Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005316

Physical Location & Seq

Genomic Coordinates Forward (+)

53201 .. 56136

Gene Structure 2936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00042.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCGTCGTCGTCGTCAAATTCGCCTTGCGCAGCATGTAAGTTCCTGCGTCGCAAGTGCCAGCCAGAGTGCGTATTTGCTCCGTACTTCCCACCGGACCAGCCCCAGAAGTTTGCAAATGTTCACAAAGTTTTTGGGGCGAGCAACGTGACCAAGCTGCTGAACGAGTTGCACCCCCATCAGCGTGAGGACGCCGTCAACTCTCTTGCCTACGAGGCTGACATGCGCCTCCGCGATCCCGTCTACGGTTGCGTTGGAGTCATCTCTCTCCTCCAACACCAACTCCGCCAGCTTCAGATGGATCTAACCTGCGCCAAATCTGAGCTCTCCAAATACCAAAACCTCCAGGGAATCACTAGCCACGGACTCATAGCCGCCGCTGCCGCCGCTGCCGCAGCCACTGCCACCACCCACCATAGTAACAACATTCTTAGTAATCAATATAACTTTTTGTCCTCCTCCCGGGAGAGGGAGAGAGAGATCAATCTCATCTCTAGTACCACCACTGGCATTGGCACCGGAGGAGGCCGCGGATCAGCAGAGCAATATAATAGTATATCACACCACCAGTTCTTCCCCAGAGATCAGCAGCAACAACAGATGATCAGGACATTTGACCAGGCGGCTGTGGGAAACATTAACTATGATGCAAGCAACCTTTTGGCCATGAACGTTTCAGCCGGAATTCCGTTTCAGCAACCTAGGGCTGCTGCTGGGGATGACCGCCGGACCATTGATCCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009799 GO:0009908 GO:0009943 GO:0009944 GO:0009954 GO:0009955 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0065001 GO:0070013 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

249

Amino Acids

27.15

Weight (kDa)

