Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005316

Physical Location & Seq

Genomic Coordinates Reverse (-)

30684692 .. 30688679

Gene Structure 3988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G365600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATGGCATCATCATCGTCGTCGTCGAATTCGCCATGCGCGGCGTGCAAATTCCTGCGACGCAAGTGCCAGCCAGAGTGTGTATTTGCACCCTACTTCCCACCGGACCAGCCGCAGAAGTTTGCAAACGTTCACAAAGTGTTCGGGGCAAGCAACGTCACCAAATTGCTTAACGAGTTGCACCCCCACCAGCGTGAGGACGCCGTCAACTCTCTTGCCTACGAGGCTGACATGCGCCTCCGCGATCCCGTCTACGGCTGCGTTGGAGTCATCTCTCTCCTCCAACACCAACTCCGCCAGCTTCAGATGGATCTTACCTGTGCCAAATCCGAACTCTCCAAATATCAGAACCTGCAGCACGGCCTCACTGCCAGCCACGGTCTCATAGCCGCCGCCGCCGCTGCTGCCGCTGCCCACACCCACCACCCTCTTCATTTACAGTCCTCCTCCTCCACCTTACACAACAACAACAACAACTTGGGGATGGGAATCAATCTCATTTCAGGCGGCGGCGGAGGCCGAGATCACTACCCCCACCAGTTTTTCCCTAGAGATCGAGACCATCAACATCAGCAACAGATGATGATCAGGAGTTTTGATGCCGGAAACAACTACGATGCAAGCCTTTTAGCCATGAACGTCTCCGCCGCCGCGGGTGGCATTCATGGCCAACTCACTCATCAGTTCCAGCAACCTAGGGCTGCTGCTGGCGACGATCGCCGAACCATTGATCCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009799 GO:0009908 GO:0009943 GO:0009944 GO:0009954 GO:0009955 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0065001 GO:0070013 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

247

Amino Acids

26.87

Weight (kDa)

