AT1G65840

Polyamine oxidase 4

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
24489758 .. 24493077
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65840.1

Sequence Viewer

Length: 1494 bp
ATGGATAAGAAGAAGAATTCGTTTCCAGATAATCTTCCTGAAGGCACAATCTCTGAGCTTATGCAGAAGCAGAACAATGTGCAGCCTTCTGTTATTGTGATTGGTAGTGGTATATCAGGTCTTGCTGCTGCTAGGAATCTCTCTGAAGCATCTTTCAAGGTGACTGTTCTTGAATCACGCGATAGGATTGGTGGTCGTATCCATACGGATTATTCCTTTGGTTGTCCTGTTGATATGGGAGCTTCATGGTTACATGGAGTCTCTGATGAGAATCCCTTAGCTCCCATTATACGCCGTTTAGGACTGACTTTATACCGAACTAGCGGGGATGACTCCATCTTGTATGATCATGATCTGGAGAGTTATGGACTTTTTGACATGCATGGGAATAAAATTCCGCCGCAGTTGGTTACTAAAGTTGGAGATGCATTCAAGAGAATTCTCGAAGAGACGGAGAAAATAAGGGATGAAACTGCCAATGACATGTCTGTTCTTCAAGGAATATCTATCGTCTTGGATAGAAATCCAGAACTAAGGCAAGAAGGGATGGCGTACGAAGTTTTACAGTGGTACTTATGTAGGATGGAGGCGTGGTTTGCTGTAGATGCGAATTTAATTTCACTAAAATGTTGGGATCAGGATGAATGTCTTTCAGGTGGTCATGGTCTAATGGTGCAGGGTTATGAGCCAGTGATCAGAACAATTGCAAAAGATCTTGATATTCGCTTGAACCATAGGGTTACTAAAGTTGTAAGAACATCTAATAACAAGGTGATAGTCGCAGTTGAAGGCGGAACCAATTTTGTTGCTGATGCTGTTATTATTACGGTTCCAATCGGTGTTCTCAAGGCAAATCTAATTCAATTTGAGCCAGAGCTCCCACAATGGAAAACCTCTGCGATATCGGGTCTCGGTGTAGGCAATGAGAATAAGATTGCCTTGAGATTTGACAGAGCGTTTTGGCCTAATGTGGAGTTCCTCGGGATGGTGGCACCGACTTCTTACGCATGTGGCTATTTTCTGAATCTTCACAAGGCAACAGGCCATCCGGTGCTTGTTTATATGGCTGCAGGGAATCTAGCACAAGACCTCGAAAAGCTATCTGATGAAGCTACAGCAAATTTCGTGATGCTGCAACTTAAGAAAATGTTTCCAGACGCACCTGACCCGGCTCAATATCTAGTGACACGGTGGGGAACGGATCCAAATACATTGGGGTGTTATGCGTATGACGTAGTAGGAATGCCGGAAGATCTGTACCCGAGGCTAGGAGAGCCGGTTGATAATATTTTCTTCGGAGGAGAAGCCGTGAACGTCGAGCATCAAGGATCCGCTCACGGAGCTTTCTTAGCAGGAGTCTCGGCCTCGCAGAATTGTCAAAGGTATATCTTTGAACGACTCGGGGCTTGGGAGAAACTCAAGCTTGTTTCTCTTATGGGGAACAGTGACATTCTCGAAACTGCAACTGTGCCTCTCCAAATCTCCAGGATGTGA

Protein Analysis

497

Amino Acids

54.93

Weight (kDa)

