Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005316

Physical Location & Seq

Genomic Coordinates Forward (+)

110278 .. 113096

Gene Structure 2819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG000700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCATCGTCGTCGTCAAATTCGCCGTGTGCAGCCTGTAAGTTTCTGCGTCGCAAGTGCCAGCCAGAGTGCGTATTTGCTCCATACTTCCCACCGGACCAGCCCCAGAAGTTTGCAAATGTTCACAAAGTTTTTGGGGCGAGCAACGTGACCAAGCTGCTTAACGAGTTGCACCCCCACCAGCGTGAGGACGCCGTCAATTCTCTTGCCTACGAGGCTGACATGCGCCTCCGTGATCCCGTCTACGGTTGCGTCGGAGTCATCTCTCTTCTCCAACACCAACTCCGCCAGCTTCAGATAGATCTAACCTGCGCCAAATCTGAACTCTCGAAATACCAAAACCTCCAGGGAATCACTAGCCACGGACTTATAGCCGCCGCCGCCGCCGCCGCCGCCAGCCACCACAGTAACAACATTCTTAATAATCAATATAACTTTTTGTCCTCGTCTCGGGAGAGGGAGAGAGACATCAATCTGATCTCTAGTACCACCACTGGCATTGGCACCGGAGGGGGAGGAGGAGGCCGCGGATCAGCAGACCAATATAATAGTATATCACACCACCAGTTCTTCCCCAGAGATCAGCAACAACAACAGATGATCAGGACATTTGATCAGGCGTCTGCGGGAAACATTAACTATGATGCAAGCAGCCTTTTGGCCATGAACGTCTCAGCCGGCATTCCATTTCATCAACCTAGGGCTGCTGCTGGGGATGACCGCCGAACCATTGATCCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009799 GO:0009908 GO:0009943 GO:0009944 GO:0009954 GO:0009955 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0065001 GO:0070013 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

247

Amino Acids

26.92

Weight (kDa)