8.23

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	9 - 106	5.8e-43	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65620 AT1G65620 AT1G65620 AT1G65620 AT1G65620
fragaria_vesca	FvH4_6g00042 FvH4_6g00042 FvH4_6g00042 FvH4_6g00042
malus_domestica	MD00G1016900.v1.1 MD12G1261100.v1.1
prunus_persica	Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1
pyrus_communis	pycom12g24260 pycom17g24020
rosa_chinensis	RchiOBHm_Chr3g0447371
rosa_laevigata	RLG00000026004
rosa_multiflora	Rmu_ssc0000473.1_g000010
rosa_roxburghii	Rroxscaffold_6G00425570
rosa_rugosa	Rorug02G0600700 Rorug02G0600800
rosa_samantha	Rh3AG001000 Rh3BG000700 Rh3CG000700 Rh3DG000900
rosa_wichuraiana	Rw3G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	31
Acc36I	ACCTGC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	2 cut(s)	234, 531
AclI	AACGTT	1 cut(s)	672
AclWI	GGATC	4 cut(s)	230, 309, 541, 731
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	2 cut(s)	19, 684
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	2 cut(s)	5, 192
AfaI	GTAC	2 cut(s)	86, 499
AfiI	CCNNNNNNNGG	4 cut(s)	245, 462, 468, 469
AjnI	CCWGG	2 cut(s)	345, 618
AluBI	AGCT	3 cut(s)	157, 292, 325
AluI	AGCT	3 cut(s)	157, 292, 325
Alw21I	GWGCWC	1 cut(s)	327
AlwI	GGATC	4 cut(s)	230, 309, 541, 731
AlwNI	CAGNNNCTG	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	462
AoxI	GGCC	2 cut(s)	526, 663
ApeKI	GCWGC	8 cut(s)	32, 157, 380, 389, 395, 589, 707, 710
ApoI	RAATTY	2 cut(s)	19, 684
AspA2I	CCTAGG	1 cut(s)	701
AspLEI	GCGC	3 cut(s)	32, 228, 314
AspS9I	GGNCC	2 cut(s)	97, 729
AsuC2I	CCSGG	2 cut(s)	463, 464
AvaI	CYCGRG	1 cut(s)	462
AvaII	GGWCC	2 cut(s)	97, 729
AvrII	CCTAGG	1 cut(s)	701
BalI	TGGCCA	1 cut(s)	665
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	8 cut(s)	44, 144, 367, 376, 407, 601, 694, 697
BccI	CCATC	2 cut(s)	186, 292
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	2 cut(s)	347, 620
BclI	TGATCA	1 cut(s)	603
BcnI	CCSGG	2 cut(s)	463, 464
BfaI	CTAG	3 cut(s)	357, 495, 702
BfuAI	ACCTGC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	215
BlnI	CCTAGG	1 cut(s)	701
Bme1390I	CCNGG	4 cut(s)	347, 463, 464, 620
Bme18I	GGWCC	2 cut(s)	97, 729
BmeT110I	CYCGRG	1 cut(s)	462
BmgT120I	GGNCC	2 cut(s)	97, 729
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	4 cut(s)	347, 463, 464, 620
BmsI	GCATC	1 cut(s)	637
BpmI	CTGGAG	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	463, 464
BsaHI	GRCGYC	2 cut(s)	5, 192
BsaJI	CCNNGG	5 cut(s)	346, 361, 462, 529, 701
BsaWI	WCCGGW	2 cut(s)	94, 518
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 462, 468, 469
Bse1I	ACTGG	2 cut(s)	511, 568
BseBI	CCWGG	2 cut(s)	347, 620
BseDI	CCNNGG	5 cut(s)	346, 361, 462, 529, 701
BseGI	GGATG	1 cut(s)	724
BseLI	CCNNNNNNNGG	4 cut(s)	245, 462, 468, 469
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	511, 568
BseRI	GAGGAG	3 cut(s)	260, 448, 537
BseXI	GCAGC	8 cut(s)	44, 144, 367, 376, 407, 601, 694, 697
BseYI	CCCAGC	1 cut(s)	713
Bsh1236I	CGCG	2 cut(s)	234, 531
BshFI	GGCC	2 cut(s)	528, 665
BshNI	GGYRCC	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	462
BsiSI	CCGG	5 cut(s)	95, 463, 519, 681, 727
BslI	CCNNNNNNNGG	4 cut(s)	245, 462, 468, 469
BsnI	GGCC	2 cut(s)	528, 665
BsoBI	CYCGRG	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	7 cut(s)	235, 301, 480, 533, 583, 603, 736