5.15

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 31 - 65 2.6e-07 FAD dependent oxidoreductase
FAD_binding_2 PF00890 31 - 74 2e-06 FAD binding domain
NAD_binding_8 PF13450 33 - 100 1.3e-16 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 38 - 458 9.3e-98 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011767)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 991
AccBSI CCGCTC 1 cut(s) 1334
AccII CGCG 1 cut(s) 180
AciI CCGC 5 cut(s) 324, 398, 401, 792, 1332
AclWI GGATC 5 cut(s) 642, 1196, 1209, 1323, 1336
AcsI RAATTY 5 cut(s) 16, 393, 438, 610, 1120
AcuI CTGAAG 2 cut(s) 60, 165
AfaI GTAC 3 cut(s) 554, 572, 1259
AfiI CCNNNNNNNGG 2 cut(s) 985, 1268
AflII CTTAAG 1 cut(s) 1139
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 8 cut(s) 157, 173, 433, 497, 730, 788, 863, 1394
AjnI CCWGG 1 cut(s) 1484
AluBI AGCT 8 cut(s) 58, 242, 281, 877, 1099, 1112, 1343, 1423
AluI AGCT 8 cut(s) 58, 242, 281, 877, 1099, 1112, 1343, 1423
Alw21I GWGCWC 1 cut(s) 879
Alw26I GTCTC 4 cut(s) 265, 443, 914, 1363
AlwI GGATC 5 cut(s) 642, 1196, 1209, 1323, 1336
Ama87I CYCGRG 3 cut(s) 980, 1261, 1400
AoxI GGCC 3 cut(s) 962, 1042, 1362
ApeKI GCWGC 5 cut(s) 82, 125, 128, 1067, 1132
ApoI RAATTY 5 cut(s) 16, 393, 438, 610, 1120
AsuC2I CCSGG 1 cut(s) 1169
AsuHPI GGTGA 2 cut(s) 172, 784
AvaI CYCGRG 3 cut(s) 980, 1261, 1400
BaeI ACNNNNGTAYC 2 cut(s) 562, 595
BamHI GGATCC 2 cut(s) 1201, 1328
BanI GGYRCC 1 cut(s) 991
BanII GRGCYC 1 cut(s) 879
Bbv12I GWGCWC 1 cut(s) 879
BbvI GCAGC 5 cut(s) 94, 112, 115, 1054, 1119
BccI CCATC 5 cut(s) 344, 541, 577, 979, 1053
BceAI ACGGC 2 cut(s) 279, 1292
BcgI CGANNNNNNTGC 2 cut(s) 1341, 1375
BciT130I CCWGG 1 cut(s) 1486
BciVI GTATCC 1 cut(s) 209
BclI TGATCA 2 cut(s) 346, 693
BcnI CCSGG 1 cut(s) 1169
BcoDI GTCTC 4 cut(s) 265, 443, 914, 1363
BfaI CTAG 5 cut(s) 132, 321, 1079, 1181, 1268
BfmI CTRYAG 3 cut(s) 600, 1068, 1113
BfrI CTTAAG 1 cut(s) 1139
BfuI GTATCC 1 cut(s) 209
BglII AGATCT 2 cut(s) 712, 1252
BisI GCNGC 6 cut(s) 83, 126, 129, 401, 1068, 1133
BlsI GCNGC 6 cut(s) 84, 127, 130, 402, 1069, 1134
Bme1390I CCNGG 2 cut(s) 1169, 1486
BmeT110I CYCGRG 3 cut(s) 980, 1261, 1400
BmiI GGNNCC 5 cut(s) 796, 831, 993, 1203, 1330
BmrFI CCNGG 2 cut(s) 1169, 1486
BmsI GCATC 6 cut(s) 158, 415, 595, 802, 1119, 1330
BpmI CTGGAG 2 cut(s) 377, 1468
Bpu10I CCTNAGC 1 cut(s) 277
BpuEI CTTGAG 3 cut(s) 830, 961, 1403
BpuMI CCSGG 1 cut(s) 1169
BsaBI GATNNNNATC 3 cut(s) 270, 351, 522
BsaI GGTCTC 1 cut(s) 914
BsaJI CCNNGG 2 cut(s) 979, 1262
BsaWI WCCGGW 1 cut(s) 1048
BsaXI ACNNNNNCTCC 6 cut(s) 578, 608, 1263, 1293, 1293, 1323
Bsc4I CCNNNNNNNGG 2 cut(s) 985, 1268
Bse118I RCCGGY 1 cut(s) 1276
Bse1I ACTGG 1 cut(s) 689
Bse3DI GCAATG 1 cut(s) 928
Bse8I GATNNNNATC 3 cut(s) 270, 351, 522
BseBI CCWGG 1 cut(s) 1486
BseDI CCNNGG 2 cut(s) 979, 1262