8.23

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	9 - 105	1.1e-42	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65620 AT1G65620 AT1G65620 AT1G65620 AT1G65620
fragaria_vesca	FvH4_6g00042 FvH4_6g00042 FvH4_6g00042 FvH4_6g00042
malus_domestica	MD00G1016900.v1.1 MD12G1261100.v1.1
prunus_persica	Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1
pyrus_communis	pycom12g24260 pycom17g24020
rosa_chinensis	RchiOBHm_Chr3g0447371
rosa_laevigata	RLG00000026004
rosa_multiflora	Rmu_ssc0000473.1_g000010
rosa_roxburghii	Rroxscaffold_6G00425570
rosa_rugosa	Rorug02G0600700 Rorug02G0600800
rosa_samantha	Rh3AG001000 Rh3BG000700 Rh3CG000700 Rh3DG000900
rosa_wichuraiana	Rw3G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	528
AclWI	GGATC	3 cut(s)	230, 538, 728
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	2 cut(s)	192, 620
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	3 cut(s)	187, 245, 450
AjnI	CCWGG	1 cut(s)	345
AleI	CACNNNNGTG	1 cut(s)	183
AloI	GAACNNNNNNTCC	1 cut(s)	718
AluBI	AGCT	2 cut(s)	157, 292
AluI	AGCT	2 cut(s)	157, 292
Alw26I	GTCTC	3 cut(s)	453, 459, 676
AlwI	GGATC	3 cut(s)	230, 538, 728
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	2 cut(s)	523, 660
ApeKI	GCWGC	5 cut(s)	32, 157, 651, 704, 707
ApoI	RAATTY	1 cut(s)	19
AspA2I	CCTAGG	1 cut(s)	698
AspLEI	GCGC	2 cut(s)	228, 314
AspS9I	GGNCC	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	97
AvrII	CCTAGG	1 cut(s)	698
BalI	TGGCCA	1 cut(s)	662
BanI	GGYRCC	1 cut(s)	503
BbvI	GCAGC	5 cut(s)	44, 144, 663, 691, 694
BceAI	ACGGC	2 cut(s)	10, 179
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	347
BclI	TGATCA	2 cut(s)	600, 613
BcoDI	GTCTC	3 cut(s)	453, 459, 676
BfaI	CTAG	3 cut(s)	357, 483, 699
BfuAI	ACCTGC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	215
BglII	AGATCT	1 cut(s)	301
BlnI	CCTAGG	1 cut(s)	698
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	2 cut(s)	14, 634
BpmI	CTGGAG	1 cut(s)	329
BsaHI	GRCGYC	2 cut(s)	192, 620
BsaJI	CCNNGG	4 cut(s)	346, 361, 526, 698
BsaWI	WCCGGW	2 cut(s)	94, 506
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 245, 450
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	2 cut(s)	499, 565
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	4 cut(s)	346, 361, 526, 698
BseGI	GGATG	1 cut(s)	721
BseLI	CCNNNNNNNGG	3 cut(s)	187, 245, 450
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	2 cut(s)	499, 565
BseRI	GAGGAG	2 cut(s)	531, 534
BseXI	GCAGC	5 cut(s)	44, 144, 663, 691, 694
BseYI	CCCAGC	1 cut(s)	710
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	2 cut(s)	525, 662
BshNI	GGYRCC	1 cut(s)	503
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	3 cut(s)	95, 507, 678
BslI	CCNNNNNNNGG	3 cut(s)	187, 245, 450
BsmAI	GTCTC	3 cut(s)	453, 459, 676
BsmBI	CGTCTC	2 cut(s)	453, 676
BsmI	GAATGC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	525, 662
BsoBI	CYCGRG	1 cut(s)	450
Bsp143I	GATC	8 cut(s)	235, 301, 477, 530, 580, 600, 613, 733
BspANI	GGCC	2 cut(s)	525, 662
BspCNI	CTCAG	1 cut(s)	686
BspFNI	CGCG	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	3 cut(s)	230, 538, 728
BspT107I	GGYRCC	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	2 cut(s)	499, 565
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	4 cut(s)	346, 361, 526, 698
BssMI	GATC	8 cut(s)	235, 301, 477, 530, 580, 600, 613, 733
BssNI	GRCGYC	2 cut(s)	192, 620
BssT1I	CCWWGG	1 cut(s)	698
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	248, 407
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	2 cut(s)	192, 620
BstC8I	GCNNGC	6 cut(s)	62, 142, 290, 397, 649, 679
BstDEI	CTNAG	2 cut(s)	673, 741
BstDSI	CCRYGG	2 cut(s)	361, 526
BstF5I	GGATG	1 cut(s)	721
BstFNI	CGCG	1 cut(s)	528
BstHHI	GCGC	2 cut(s)	228, 314
BstKTI	GATC	8 cut(s)	238, 304, 480, 533, 583, 603, 616, 736
BstMAI	GTCTC	3 cut(s)	453, 459, 676
BstMBI	GATC	8 cut(s)	235, 301, 477, 530, 580, 600, 613, 733
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 380, 383, 386, 389, 392
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	5 cut(s)	44, 144, 663, 691, 694
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	525, 662
BtgI	CCRYGG	2 cut(s)	361, 526
BtsCI	GGATG	1 cut(s)	721
BtsIMutI	CAGTG	1 cut(s)	492
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	6 cut(s)	62, 142, 290, 397, 649, 679
CfoI	GCGC	2 cut(s)	228, 314