BspANI	GGCC	2 cut(s)	528, 665
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	2 cut(s)	234, 531
BspLI	GGNNCC	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	4 cut(s)	230, 309, 541, 731
BspT107I	GGYRCC	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	511, 568
BssECI	CCNNGG	5 cut(s)	346, 361, 462, 529, 701
BssMI	GATC	7 cut(s)	235, 301, 480, 533, 583, 603, 736
BssNI	GRCGYC	2 cut(s)	5, 192
BssT1I	CCWWGG	1 cut(s)	701
Bst2UI	CCWGG	2 cut(s)	347, 620
Bst4CI	ACNGT	1 cut(s)	248
BstACI	GRCGYC	2 cut(s)	5, 192
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	4 cut(s)	62, 142, 290, 652
BstDEI	CTNAG	3 cut(s)	321, 431, 744
BstDSI	CCRYGG	2 cut(s)	361, 529
BstF5I	GGATG	1 cut(s)	724
BstFNI	CGCG	2 cut(s)	234, 531
BstHHI	GCGC	3 cut(s)	32, 228, 314
BstKTI	GATC	7 cut(s)	238, 304, 483, 536, 586, 606, 739
BstMBI	GATC	7 cut(s)	235, 301, 480, 533, 583, 603, 736
BstMWI	GCNNNNNNNGC	8 cut(s)	215, 380, 383, 386, 389, 392, 395, 401
BstNI	CCWGG	2 cut(s)	347, 620
BstNSI	RCATGY	2 cut(s)	39, 226
BstSCI	CCNGG	4 cut(s)	345, 461, 462, 618
BstUI	CGCG	2 cut(s)	234, 531
BstV1I	GCAGC	8 cut(s)	44, 144, 367, 376, 407, 601, 694, 697
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	528, 665
BtgI	CCRYGG	2 cut(s)	361, 529
BtsCI	GGATG	1 cut(s)	724
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 504
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	4 cut(s)	62, 142, 290, 652
CaiI	CAGNNNCTG	1 cut(s)	401
CfoI	GCGC	3 cut(s)	32, 228, 314
Cfr13I	GGNCC	2 cut(s)	97, 729
Cfr42I	CCGCGG	1 cut(s)	532
Cfr9I	CCCGGG	1 cut(s)	462
CseI	GACGC	2 cut(s)	38, 200
Csp6I	GTAC	2 cut(s)	85, 498
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	3 cut(s)	36, 223, 667
CviQI	GTAC	2 cut(s)	85, 498
DdeI	CTNAG	3 cut(s)	321, 431, 744
DpnI	GATC	7 cut(s)	237, 303, 482, 535, 585, 605, 738
DpnII	GATC	7 cut(s)	235, 301, 480, 533, 583, 603, 736
EaeI	YGGCCR	1 cut(s)	663
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	701
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	97, 729
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	684
EcoRII	CCWGG	2 cut(s)	345, 618
EcoT14I	CCWWGG	1 cut(s)	701
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	701
FaeI	CATG	3 cut(s)	39, 226, 670
FaiI	YATR	9 cut(s)	37, 224, 371, 417, 444, 549, 557, 645, 668
FatI	CATG	3 cut(s)	35, 222, 666
FbaI	TGATCA	1 cut(s)	603
FblI	GTMKAC	1 cut(s)	243
FokI	GGATG	1 cut(s)	731
FriOI	GRGCYC	1 cut(s)	327
FspBI	CTAG	3 cut(s)	357, 495, 702
FspI	TGCGCA	1 cut(s)	31
GlaI	GCGC	3 cut(s)	31, 227, 313
GsaI	CCCAGC	1 cut(s)	717
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	528, 665
HapII	CCGG	5 cut(s)	95, 463, 519, 681, 727
HgaI	GACGC	2 cut(s)	38, 200
HhaI	GCGC	3 cut(s)	32, 228, 314
Hin1I	GRCGYC	2 cut(s)	5, 192
Hin1II	CATG	3 cut(s)	39, 226, 670
Hin6I	GCGC	3 cut(s)	30, 226, 312
HinP1I	GCGC	3 cut(s)	30, 226, 312
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	3 cut(s)	258, 351, 366
HpaII	CCGG	5 cut(s)	95, 463, 519, 681, 727
Hpy166II	GTNNAC	3 cut(s)	124, 199, 244
Hpy188I	TCNGA	2 cut(s)	297, 322
Hpy188III	TCNNGA	1 cut(s)	607
Hpy8I	GTNNAC	3 cut(s)	124, 199, 244
Hpy99I	CGWCG	4 cut(s)	10, 13, 16, 54
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	2 cut(s)	147, 672
HpyCH4V	TGCA	3 cut(s)	116, 172, 650
HpyF10VI	GCNNNNNNNGC	8 cut(s)	215, 380, 383, 386, 389, 392, 395, 401