BseGI GGATG 8 cut(s) 334, 472, 552, 588, 646, 990, 1045, 1494
BseJI GATNNNNATC 3 cut(s) 270, 351, 522
BseLI CCNNNNNNNGG 2 cut(s) 985, 1268
BseMI GCAATG 1 cut(s) 928
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 689
BseRI GAGGAG 1 cut(s) 1314
BseXI GCAGC 5 cut(s) 94, 112, 115, 1054, 1119
BsgI GTGCAG 2 cut(s) 101, 695
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 3 cut(s) 964, 1044, 1364
BshNI GGYRCC 1 cut(s) 991
BsiHKAI GWGCWC 1 cut(s) 879
BsiHKCI CYCGRG 3 cut(s) 980, 1261, 1400
BsiSI CCGG 4 cut(s) 1049, 1169, 1247, 1277
BsiWI CGTACG 1 cut(s) 552
BslI CCNNNNNNNGG 2 cut(s) 985, 1268
BsmAI GTCTC 4 cut(s) 265, 443, 914, 1363
BsmBI CGTCTC 1 cut(s) 443
BsmI GAATGC 2 cut(s) 428, 1248
BsnI GGCC 3 cut(s) 964, 1044, 1364
Bso31I GGTCTC 1 cut(s) 914
BsoBI CYCGRG 3 cut(s) 980, 1261, 1400
Bsp1286I GDGCHC 1 cut(s) 879
Bsp143I GATC 8 cut(s) 346, 352, 634, 693, 712, 1201, 1252, 1328
BspACI CCGC 5 cut(s) 324, 398, 401, 792, 1332
BspANI GGCC 3 cut(s) 964, 1044, 1364
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 180
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 5 cut(s) 796, 831, 993, 1203, 1330
BspMAI CTGCAG 1 cut(s) 1072
BspPI GGATC 5 cut(s) 642, 1196, 1209, 1323, 1336
BspT107I GGYRCC 1 cut(s) 991
BspTI CTTAAG 1 cut(s) 1139
BspTNI GGTCTC 1 cut(s) 914
BsrBI CCGCTC 1 cut(s) 1334
BsrDI GCAATG 1 cut(s) 928
BsrFI RCCGGY 1 cut(s) 1276
BsrI ACTGG 1 cut(s) 689
BssAI RCCGGY 1 cut(s) 1276
BssECI CCNNGG 2 cut(s) 979, 1262
BssMI GATC 8 cut(s) 346, 352, 634, 693, 712, 1201, 1252, 1328
Bst2UI CCWGG 1 cut(s) 1486
Bst4CI ACNGT 6 cut(s) 166, 567, 829, 1191, 1445, 1468
Bst6I CTCTTC 1 cut(s) 441
BstAFI CTTAAG 1 cut(s) 1139
BstDEI CTNAG 4 cut(s) 54, 277, 533, 1348
BstF5I GGATG 8 cut(s) 334, 472, 552, 588, 646, 990, 1045, 1494
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 8 cut(s) 349, 355, 637, 696, 715, 1204, 1255, 1331
BstMAI GTCTC 4 cut(s) 265, 443, 914, 1363
BstMBI GATC 8 cut(s) 346, 352, 634, 693, 712, 1201, 1252, 1328
BstMWI GCNNNNNNNGC 5 cut(s) 596, 605, 1273, 1340, 1349
BstNI CCWGG 1 cut(s) 1486
BstNSI RCATGY 3 cut(s) 382, 487, 1011
BstSCI CCNGG 2 cut(s) 1167, 1484
BstSFI CTRYAG 3 cut(s) 600, 1068, 1113
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 5 cut(s) 94, 112, 115, 1054, 1119
BstX2I RGATCY 4 cut(s) 712, 1201, 1252, 1328
BstYI RGATCY 4 cut(s) 712, 1201, 1252, 1328
BsuI GTATCC 1 cut(s) 209
BsuRI GGCC 3 cut(s) 964, 1044, 1364
BtsCI GGATG 8 cut(s) 334, 472, 552, 588, 646, 990, 1045, 1494
BtsIMutI CAGTG 3 cut(s) 572, 696, 1450
CciI TCATGA 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 1276
CseI GACGC 1 cut(s) 1166
Csp6I GTAC 3 cut(s) 553, 571, 1258
CviAII CATG 8 cut(s) 246, 254, 350, 379, 383, 484, 662, 1008
CviQI GTAC 3 cut(s) 553, 571, 1258
DdeI CTNAG 4 cut(s) 54, 277, 533, 1348
DpnI GATC 8 cut(s) 348, 354, 636, 695, 714, 1203, 1254, 1330
