCTCCAAATATCAGAACTTGCAGGGTCTCACTGCCAGCCACGGACTCATAGCCGCCGCCGCTGCTGCCGCCGCCGCAACTGCCACTGCTGCCACCCACACCCACAATAACAATAATAATAACAATCACCACCATCCTCTACATTTACAGTCCTCTTCACTCAACAACTTGGGAATGGGGATAAATCTCATTTCAGGCGGCGGTGGTGGCCGAGAACACTACCCCCACCAGTTTTTCCCCAGAGATCGAGAACGAGAACGAGACCATCATTCCCATCATCAGCAACAGATGATGATTAGGAGCTTTGATGCCGGAAACAACTACGATGCAAGCCTTCTGTCCATGAACGCTGCTGTAGGGGGCATTCATGGCCAACTCAGTCATCAGTTCCAGCAAACTAGGGCTGCTGCTGGCGACGACCGCCGAACCATTGATCCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009799 GO:0009908 GO:0009943 GO:0009944 GO:0009954 GO:0009955 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0065001 GO:0070013 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

256

Amino Acids

28.03

Weight (kDa)

8.26

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	9 - 106	6.2e-43	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65620 AT1G65620 AT1G65620 AT1G65620 AT1G65620
fragaria_vesca	FvH4_6g00042 FvH4_6g00042 FvH4_6g00042 FvH4_6g00042
malus_domestica	MD00G1016900.v1.1 MD12G1261100.v1.1
prunus_persica	Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1
pyrus_communis	pycom12g24260 pycom17g24020
rosa_chinensis	RchiOBHm_Chr3g0447371
rosa_laevigata	RLG00000026004
rosa_multiflora	Rmu_ssc0000473.1_g000010
rosa_roxburghii	Rroxscaffold_6G00425570
rosa_rugosa	Rorug02G0600700 Rorug02G0600800
rosa_samantha	Rh3AG001000 Rh3BG000700 Rh3CG000700 Rh3DG000900
rosa_wichuraiana	Rw3G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	14, 243
AccII	CGCG	2 cut(s)	35, 234
AclWI	GGATC	3 cut(s)	230, 309, 752
AcoI	YGGCCR	2 cut(s)	532, 694
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	187, 245
AleI	CACNNNNGTG	1 cut(s)	183
AloI	GAACNNNNNNTCC	1 cut(s)	742
AluBI	AGCT	1 cut(s)	627
AluI	AGCT	1 cut(s)	627
Alw26I	GTCTC	2 cut(s)	356, 579
AlwI	GGATC	3 cut(s)	230, 309, 752
AoxI	GGCC	4 cut(s)	138, 216, 532, 694
ApeKI	GCWGC	7 cut(s)	249, 386, 389, 413, 674, 728, 731
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	3 cut(s)	32, 82, 228
AspS9I	GGNCC	2 cut(s)	97, 138
AsuHPI	GGTGA	2 cut(s)	15, 443
AvaII	GGWCC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	696
BbvI	GCAGC	7 cut(s)	236, 373, 376, 400, 661, 715, 718
BccI	CCATC	4 cut(s)	292, 465, 597, 606
BceAI	ACGGC	3 cut(s)	67, 179, 262
BcgI	CGANNNNNNTGC	3 cut(s)	28, 39, 73
BcoDI	GTCTC	2 cut(s)	356, 579
BfaI	CTAG	1 cut(s)	723
BfmI	CTRYAG	1 cut(s)	678
BglI	GCCNNNNNGGC	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	97, 138
BmiI	GGNNCC	1 cut(s)	139
BmsI	GCATC	3 cut(s)	14, 622, 640
BpmI	CTGGAG	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	356, 579
BsaJI	CCNNGG	1 cut(s)	364
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 245
Bse1I	ACTGG	1 cut(s)	553
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	2 cut(s)	187, 245
BseMII	CTCAG	1 cut(s)	715
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	7 cut(s)	236, 373, 376, 400, 661, 715, 718
Bsh1236I	CGCG	2 cut(s)	35, 234
Bsh1285I	CGRYCG	1 cut(s)	745
BshFI	GGCC	4 cut(s)	140, 218, 534, 696
BsiEI	CGRYCG	1 cut(s)	745
BsiSI	CCGG	2 cut(s)	95, 636
BslI	CCNNNNNNNGG	2 cut(s)	187, 245
BsmAI	GTCTC	2 cut(s)	356, 579
BsmI	GAATGC	1 cut(s)	687
BsnI	GGCC	4 cut(s)	140, 218, 534, 696
Bso31I	GGTCTC	2 cut(s)	356, 579
Bsp143I	GATC	4 cut(s)	235, 301, 568, 757
BspANI	GGCC	4 cut(s)	140, 218, 534, 696
BspCNI	CTCAG	1 cut(s)	714
BspFNI	CGCG	2 cut(s)	35, 234
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	3 cut(s)	230, 309, 752
BspTNI	GGTCTC	2 cut(s)	356, 579
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	4 cut(s)	235, 301, 568, 757
BssNI	GRCGYC	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	474
Bst6I	CTCTTC	1 cut(s)	484
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	5 cut(s)	62, 142, 361, 655, 736
BstDEI	CTNAG	1 cut(s)	701
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	2 cut(s)	35, 234
BstHHI	GCGC	3 cut(s)	32, 82, 228
BstKTI	GATC	4 cut(s)	238, 304, 571, 760
BstMAI	GTCTC	2 cut(s)	356, 579
BstMBI	GATC	4 cut(s)	235, 301, 568, 757
BstMCI	CGRYCG	1 cut(s)	745
BstNSI	RCATGY	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	678
BstUI	CGCG	2 cut(s)	35, 234
BstV1I	GCAGC	7 cut(s)	236, 373, 376, 400, 661, 715, 718