HpyF3I	CTNAG	3 cut(s)	321, 431, 744
HpySE526I	ACGT	2 cut(s)	147, 672
Hsp92I	GRCGYC	2 cut(s)	5, 192
Hsp92II	CATG	3 cut(s)	39, 226, 670
HspAI	GCGC	3 cut(s)	30, 226, 312
Ksp22I	TGATCA	1 cut(s)	603
KspI	CCGCGG	1 cut(s)	532
Kzo9I	GATC	7 cut(s)	235, 301, 480, 533, 583, 603, 736
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	8 cut(s)	44, 144, 367, 376, 407, 601, 694, 697
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	3 cut(s)	357, 495, 702
MaeII	ACGT	2 cut(s)	147, 672
MaeIII	GTNAC	2 cut(s)	148, 419
MalI	GATC	7 cut(s)	237, 303, 482, 535, 585, 605, 738
MboI	GATC	7 cut(s)	235, 301, 480, 533, 583, 603, 736
MboII	GAAGA	1 cut(s)	565
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	2 cut(s)	19, 684
MluNI	TGGCCA	1 cut(s)	665
MlyI	GAGTC	2 cut(s)	267, 360
MmeI	TCCRAC	2 cut(s)	235, 298
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	1 cut(s)	639
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	3 cut(s)	380, 389, 531
MspI	CCGG	5 cut(s)	95, 463, 519, 681, 727
MspR9I	CCNGG	4 cut(s)	347, 463, 464, 620
MvaI	CCWGG	2 cut(s)	347, 620
MvnI	CGCG	2 cut(s)	234, 531
MwoI	GCNNNNNNNGC	8 cut(s)	215, 380, 383, 386, 389, 392, 395, 401
NciI	CCSGG	2 cut(s)	463, 464
NdeII	GATC	7 cut(s)	235, 301, 480, 533, 583, 603, 736
NlaIII	CATG	3 cut(s)	39, 226, 670
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	148
NsbI	TGCGCA	1 cut(s)	31
NspI	RCATGY	2 cut(s)	39, 226
PfeI	GAWTC	1 cut(s)	351
PflFI	GACNNNGTC	1 cut(s)	194
PleI	GAGTC	2 cut(s)	266, 360
PpsI	GAGTC	2 cut(s)	266, 360
Psp124BI	GAGCTC	1 cut(s)	327
Psp1406I	AACGTT	1 cut(s)	672
Psp6I	CCWGG	2 cut(s)	345, 618
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	2 cut(s)	345, 618
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	2 cut(s)	97, 729
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	2 cut(s)	86, 499
RsaNI	GTAC	2 cut(s)	85, 498
RseI	CAYNNNNRTG	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	327
SacII	CCGCGG	1 cut(s)	532
SaqAI	TTAA	1 cut(s)	639
Sau3AI	GATC	7 cut(s)	235, 301, 480, 533, 583, 603, 736
Sau96I	GGNCC	2 cut(s)	97, 729
SchI	GAGTC	2 cut(s)	267, 360
ScrFI	CCNGG	4 cut(s)	347, 463, 464, 620
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	9 cut(s)	150, 159, 294, 311, 327, 345, 660, 675, 703
SfaNI	GCATC	1 cut(s)	637
Sfr303I	CCGCGG	1 cut(s)	532
SgrBI	CCGCGG	1 cut(s)	532
SinI	GGWCC	2 cut(s)	97, 729
SmaI	CCCGGG	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	2 cut(s)	19, 684
SspMI	CTAG	3 cut(s)	357, 495, 702
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	4 cut(s)	345, 461, 462, 618
StyI	CCWWGG	1 cut(s)	701
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	2 cut(s)	150, 675
TasI	AATT	2 cut(s)	19, 684
TauI	GCSGC	7 cut(s)	377, 380, 386, 389, 395, 531, 626
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	2 cut(s)	406, 511
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	8 cut(s)	32, 157, 380, 389, 395, 589, 707, 710
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	683
TspGWI	ACGGA	3 cut(s)	72, 378, 678
TspMI	CCCGGG	1 cut(s)	462
TspRI	CASTG	2 cut(s)	406, 511
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	97, 729
XapI	RAATTY	2 cut(s)	19, 684
XceI	RCATGY	2 cut(s)	39, 226
XmaI	CCCGGG	1 cut(s)	462
XmaJI	CCTAGG	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	3 cut(s)	357, 495, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.