Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005316

Physical Location & Seq

Genomic Coordinates Forward (+)

46593277 .. 46594032

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCATCGTCGTCGTCAAATTCGCCGTGTGCAGCCTGTAAGTTTCTGCGTCGCAAGTGCCAGCCAGAGTGCGTATTTGCTCCGTACTTCCCACCGGACCAGCCCCAGAAGTTTGCAAATGTTCACAAAGTTTTTGGGGCGAGCAACGTGACCAAGCTGCTTAACGAGTTGCACCCCCACCAGCGTGAGGACGCCGTCAATTCTCTTGCCTACGAGGCTGACATGCGCCTCCGTGATCCCGTCTACGGTTGCGTCGGAGTCATCTCTCTTCTCCAACACCAACTCCGCCAGCTTCAGATGGATCTAACCTGCGCCAAATCTGAACTCTCGAAATACCAAAACCTCCAGGGAATCACTAGCCACGGACTTATAGCAGCCGCCGCCGCAGCCGCCGCCGCCAGCCACCACAGTAACAACATTCTTAATAATCAATATAACTTTTTGTCCTCGTCCCGGGAGAGGGAGAGAGACATCAATCTGATCTCTAGTACCACCACTGGCATTGGCATTGGCACCGGAGGGGGAGGAGGAGGAGGCCGCGGATCAGCAGACCAATATAATAGTATATCACACCACCAGTTCTTCCCCAGAGATCAGCAACAACAACAGATGATCAGGACATTTGATCAGGCGGCTGCGGGAAACATTAACTATGATGCAAGCAGCCTTTTGGCCATGAATGTCTCAGCCGGCATTCCATTTCAGCAACCTAGGGCTGCTGCTGGGGATGACCGCCGAACCATTGATCCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009799 GO:0009908 GO:0009943 GO:0009944 GO:0009954 GO:0009955 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0065001 GO:0070013 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

251

Amino Acids

27.21

Weight (kDa)