DpnII GATC 8 cut(s) 346, 352, 634, 693, 712, 1201, 1252, 1328
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
EciI GGCGGA 2 cut(s) 387, 807
Ecl136II GAGCTC 1 cut(s) 877
Eco24I GRGCYC 1 cut(s) 879
Eco31I GGTCTC 1 cut(s) 914
Eco32I GATATC 1 cut(s) 903
Eco53kI GAGCTC 1 cut(s) 877
Eco57I CTGAAG 2 cut(s) 60, 165
Eco88I CYCGRG 3 cut(s) 980, 1261, 1400
EcoICRI GAGCTC 1 cut(s) 877
EcoRI GAATTC 2 cut(s) 16, 438
EcoRII CCWGG 1 cut(s) 1484
EcoRV GATATC 1 cut(s) 903
EcoT22I ATGCAT 2 cut(s) 384, 430
EcoT38I GRGCYC 1 cut(s) 879
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 8 cut(s) 249, 257, 353, 382, 386, 487, 665, 1011
FalI AAGNNNNNCTT 2 cut(s) 923, 955
FatI CATG 8 cut(s) 245, 253, 349, 378, 382, 483, 661, 1007
FauI CCCGC 1 cut(s) 317
FbaI TGATCA 2 cut(s) 346, 693
Fnu4HI GCNGC 6 cut(s) 83, 126, 129, 401, 1068, 1133
FokI GGATG 7 cut(s) 341, 479, 559, 595, 653, 997, 1032
FriOI GRGCYC 1 cut(s) 879
Fsp4HI GCNGC 6 cut(s) 83, 126, 129, 401, 1068, 1133
FspBI CTAG 5 cut(s) 132, 321, 1079, 1181, 1268
GluI GCNGC 6 cut(s) 83, 126, 129, 401, 1068, 1133
GsuI CTGGAG 2 cut(s) 377, 1468
HaeIII GGCC 3 cut(s) 964, 1044, 1364
HapII CCGG 4 cut(s) 1049, 1169, 1247, 1277
HgaI GACGC 1 cut(s) 1166
Hin1II CATG 8 cut(s) 249, 257, 353, 382, 386, 487, 665, 1011
HindIII AAGCTT 1 cut(s) 1421
HinfI GANTC 9 cut(s) 136, 173, 258, 271, 332, 1024, 1075, 1356, 1398
HpaII CCGG 4 cut(s) 1049, 1169, 1247, 1277
HphI GGTGA 2 cut(s) 172, 784
Hpy166II GTNNAC 1 cut(s) 1312
Hpy188I TCNGA 7 cut(s) 55, 145, 265, 698, 1023, 1105, 1298
Hpy8I GTNNAC 1 cut(s) 1312
Hpy99I CGWCG 1 cut(s) 1319
HpyAV CCTTC 4 cut(s) 35, 96, 536, 782
HpyCH4III ACNGT 6 cut(s) 166, 567, 829, 1191, 1445, 1468
HpyCH4IV ACGT 2 cut(s) 1233, 1314
HpyCH4V TGCA 9 cut(s) 64, 82, 382, 428, 676, 707, 1070, 1135, 1463
HpyF10VI GCNNNNNNNGC 5 cut(s) 596, 605, 1273, 1340, 1349
HpyF3I CTNAG 4 cut(s) 54, 277, 533, 1348
HpySE526I ACGT 2 cut(s) 1233, 1314
Hsp92II CATG 8 cut(s) 249, 257, 353, 382, 386, 487, 665, 1011
Ksp22I TGATCA 2 cut(s) 346, 693
Kzo9I GATC 8 cut(s) 346, 352, 634, 693, 712, 1201, 1252, 1328
LmnI GCTCC 4 cut(s) 239, 286, 882, 1340
Lsp1109I GCAGC 5 cut(s) 94, 112, 115, 1054, 1119
LweI GCATC 6 cut(s) 158, 415, 595, 802, 1119, 1330
MaeI CTAG 5 cut(s) 132, 321, 1079, 1181, 1268
MaeII ACGT 2 cut(s) 1233, 1314
MaeIII GTNAC 6 cut(s) 160, 249, 409, 739, 1183, 1445
MalI GATC 8 cut(s) 348, 354, 636, 695, 714, 1203, 1254, 1330
MbiI CCGCTC 1 cut(s) 1334
MboI GATC 8 cut(s) 346, 352, 634, 693, 712, 1201, 1252, 1328
MboII GAAGA 8 cut(s) 22, 25, 26, 458, 485, 1019, 1262, 1285
MfeI CAATTG 1 cut(s) 702
MflI RGATCY 4 cut(s) 712, 1201, 1252, 1328
MhlI GDGCHC 1 cut(s) 879
MlyI GAGTC 4 cut(s) 267, 326, 1365, 1392
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 8 cut(s) 580, 904, 989, 1100, 1257, 1292, 1375, 1482