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	4 cut(s)	140, 218, 534, 696
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	2 cut(s)	354, 408
BtsIMutI	CAGTG	2 cut(s)	354, 408
Cac8I	GCNNGC	5 cut(s)	62, 142, 361, 655, 736
CfoI	GCGC	3 cut(s)	32, 82, 228
Cfr13I	GGNCC	2 cut(s)	97, 138
CseI	GACGC	2 cut(s)	60, 200
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	4 cut(s)	27, 223, 667, 692
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	701
DpnI	GATC	4 cut(s)	237, 303, 570, 759
DpnII	GATC	4 cut(s)	235, 301, 568, 757
EaeI	YGGCCR	2 cut(s)	532, 694
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
EciI	GGCGGA	1 cut(s)	275
Eco31I	GGTCTC	2 cut(s)	356, 579
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	19
FaeI	CATG	4 cut(s)	30, 226, 670, 695
FaiI	YATR	5 cut(s)	28, 224, 374, 668, 693
FatI	CATG	4 cut(s)	26, 222, 666, 691
FblI	GTMKAC	2 cut(s)	14, 243
FokI	GGATG	1 cut(s)	444
FspBI	CTAG	1 cut(s)	723
GlaI	GCGC	3 cut(s)	31, 81, 227
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	4 cut(s)	140, 218, 534, 696
HapII	CCGG	2 cut(s)	95, 636
HgaI	GACGC	2 cut(s)	60, 200
HhaI	GCGC	3 cut(s)	32, 82, 228
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	30, 226, 670, 695
Hin6I	GCGC	3 cut(s)	30, 80, 226
HinP1I	GCGC	3 cut(s)	30, 80, 226
HincII	GTYRAC	2 cut(s)	15, 199
HindII	GTYRAC	2 cut(s)	15, 199
HinfI	GANTC	2 cut(s)	258, 369
HpaII	CCGG	2 cut(s)	95, 636
HphI	GGTGA	2 cut(s)	15, 443
Hpy166II	GTNNAC	4 cut(s)	15, 124, 199, 244
Hpy188I	TCNGA	4 cut(s)	297, 306, 322, 339
Hpy188III	TCNNGA	1 cut(s)	572
Hpy8I	GTNNAC	4 cut(s)	15, 124, 199, 244
Hpy99I	CGWCG	4 cut(s)	16, 19, 54, 743
HpyAV	CCTTC	1 cut(s)	668
HpyCH4III	ACNGT	1 cut(s)	474
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	172, 346, 653
HpyF3I	CTNAG	1 cut(s)	701
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	30, 226, 670, 695
HspAI	GCGC	3 cut(s)	30, 80, 226
Kzo9I	GATC	4 cut(s)	235, 301, 568, 757
LmnI	GCTCC	1 cut(s)	624
Lsp1109I	GCAGC	7 cut(s)	236, 373, 376, 400, 661, 715, 718
LweI	GCATC	3 cut(s)	14, 622, 640
MaeI	CTAG	1 cut(s)	723
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	4 cut(s)	237, 303, 570, 759
MboI	GATC	4 cut(s)	235, 301, 568, 757
MboII	GAAGA	1 cut(s)	471
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	696
MluCI	AATT	1 cut(s)	19
MluNI	TGGCCA	1 cut(s)	696
MlyI	GAGTC	2 cut(s)	267, 363
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	6 cut(s)	181, 208, 239, 281, 471, 487
Mox20I	TGGCCA	1 cut(s)	696
MscI	TGGCCA	1 cut(s)	696
MseI	TTAA	1 cut(s)	766
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	696
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	2 cut(s)	95, 636
Mva1269I	GAATGC	1 cut(s)	687
MvnI	CGCG	2 cut(s)	35, 234
NdeII	GATC	4 cut(s)	235, 301, 568, 757
NlaIII	CATG	4 cut(s)	30, 226, 670, 695
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	560
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	183
PctI	GAATGC	1 cut(s)	687
PflFI	GACNNNGTC	1 cut(s)	194
PleI	GAGTC	2 cut(s)	266, 363
PpsI	GAGTC	2 cut(s)	266, 363
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	2 cut(s)	97, 138
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	183
SalI	GTCGAC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	766
Sau3AI	GATC	4 cut(s)	235, 301, 568, 757
Sau96I	GGNCC	2 cut(s)	97, 138
SchI	GAGTC	2 cut(s)	267, 363
SetI	ASST	3 cut(s)	150, 311, 629
SfaNI	GCATC	3 cut(s)	14, 622, 640
SfcI	CTRYAG	1 cut(s)	678
SgrDI	CGTCGACG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	1 cut(s)	19
SspMI	CTAG	1 cut(s)	723
TaaI	ACNGT	1 cut(s)	474
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	14, 571
TasI	AATT	1 cut(s)	19
TauI	GCSGC	9 cut(s)	35, 106, 380, 383, 386, 395, 398, 401, 525
Tru1I	TTAA	1 cut(s)	766
Tru9I	TTAA	1 cut(s)	766
TscAI	CASTG	2 cut(s)	361, 415
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	7 cut(s)	249, 386, 389, 413, 674, 728, 731
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	680, 683
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	361, 415
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	226
XmiI	GTMKAC	2 cut(s)	14, 243
XspI	CTAG	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.