8.23

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	9 - 106	6e-43	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65620 AT1G65620 AT1G65620 AT1G65620 AT1G65620
fragaria_vesca	FvH4_6g00042 FvH4_6g00042 FvH4_6g00042 FvH4_6g00042
malus_domestica	MD00G1016900.v1.1 MD12G1261100.v1.1
prunus_persica	Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1
pyrus_communis	pycom12g24260 pycom17g24020
rosa_chinensis	RchiOBHm_Chr3g0447371
rosa_laevigata	RLG00000026004
rosa_multiflora	Rmu_ssc0000473.1_g000010
rosa_roxburghii	Rroxscaffold_6G00425570
rosa_rugosa	Rorug02G0600700 Rorug02G0600800
rosa_samantha	Rh3AG001000 Rh3BG000700 Rh3CG000700 Rh3DG000900
rosa_wichuraiana	Rw3G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	512
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	540
AclWI	GGATC	4 cut(s)	230, 309, 550, 740
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	86, 490
AfiI	CCNNNNNNNGG	5 cut(s)	187, 245, 453, 459, 460
AjnI	CCWGG	1 cut(s)	345
AleI	CACNNNNGTG	1 cut(s)	183
AloI	GAACNNNNNNTCC	1 cut(s)	730
AluBI	AGCT	2 cut(s)	157, 292
AluI	AGCT	2 cut(s)	157, 292
Alw26I	GTCTC	2 cut(s)	462, 688
AlwI	GGATC	4 cut(s)	230, 309, 550, 740
Ama87I	CYCGRG	1 cut(s)	453
AoxI	GGCC	2 cut(s)	535, 672
ApeKI	GCWGC	8 cut(s)	32, 157, 374, 386, 635, 663, 716, 719
ApoI	RAATTY	1 cut(s)	19
AspA2I	CCTAGG	1 cut(s)	710
AspLEI	GCGC	2 cut(s)	228, 314
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	2 cut(s)	454, 455
AvaI	CYCGRG	1 cut(s)	453
AvaII	GGWCC	1 cut(s)	97
AvrII	CCTAGG	1 cut(s)	710
BalI	TGGCCA	1 cut(s)	674
BanI	GGYRCC	1 cut(s)	512
BbvI	GCAGC	8 cut(s)	44, 144, 386, 398, 622, 675, 703, 706
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	2 cut(s)	10, 179
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	347
BclI	TGATCA	2 cut(s)	612, 625
BcnI	CCSGG	2 cut(s)	454, 455
BcoDI	GTCTC	2 cut(s)	462, 688
BfaI	CTAG	3 cut(s)	357, 486, 711
BfuAI	ACCTGC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	215
BlnI	CCTAGG	1 cut(s)	710
Bme1390I	CCNGG	3 cut(s)	347, 454, 455
Bme18I	GGWCC	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	3 cut(s)	347, 454, 455
BmsI	GCATC	2 cut(s)	14, 646
BpmI	CTGGAG	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	454, 455
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	5 cut(s)	346, 361, 453, 538, 710
BsaWI	WCCGGW	2 cut(s)	94, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	5 cut(s)	187, 245, 453, 459, 460
Bse118I	RCCGGY	1 cut(s)	689
Bse1I	ACTGG	2 cut(s)	502, 577
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	5 cut(s)	346, 361, 453, 538, 710
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	5 cut(s)	187, 245, 453, 459, 460
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	2 cut(s)	502, 577
BseRI	GAGGAG	3 cut(s)	540, 543, 546
BseXI	GCAGC	8 cut(s)	44, 144, 386, 398, 622, 675, 703, 706
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	540
BshFI	GGCC	2 cut(s)	537, 674
BshNI	GGYRCC	1 cut(s)	512
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	4 cut(s)	95, 454, 516, 690
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	5 cut(s)	187, 245, 453, 459, 460
BsmAI	GTCTC	2 cut(s)	462, 688
BsmFI	GGGAC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	2 cut(s)	537, 674
BsoBI	CYCGRG	1 cut(s)	453
Bsp143I	GATC	8 cut(s)	235, 301, 480, 542, 592, 612, 625, 745
BspANI	GGCC	2 cut(s)	537, 674
BspCNI	CTCAG	1 cut(s)	698
BspFNI	CGCG	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	4 cut(s)	230, 309, 550, 740
BspT107I	GGYRCC	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	689
BsrI	ACTGG	2 cut(s)	502, 577
BssAI	RCCGGY	1 cut(s)	689
BssECI	CCNNGG	5 cut(s)	346, 361, 453, 538, 710
BssMI	GATC	8 cut(s)	235, 301, 480, 542, 592, 612, 625, 745
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	710
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	248, 410
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	6 cut(s)	62, 142, 290, 400, 661, 691
BstDEI	CTNAG	2 cut(s)	685, 753
BstDSI	CCRYGG	2 cut(s)	361, 538
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	1 cut(s)	540
BstHHI	GCGC	2 cut(s)	228, 314
BstKTI	GATC	8 cut(s)	238, 304, 483, 545, 595, 615, 628, 748
BstMAI	GTCTC	2 cut(s)	462, 688
BstMBI	GATC	8 cut(s)	235, 301, 480, 542, 592, 612, 625, 745
BstMWI	GCNNNNNNNGC	7 cut(s)	215, 380, 383, 386, 389, 392, 395
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	3 cut(s)	345, 452, 453
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	8 cut(s)	44, 144, 386, 398, 622, 675, 703, 706
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	537, 674
BtgI	CCRYGG	2 cut(s)	361, 538
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	1 cut(s)	495