Mph1103I ATGCAT 2 cut(s) 384, 430
MseI TTAA 2 cut(s) 614, 1140
MslI CAYNNNNRTG 2 cut(s) 625, 1216
MspCI CTTAAG 1 cut(s) 1139
MspI CCGG 4 cut(s) 1049, 1169, 1247, 1277
MspR9I CCNGG 2 cut(s) 1169, 1486
MunI CAATTG 1 cut(s) 702
Mva1269I GAATGC 2 cut(s) 428, 1248
MvaI CCWGG 1 cut(s) 1486
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 5 cut(s) 596, 605, 1273, 1340, 1349
NciI CCSGG 1 cut(s) 1169
NdeII GATC 8 cut(s) 346, 352, 634, 693, 712, 1201, 1252, 1328
NlaIII CATG 8 cut(s) 249, 257, 353, 382, 386, 487, 665, 1011
NlaIV GGNNCC 5 cut(s) 796, 831, 993, 1203, 1330
NmeAIII GCCGAG 1 cut(s) 1340
NmuCI GTSAC 3 cut(s) 160, 1183, 1445
NsiI ATGCAT 2 cut(s) 384, 430
NspI RCATGY 3 cut(s) 382, 487, 1011
PagI TCATGA 1 cut(s) 349
PciI ACATGT 1 cut(s) 483
PctI GAATGC 2 cut(s) 428, 1248
PfeI GAWTC 5 cut(s) 136, 173, 271, 1024, 1075
Pfl23II CGTACG 1 cut(s) 552
PfoI TCCNGGA 1 cut(s) 1484
PkrI GCNGC 6 cut(s) 84, 127, 130, 402, 1069, 1134
PleI GAGTC 4 cut(s) 266, 326, 1364, 1392
PpsI GAGTC 4 cut(s) 266, 326, 1364, 1392
PscI ACATGT 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 879
Psp6I CCWGG 1 cut(s) 1484
PspGI CCWGG 1 cut(s) 1484
PspLI CGTACG 1 cut(s) 552
PspN4I GGNNCC 5 cut(s) 796, 831, 993, 1203, 1330
PstI CTGCAG 1 cut(s) 1072
PsuI RGATCY 4 cut(s) 712, 1201, 1252, 1328
RsaI GTAC 3 cut(s) 554, 572, 1259
RsaNI GTAC 3 cut(s) 553, 571, 1258
RseI CAYNNNNRTG 2 cut(s) 625, 1216
SacI GAGCTC 1 cut(s) 879
SaqAI TTAA 2 cut(s) 614, 1140
SatI GCNGC 6 cut(s) 83, 126, 129, 401, 1068, 1133
Sau3AI GATC 8 cut(s) 346, 352, 634, 693, 712, 1201, 1252, 1328
SchI GAGTC 4 cut(s) 267, 326, 1365, 1392
ScrFI CCNGG 2 cut(s) 1169, 1486
SduI GDGCHC 1 cut(s) 879
SfaNI GCATC 6 cut(s) 158, 415, 595, 802, 1119, 1330
SfcI CTRYAG 3 cut(s) 600, 1068, 1113
SmiMI CAYNNNNRTG 2 cut(s) 625, 1216
SmlI CTYRAG 4 cut(s) 845, 940, 1139, 1418
SmoI CTYRAG 4 cut(s) 845, 940, 1139, 1418
SsiI CCGC 5 cut(s) 324, 398, 401, 792, 1332
SspI AATATT 1 cut(s) 1288
SspMI CTAG 5 cut(s) 132, 321, 1079, 1181, 1268
SstI GAGCTC 1 cut(s) 879
StyD4I CCNGG 2 cut(s) 1167, 1484
TaaI ACNGT 6 cut(s) 166, 567, 829, 1191, 1445, 1468
TaiI ACGT 2 cut(s) 1236, 1317
TaqI TCGA 4 cut(s) 444, 1092, 1317, 1455
TauI GCSGC 1 cut(s) 403
TfiI GAWTC 5 cut(s) 136, 173, 271, 1024, 1075
Tru1I TTAA 2 cut(s) 614, 1140
Tru9I TTAA 2 cut(s) 614, 1140
TscAI CASTG 3 cut(s) 572, 696, 1450
TseFI GTSAC 3 cut(s) 160, 1183, 1445
TseI GCWGC 5 cut(s) 82, 125, 128, 1067, 1132
Tsp45I GTSAC 3 cut(s) 160, 1183, 1445
TspDTI ATGAA 4 cut(s) 234, 483, 657, 1122
TspGWI ACGGA 4 cut(s) 221, 467, 1214, 1353
TspRI CASTG 3 cut(s) 572, 696, 1450
Vha464I CTTAAG 1 cut(s) 1139
XapI RAATTY 5 cut(s) 16, 393, 438, 610, 1120
XceI RCATGY 3 cut(s) 382, 487, 1011
XspI CTAG 5 cut(s) 132, 321, 1079, 1181, 1268
Zsp2I ATGCAT 2 cut(s) 384, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.