8.25

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65620 AT1G65620 AT1G65620 AT1G65620 AT1G65620
fragaria_vesca	FvH4_6g00042 FvH4_6g00042 FvH4_6g00042 FvH4_6g00042
malus_domestica	MD00G1016900.v1.1 MD12G1261100.v1.1
prunus_persica	Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1
pyrus_communis	pycom12g24260 pycom17g24020
rosa_chinensis	RchiOBHm_Chr3g0447371
rosa_laevigata	RLG00000026004
rosa_multiflora	Rmu_ssc0000473.1_g000010
rosa_roxburghii	Rroxscaffold_6G00425570
rosa_rugosa	Rorug02G0600700 Rorug02G0600800
rosa_samantha	Rh3AG001000 Rh3BG000700 Rh3CG000700 Rh3DG000900
rosa_wichuraiana	Rw3G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	3 cut(s)	41, 243, 653
AclI	AACGTT	1 cut(s)	129
AclWI	GGATC	3 cut(s)	239, 318, 725
AcoI	YGGCCR	1 cut(s)	667
AcsI	RAATTY	2 cut(s)	28, 50
AcuI	CTGAAG	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	201
AdeI	CACNNNGTG	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	196, 254
AleI	CACNNNNGTG	1 cut(s)	192
AloI	GAACNNNNNNTCC	1 cut(s)	715
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw26I	GTCTC	3 cut(s)	386, 552, 646
AlwI	GGATC	3 cut(s)	239, 318, 725
AlwNI	CAGNNNCTG	1 cut(s)	352
AoxI	GGCC	3 cut(s)	361, 517, 667
ApeKI	GCWGC	7 cut(s)	258, 355, 401, 404, 410, 701, 704
ApoI	RAATTY	2 cut(s)	28, 50
AspA2I	CCTAGG	1 cut(s)	695
AspLEI	GCGC	2 cut(s)	41, 237
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	106
AvrII	CCTAGG	1 cut(s)	695
BalI	TGGCCA	1 cut(s)	669
BbvI	GCAGC	7 cut(s)	245, 367, 388, 391, 397, 688, 691
BccI	CCATC	3 cut(s)	301, 478, 570
BceAI	ACGGC	3 cut(s)	188, 271, 376
BcgI	CGANNNNNNTGC	3 cut(s)	31, 48, 82
BclI	TGATCA	1 cut(s)	585
BcoDI	GTCTC	3 cut(s)	386, 552, 646
BfaI	CTAG	2 cut(s)	549, 696
BfmI	CTRYAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	360
BglI	GCCNNNNNGGC	1 cut(s)	224
BlnI	CCTAGG	1 cut(s)	695
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmsI	GCATC	3 cut(s)	17, 589, 607
BsaBI	GATNNNNATC	2 cut(s)	488, 584
BsaHI	GRCGYC	1 cut(s)	201
BsaI	GGTCTC	2 cut(s)	386, 552
BsaJI	CCNNGG	3 cut(s)	376, 651, 695
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 254
Bse1I	ACTGG	1 cut(s)	538
Bse8I	GATNNNNATC	2 cut(s)	488, 584
BseDI	CCNNGG	3 cut(s)	376, 651, 695
BseGI	GGATG	1 cut(s)	489
BseJI	GATNNNNATC	2 cut(s)	488, 584
BseLI	CCNNNNNNNGG	2 cut(s)	196, 254
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	3 cut(s)	269, 436, 439
BseXI	GCAGC	7 cut(s)	245, 367, 388, 391, 397, 688, 691
Bsh1236I	CGCG	3 cut(s)	41, 243, 653
Bsh1285I	CGRYCG	1 cut(s)	718
BshFI	GGCC	3 cut(s)	363, 519, 669
BsiEI	CGRYCG	1 cut(s)	718
BsiSI	CCGG	2 cut(s)	104, 603
BslI	CCNNNNNNNGG	2 cut(s)	196, 254
BsmAI	GTCTC	3 cut(s)	386, 552, 646
BsmBI	CGTCTC	1 cut(s)	646
BsmI	GAATGC	1 cut(s)	660
BsnI	GGCC	3 cut(s)	363, 519, 669
Bso31I	GGTCTC	2 cut(s)	386, 552
Bsp143I	GATC	7 cut(s)	244, 310, 523, 553, 585, 715, 730
BspANI	GGCC	3 cut(s)	363, 519, 669
BspFNI	CGCG	3 cut(s)	41, 243, 653
BspMAI	CTGCAG	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	360
BspPI	GGATC	3 cut(s)	239, 318, 725
BspTNI	GGTCTC	2 cut(s)	386, 552
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	3 cut(s)	376, 651, 695
BssMI	GATC	7 cut(s)	244, 310, 523, 553, 585, 715, 730
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	695
Bst4CI	ACNGT	2 cut(s)	380, 441
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	7 cut(s)	46, 71, 151, 299, 373, 622, 709
BstDSI	CCRYGG	2 cut(s)	376, 651
BstF5I	GGATG	1 cut(s)	489
BstFNI	CGCG	3 cut(s)	41, 243, 653
BstHHI	GCGC	2 cut(s)	41, 237
BstKTI	GATC	7 cut(s)	247, 313, 526, 556, 588, 718, 733
BstMAI	GTCTC	3 cut(s)	386, 552, 646
BstMBI	GATC	7 cut(s)	244, 310, 523, 553, 585, 715, 730
BstMCI	CGRYCG	1 cut(s)	718
BstNSI	RCATGY	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	353
BstUI	CGCG	3 cut(s)	41, 243, 653
BstV1I	GCAGC	7 cut(s)	245, 367, 388, 391, 397, 688, 691
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	363, 519, 669
BtgI	CCRYGG	2 cut(s)	376, 651
BtsCI	GGATG	1 cut(s)	489
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
BveI	ACCTGC	1 cut(s)	360
Cac8I	GCNNGC	7 cut(s)	46, 71, 151, 299, 373, 622, 709
CaiI	CAGNNNCTG	1 cut(s)	352
CfoI	GCGC	2 cut(s)	41, 237
Cfr13I	GGNCC	1 cut(s)	106
Cfr42I	CCGCGG	1 cut(s)	654
CseI	GACGC	2 cut(s)	69, 209