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	6 cut(s)	62, 142, 290, 400, 661, 691
CfoI	GCGC	2 cut(s)	228, 314
Cfr10I	RCCGGY	1 cut(s)	689
Cfr13I	GGNCC	1 cut(s)	97
Cfr42I	CCGCGG	1 cut(s)	541
Cfr9I	CCCGGG	1 cut(s)	453
CseI	GACGC	3 cut(s)	38, 200, 241
Csp6I	GTAC	2 cut(s)	85, 489
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	2 cut(s)	223, 676
CviQI	GTAC	2 cut(s)	85, 489
DdeI	CTNAG	2 cut(s)	685, 753
DpnI	GATC	8 cut(s)	237, 303, 482, 544, 594, 614, 627, 747
DpnII	GATC	8 cut(s)	235, 301, 480, 542, 592, 612, 625, 745
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	710
ErhI	CCWWGG	1 cut(s)	710
FaeI	CATG	2 cut(s)	226, 679
FaiI	YATR	7 cut(s)	224, 371, 435, 558, 566, 654, 677
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	2 cut(s)	222, 675
FauI	CCCGC	1 cut(s)	631
FbaI	TGATCA	2 cut(s)	612, 625
FblI	GTMKAC	1 cut(s)	243
FokI	GGATG	1 cut(s)	740
FspBI	CTAG	3 cut(s)	357, 486, 711
GlaI	GCGC	2 cut(s)	227, 313
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	537, 674
HapII	CCGG	4 cut(s)	95, 454, 516, 690
HgaI	GACGC	3 cut(s)	38, 200, 241
HhaI	GCGC	2 cut(s)	228, 314
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	226, 679
Hin6I	GCGC	2 cut(s)	226, 312
HinP1I	GCGC	2 cut(s)	226, 312
HinfI	GANTC	2 cut(s)	258, 351
HpaII	CCGG	4 cut(s)	95, 454, 516, 690
Hpy166II	GTNNAC	2 cut(s)	124, 244
Hpy188I	TCNGA	4 cut(s)	257, 297, 322, 480
Hpy188III	TCNNGA	2 cut(s)	328, 616
Hpy8I	GTNNAC	2 cut(s)	124, 244
Hpy99I	CGWCG	4 cut(s)	13, 16, 54, 257
HpyCH4III	ACNGT	2 cut(s)	248, 410
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	4 cut(s)	32, 116, 172, 659
HpyF10VI	GCNNNNNNNGC	7 cut(s)	215, 380, 383, 386, 389, 392, 395
HpyF3I	CTNAG	2 cut(s)	685, 753
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	226, 679
HspAI	GCGC	2 cut(s)	226, 312
KroI	GCCGGC	1 cut(s)	689
KroNI	GCCGGC	1 cut(s)	691
Ksp22I	TGATCA	2 cut(s)	612, 625
KspI	CCGCGG	1 cut(s)	541
Kzo9I	GATC	8 cut(s)	235, 301, 480, 542, 592, 612, 625, 745
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	8 cut(s)	44, 144, 386, 398, 622, 675, 703, 706
LweI	GCATC	2 cut(s)	14, 646
MaeI	CTAG	3 cut(s)	357, 486, 711
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	148, 410
MalI	GATC	8 cut(s)	237, 303, 482, 544, 594, 614, 627, 747
MboI	GATC	8 cut(s)	235, 301, 480, 542, 592, 612, 625, 745
MboII	GAAGA	2 cut(s)	260, 574
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	2 cut(s)	19, 199
MluNI	TGGCCA	1 cut(s)	674
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	2 cut(s)	235, 298
Mox20I	TGGCCA	1 cut(s)	674
MroNI	GCCGGC	1 cut(s)	689
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	3 cut(s)	162, 423, 648
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	540
MspI	CCGG	4 cut(s)	95, 454, 516, 690
MspR9I	CCNGG	3 cut(s)	347, 454, 455
Mva1269I	GAATGC	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	7 cut(s)	215, 380, 383, 386, 389, 392, 395
NaeI	GCCGGC	1 cut(s)	691
NciI	CCSGG	2 cut(s)	454, 455
NdeII	GATC	8 cut(s)	235, 301, 480, 542, 592, 612, 625, 745
NgoMIV	GCCGGC	1 cut(s)	689
NlaIII	CATG	2 cut(s)	226, 679
NlaIV	GGNNCC	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	183
PctI	GAATGC	1 cut(s)	693
PdiI	GCCGGC	1 cut(s)	691
PfeI	GAWTC	1 cut(s)	351
PflFI	GACNNNGTC	1 cut(s)	194
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	2 cut(s)	86, 490
RsaNI	GTAC	2 cut(s)	85, 489
RseI	CAYNNNNRTG	1 cut(s)	183
SacII	CCGCGG	1 cut(s)	541
SaqAI	TTAA	3 cut(s)	162, 423, 648
Sau3AI	GATC	8 cut(s)	235, 301, 480, 542, 592, 612, 625, 745
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	3 cut(s)	347, 454, 455
SetI	ASST	6 cut(s)	150, 159, 294, 311, 345, 712
SfaNI	GCATC	2 cut(s)	14, 646
Sfr303I	CCGCGG	1 cut(s)	541
SgrBI	CCGCGG	1 cut(s)	541
SinI	GGWCC	1 cut(s)	97
SmaI	CCCGGG	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	2 cut(s)	19, 199
SspMI	CTAG	3 cut(s)	357, 486, 711
StyD4I	CCNGG	3 cut(s)	345, 452, 453
StyI	CCWWGG	1 cut(s)	710
TaaI	ACNGT	2 cut(s)	248, 410
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	329
TasI	AATT	2 cut(s)	19, 199
TauI	GCSGC	8 cut(s)	380, 383, 386, 392, 395, 398, 540, 635
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	3 cut(s)	162, 423, 648
Tru9I	TTAA	3 cut(s)	162, 423, 648
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	8 cut(s)	32, 157, 374, 386, 635, 663, 716, 719
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	692
TspGWI	ACGGA	3 cut(s)	72, 221, 378
TspMI	CCCGGG	1 cut(s)	453
TspRI	CASTG	1 cut(s)	502
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	226
XmaI	CCCGGG	1 cut(s)	453
XmaJI	CCTAGG	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	3 cut(s)	357, 486, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.