Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005316

Physical Location & Seq

Genomic Coordinates Forward (+)

71997387 .. 71998567

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0600700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAGGGTTTAGGAAGGAGTAAGGTTTTAAGGGCTCTGTTTGGAGCTCTTCTGCTTCTGGGTGTCTTATGGTTTTTATCTGCTGCAATTCTAGTGAACCACACTACCGAACCGACTGTTACAGTTTCATCCACCAGAGTCTTCAAGCATTGGAAGCTGACTGGAAGAGAGAAGAAGCATGCTGTTCTTTGGGATTCTTCTACCTTCATTTACGTGAGCAAGAGGCGAGTACCGAATGGACCTGATCCCATTCATAACAGGAGAGAAGTGAAGACTAGACAACCAGCTGGTCGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009799 GO:0009908 GO:0009943 GO:0009944 GO:0009954 GO:0009955 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0065001 GO:0070013 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

99

Amino Acids

11.17

Weight (kDa)

11.47

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65620 AT1G65620 AT1G65620 AT1G65620 AT1G65620
fragaria_vesca	FvH4_6g00042 FvH4_6g00042 FvH4_6g00042 FvH4_6g00042
malus_domestica	MD00G1016900.v1.1 MD12G1261100.v1.1
prunus_persica	Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1
pyrus_communis	pycom12g24260 pycom17g24020
rosa_chinensis	RchiOBHm_Chr3g0447371
rosa_laevigata	RLG00000026004
rosa_multiflora	Rmu_ssc0000473.1_g000010
rosa_roxburghii	Rroxscaffold_6G00425570
rosa_rugosa	Rorug02G0600700 Rorug02G0600800
rosa_samantha	Rh3AG001000 Rh3BG000700 Rh3CG000700 Rh3DG000900
rosa_wichuraiana	Rw3G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	239
AfaI	GTAC	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	4 cut(s)	47, 157, 287, 296
AluI	AGCT	4 cut(s)	47, 157, 287, 296
Alw21I	GWGCWC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	239
BanII	GRGCYC	2 cut(s)	37, 49
BbsI	GAAGAC	2 cut(s)	133, 278
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	92, 276
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BpiI	GAAGAC	2 cut(s)	133, 278
BsaAI	YACGTR	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	37, 49
Bsp143I	GATC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	118, 124
Bst6I	CTCTTC	2 cut(s)	54, 160
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	128
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 293
BstNSI	RCATGY	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	2 cut(s)	133, 278
BtsCI	GGATG	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	5 cut(s)	35, 47, 157, 287, 296
CviKI_1	RGCY	5 cut(s)	35, 47, 157, 287, 296
CviQI	GTAC	1 cut(s)	230
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	54, 160
EarI	CTCTTC	2 cut(s)	54, 160
Ecl136II	GAGCTC	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	37, 49
Eco47I	GGWCC	1 cut(s)	239
Eco53kI	GAGCTC	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	47
EcoT38I	GRGCYC	2 cut(s)	37, 49
FaeI	CATG	1 cut(s)	182
FaiI	YATR	3 cut(s)	70, 180, 255
FatI	CATG	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	2 cut(s)	37, 49
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	2 cut(s)	92, 276
GluI	GCNGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	182
HinfI	GANTC	2 cut(s)	138, 194
Hpy166II	GTNNAC	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	9, 214
HpyCH4III	ACNGT	2 cut(s)	118, 124
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 293
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	244
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	6 cut(s)	44, 147, 148, 244, 255, 273
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	92, 276
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	6 cut(s)	41, 133, 177, 184, 189, 283
MhlI	GDGCHC	2 cut(s)	37, 49
MluCI	AATT	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	1 cut(s)	216
MseI	TTAA	2 cut(s)	29, 298
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	154, 293
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	182
NspI	RCATGY	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	212
SacI	GAGCTC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	29, 298
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	37, 49
SetI	ASST	8 cut(s)	27, 49, 159, 206, 216, 244, 289, 298
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	212
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	1 cut(s)	87
SspMI	CTAG	2 cut(s)	92, 276
SstI	GAGCTC	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	118, 124
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	292
TasI	AATT	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	29, 298
Tru9I	TTAA	2 cut(s)	29, 298
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	3 cut(s)	117, 196, 242
VpaK11BI	GGWCC	1 cut(s)	239
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	2 cut(s)	92, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.