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	1 cut(s)	97
Cfr42I	CCGCGG	1 cut(s)	529
CseI	GACGC	4 cut(s)	38, 200, 241, 609
Csp6I	GTAC	1 cut(s)	486
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	2 cut(s)	223, 664
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	2 cut(s)	673, 741
DpnI	GATC	8 cut(s)	237, 303, 479, 532, 582, 602, 615, 735
DpnII	GATC	8 cut(s)	235, 301, 477, 530, 580, 600, 613, 733
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	698
ErhI	CCWWGG	1 cut(s)	698
Esp3I	CGTCTC	2 cut(s)	453, 676
FaeI	CATG	2 cut(s)	226, 667
FaiI	YATR	8 cut(s)	85, 224, 371, 432, 546, 554, 642, 665
FatI	CATG	2 cut(s)	222, 663
FauI	CCCGC	1 cut(s)	619
FbaI	TGATCA	2 cut(s)	600, 613
FblI	GTMKAC	1 cut(s)	243
FokI	GGATG	1 cut(s)	728
FspBI	CTAG	3 cut(s)	357, 483, 699
GlaI	GCGC	2 cut(s)	227, 313
GsaI	CCCAGC	1 cut(s)	714
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	525, 662
HapII	CCGG	3 cut(s)	95, 507, 678
HgaI	GACGC	4 cut(s)	38, 200, 241, 609
HhaI	GCGC	2 cut(s)	228, 314
Hin1I	GRCGYC	2 cut(s)	192, 620
Hin1II	CATG	2 cut(s)	226, 667
Hin6I	GCGC	2 cut(s)	226, 312
HinP1I	GCGC	2 cut(s)	226, 312
HinfI	GANTC	2 cut(s)	258, 351
HpaII	CCGG	3 cut(s)	95, 507, 678
Hpy166II	GTNNAC	2 cut(s)	124, 244
Hpy188I	TCNGA	4 cut(s)	257, 297, 322, 477
Hpy188III	TCNNGA	3 cut(s)	328, 452, 604
Hpy8I	GTNNAC	2 cut(s)	124, 244
Hpy99I	CGWCG	4 cut(s)	13, 16, 54, 257
HpyCH4III	ACNGT	2 cut(s)	248, 407
HpyCH4IV	ACGT	2 cut(s)	147, 669
HpyCH4V	TGCA	4 cut(s)	32, 116, 172, 647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 380, 383, 386, 389, 392
HpyF3I	CTNAG	2 cut(s)	673, 741
HpySE526I	ACGT	2 cut(s)	147, 669
Hsp92I	GRCGYC	2 cut(s)	192, 620
Hsp92II	CATG	2 cut(s)	226, 667
HspAI	GCGC	2 cut(s)	226, 312
KroI	GCCGGC	1 cut(s)	677
KroNI	GCCGGC	1 cut(s)	679
Ksp22I	TGATCA	2 cut(s)	600, 613
KspI	CCGCGG	1 cut(s)	529
Kzo9I	GATC	8 cut(s)	235, 301, 477, 530, 580, 600, 613, 733
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	5 cut(s)	44, 144, 663, 691, 694
LweI	GCATC	2 cut(s)	14, 634
MaeI	CTAG	3 cut(s)	357, 483, 699
MaeII	ACGT	2 cut(s)	147, 669
MaeIII	GTNAC	2 cut(s)	148, 407
MalI	GATC	8 cut(s)	237, 303, 479, 532, 582, 602, 615, 735
MboI	GATC	8 cut(s)	235, 301, 477, 530, 580, 600, 613, 733
MboII	GAAGA	2 cut(s)	260, 562
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	662
MluCI	AATT	2 cut(s)	19, 199
MluNI	TGGCCA	1 cut(s)	662
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	2 cut(s)	235, 298
Mox20I	TGGCCA	1 cut(s)	662
MroNI	GCCGGC	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	662
MseI	TTAA	3 cut(s)	162, 420, 636
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	528
MspI	CCGG	3 cut(s)	95, 507, 678
MspR9I	CCNGG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	6 cut(s)	215, 380, 383, 386, 389, 392
NaeI	GCCGGC	1 cut(s)	679
NdeII	GATC	8 cut(s)	235, 301, 477, 530, 580, 600, 613, 733
NgoMIV	GCCGGC	1 cut(s)	677
NlaIII	CATG	2 cut(s)	226, 667
NlaIV	GGNNCC	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	183
PctI	GAATGC	1 cut(s)	681
PdiI	GCCGGC	1 cut(s)	679
PfeI	GAWTC	1 cut(s)	351
PflFI	GACNNNGTC	1 cut(s)	194
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	505
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	1 cut(s)	183
SacII	CCGCGG	1 cut(s)	529
SaqAI	TTAA	3 cut(s)	162, 420, 636
Sau3AI	GATC	8 cut(s)	235, 301, 477, 530, 580, 600, 613, 733
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	7 cut(s)	150, 159, 294, 311, 345, 672, 700
SfaNI	GCATC	2 cut(s)	14, 634
Sfr303I	CCGCGG	1 cut(s)	529
SgrBI	CCGCGG	1 cut(s)	529
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	2 cut(s)	19, 199
SspMI	CTAG	3 cut(s)	357, 483, 699
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	698
TaaI	ACNGT	2 cut(s)	248, 407
TaiI	ACGT	2 cut(s)	150, 672
TaqI	TCGA	1 cut(s)	329
TasI	AATT	2 cut(s)	19, 199
TauI	GCSGC	8 cut(s)	377, 380, 383, 386, 389, 392, 395, 528
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	3 cut(s)	162, 420, 636
Tru9I	TTAA	3 cut(s)	162, 420, 636
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	5 cut(s)	32, 157, 651, 704, 707
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	680, 680
TspGWI	ACGGA	2 cut(s)	221, 378
TspRI	CASTG	1 cut(s)	499
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	226
XmaJI	CCTAGG	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	3 cut(s)	357, 483, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.