CviAII	CATG	4 cut(s)	36, 232, 634, 665
DpnI	GATC	7 cut(s)	246, 312, 525, 555, 587, 717, 732
DpnII	GATC	7 cut(s)	244, 310, 523, 553, 585, 715, 730
DraIII	CACNNNGTG	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	667
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EciI	GGCGGA	3 cut(s)	284, 528, 634
Eco130I	CCWWGG	1 cut(s)	695
Eco31I	GGTCTC	2 cut(s)	386, 552
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	695
Esp3I	CGTCTC	1 cut(s)	646
FaeI	CATG	4 cut(s)	39, 235, 637, 668
FaiI	YATR	5 cut(s)	37, 233, 386, 635, 666
FatI	CATG	4 cut(s)	35, 231, 633, 664
FauI	CCCGC	1 cut(s)	646
FbaI	TGATCA	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	252
FokI	GGATG	1 cut(s)	496
FspBI	CTAG	2 cut(s)	549, 696
GlaI	GCGC	2 cut(s)	40, 236
HaeIII	GGCC	3 cut(s)	363, 519, 669
HapII	CCGG	2 cut(s)	104, 603
HgaI	GACGC	2 cut(s)	69, 209
HhaI	GCGC	2 cut(s)	41, 237
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	39, 235, 637, 668
Hin6I	GCGC	2 cut(s)	39, 235
HinP1I	GCGC	2 cut(s)	39, 235
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	267, 489
HpaII	CCGG	2 cut(s)	104, 603
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	3 cut(s)	133, 208, 253
Hpy188I	TCNGA	3 cut(s)	306, 331, 348
Hpy188III	TCNNGA	2 cut(s)	557, 589
Hpy8I	GTNNAC	3 cut(s)	133, 208, 253
Hpy99I	CGWCG	5 cut(s)	22, 25, 28, 63, 716
HpyCH4III	ACNGT	2 cut(s)	380, 441
HpyCH4IV	ACGT	3 cut(s)	129, 156, 639
HpyCH4V	TGCA	6 cut(s)	48, 89, 125, 181, 355, 620
HpySE526I	ACGT	3 cut(s)	129, 156, 639
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	39, 235, 637, 668
HspAI	GCGC	2 cut(s)	39, 235
Ksp22I	TGATCA	1 cut(s)	585
KspI	CCGCGG	1 cut(s)	654
Kzo9I	GATC	7 cut(s)	244, 310, 523, 553, 585, 715, 730
Lsp1109I	GCAGC	7 cut(s)	245, 367, 388, 391, 397, 688, 691
LweI	GCATC	3 cut(s)	17, 589, 607
MaeI	CTAG	2 cut(s)	549, 696
MaeII	ACGT	3 cut(s)	129, 156, 639
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	7 cut(s)	246, 312, 525, 555, 587, 717, 732
MboI	GATC	7 cut(s)	244, 310, 523, 553, 585, 715, 730
MboII	GAAGA	1 cut(s)	422
MflI	RGATCY	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	3 cut(s)	28, 50, 164
MluNI	TGGCCA	1 cut(s)	669
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	2 cut(s)	244, 307
Mox20I	TGGCCA	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	2 cut(s)	171, 739
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	669
MspA1I	CMGCKG	3 cut(s)	401, 410, 653
MspI	CCGG	2 cut(s)	104, 603
Mva1269I	GAATGC	1 cut(s)	660
MvnI	CGCG	3 cut(s)	41, 243, 653
NdeII	GATC	7 cut(s)	244, 310, 523, 553, 585, 715, 730
NlaIII	CATG	4 cut(s)	39, 235, 637, 668
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	235
OliI	CACNNNNGTG	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	1 cut(s)	660
PfeI	GAWTC	1 cut(s)	489
PflFI	GACNNNGTC	1 cut(s)	203
Ple19I	CGATCG	1 cut(s)	718
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Psp1406I	AACGTT	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	357
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	310
PsyI	GACNNNGTC	1 cut(s)	203
PvuI	CGATCG	1 cut(s)	718
RseI	CAYNNNNRTG	1 cut(s)	192
SacII	CCGCGG	1 cut(s)	654
SaqAI	TTAA	2 cut(s)	171, 739
Sau3AI	GATC	7 cut(s)	244, 310, 523, 553, 585, 715, 730
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	276
SetI	ASST	8 cut(s)	132, 159, 303, 320, 354, 458, 642, 697
SfaNI	GCATC	3 cut(s)	17, 589, 607
SfcI	CTRYAG	1 cut(s)	353
Sfr303I	CCGCGG	1 cut(s)	654
SgrBI	CCGCGG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	3 cut(s)	28, 50, 164
SspMI	CTAG	2 cut(s)	549, 696
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	2 cut(s)	380, 441
TaiI	ACGT	3 cut(s)	132, 159, 642
TaqI	TCGA	2 cut(s)	26, 556
TasI	AATT	3 cut(s)	28, 50, 164
TfiI	GAWTC	1 cut(s)	489
Tru1I	TTAA	2 cut(s)	171, 739
Tru9I	TTAA	2 cut(s)	171, 739
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	7 cut(s)	258, 355, 401, 404, 410, 701, 704
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	3 cut(s)	422, 650, 653
TspRI	CASTG	1 cut(s)	373
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	2 cut(s)	28, 50
XceI	RCATGY	1 cut(s)	235
XmaJI	CCTAGG	1 cut(s)	695
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	2 cut(s)	549, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.