FvH4_1g27430

Polyamine oxidase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
19115174 .. 19120650
5477 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27430.t1

Sequence Viewer

Length: 1485 bp
ATGGACCCCAAAGATCCGTTCTTTACTGATTTGATTGTGGGCTCAGTTTCCTCTCACATTGAGAGGCAGCACAATGCATTATCATGGCCTTCTGTTATTGTTGTTGGCGGTGGCATATCAGGTGTTGCAGCTGCTCGTGTTCTCCATGACGCTTCGTTTAAGGTGACATTGCTCGAATCACGCGATAGACTTGGTGGCCGGATTCATACCGATTACTCGTTTGGTTGTCCAGTAGATATGGGAGCATCATGGCTACATGGTGTTTGCAATGAAAATCCCTTGGCTCCACTTATACGTCGTCTAGGACTTACTTTATATCGTACTAGCGGCGACAACTCTGTGTTGTATGATCATGATTTGGAAAGCTTTGCGCTTTTCAATATAGACGGCAAACAAGTTCCTCAGCAGATGGTCGTTGAAGTTGGTGACGTATTCAAGAGAATTCTCACCGAGACAGAGAAAGTGAGGAATGAAAATACTGATGACATGTCTGTTCACCAAGCAATATTGATTGTGTTGGATAGGCATCCAGAGCTAAGACAAAAAGGACTCGCTGAATCAGTGTTGCAATGGTACATGTGTCGAATGGAAGCATGGTTTGCTGCAGATGCAGATATGATATCACTGAAAAACTGGGATCAGGAGCATGTTCTCACTGGTGGTCATGGACTTATGGTGGAAGGTTATGATCCCATAATAAAGACTCTTGCAAAAGATATCGATGTGCGATTGAGTCACAGGGTCACAAAGATATCAAATGGTTGTAATAGGGTGATGCTTACAACTGAAGACGGCAGAATCTTCATTGCAGATGCGGTCATCATAACTGTACCTCTAGGGGTTCTTAAAGCCAAGTTGATTGAGTTTGAACCAACCTTACCTGAGTGGAAAATGTCTGCGATTTCTGATCTTGGGGTGGGCAATGAAAATAAAATTGCCTTACGATTTAATAAAGTTTTCTGGCCGAATGTTGAGCTCTTAGGGGTTGTTGCACCTTCTTCTTATGGATGCGCTTATTTTCTTAATCTTCACAAGACAACGGGGCAACCTGTGCTAGTCTATATGTGTGCTGGAAGGTTTGCCTATGACCTTGAACAAGAAGATGATGTTAAAGCTGTTGAATTTGTGACAGAGCAGCTCAAGAAGATGTTACCTGAAGCAACTGATCCAGTTCAATATCTTGTATCACATTGGGGAACAGACCTGAATTCCCTTGGATGTTACTCTTTGGATTTGGTTGGAAAGCCGGCAGATATATACGAGAGGCTCCGAGCACCCTTGGGTAATCTTTTCTTTGGAGGGGAAGCTGTTAGCATGGACCATCAAGGATCTGTACATGGGGCTTATGCAGCTGGAGTAATGGCAGCTGAGAACTGTCAGAATCATCTATTGGAGAAACTTGGTAGATTGGAAAAGTTGCAGCGTGTTTATGCAGGCGATGAAGTGCTCGAAGCAATAGTTCCACTACAAATCTCAAGGATTTGA

Protein Analysis

495

Amino Acids

54.86

Weight (kDa)

5.35

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 32 - 66 9.5e-06 FAD dependent oxidoreductase
FAD_oxidored PF12831 32 - 67 9.4e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 34 - 100 1.2e-14 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 39 - 458 2.6e-84 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011767)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 183
AciI CCGC 3 cut(s) 108, 327, 815
AclWI GGATC 5 cut(s) 8, 645, 683, 1160, 1336
AcoI YGGCCR 2 cut(s) 196, 962
AcsI RAATTY 3 cut(s) 441, 1121, 1207
AcuI CTGAAG 2 cut(s) 807, 1176
AfaI GTAC 4 cut(s) 322, 575, 831, 1335
AflIII ACRYGT 2 cut(s) 486, 576
AgsI TTSAA 7 cut(s) 379, 419, 436, 869, 1094, 1121, 1175
AjuI GAANNNNNNNTTGG 3 cut(s) 34, 1373, 1405
AluBI AGCT 9 cut(s) 131, 366, 535, 976, 1115, 1138, 1307, 1352, 1367
AluI AGCT 9 cut(s) 131, 366, 535, 976, 1115, 1138, 1307, 1352, 1367
Alw21I GWGCWC 3 cut(s) 978, 1276, 1449
Alw26I GTCTC 1 cut(s) 446
AlwI GGATC 5 cut(s) 8, 645, 683, 1160, 1336
AoxI GGCC 3 cut(s) 86, 196, 962
ApeKI GCWGC 8 cut(s) 67, 128, 131, 602, 1135, 1349, 1364, 1420
ApoI RAATTY 3 cut(s) 441, 1121, 1207
AspLEI GCGC 2 cut(s) 373, 1013
AspS9I GGNCC 2 cut(s) 4, 1318
AsuHPI GGTGA 5 cut(s) 175, 437, 439, 488, 784
AvaII GGWCC 2 cut(s) 4, 1318
BaeI ACNNNNGTAYC 2 cut(s) 565, 598
BanII GRGCYC 2 cut(s) 44, 978
BauI CACGAG 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 795
Bbv12I GWGCWC 3 cut(s) 978, 1276, 1449
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 8 cut(s) 79, 118, 140, 589, 1147, 1361, 1376, 1432
BccI CCATC 2 cut(s) 403, 1329
BceAI ACGGC 2 cut(s) 403, 808
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 4 cut(s) 302, 324, 836, 1055
BfmI CTRYAG 1 cut(s) 603
BisI GCNGC 9 cut(s) 68, 129, 132, 328, 603, 1136, 1350, 1365, 1421
BlsI GCNGC 9 cut(s) 69, 130, 133, 329, 604, 1137, 1351, 1366, 1422
Bme18I GGWCC 2 cut(s) 4, 1318
BmgT120I GGNCC 2 cut(s) 4, 1318
BmiI GGNNCC 3 cut(s) 6, 285, 1268
BmrI ACTGGG 1 cut(s) 643
BmsI GCATC 6 cut(s) 254, 535, 598, 765, 802, 998
BmuI ACTGGG 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 795
BpmI CTGGAG 1 cut(s) 1374
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 2 cut(s) 1124, 1459
Bsa29I ATCGAT 1 cut(s) 720
BsaBI GATNNNNATC 1 cut(s) 525
BsaJI CCNNGG 3 cut(s) 279, 1213, 1278
Bse118I RCCGGY 1 cut(s) 1246
Bse1I ACTGG 4 cut(s) 230, 638, 661, 1169
Bse3DI GCAATG 5 cut(s) 167, 274, 575, 804, 928
Bse8I GATNNNNATC 1 cut(s) 525
BseCI ATCGAT 1 cut(s) 720
BseDI CCNNGG 3 cut(s) 279, 1213, 1278
BseGI GGATG 3 cut(s) 526, 1013, 1223
BseJI GATNNNNATC 1 cut(s) 525
BseMI GCAATG 5 cut(s) 167, 274, 575, 804, 928
BseMII CTCAG 4 cut(s) 57, 416, 873, 1359
BseNI ACTGG 4 cut(s) 230, 638, 661, 1169
BseXI GCAGC 8 cut(s) 79, 118, 140, 589, 1147, 1361, 1376, 1432
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 3 cut(s) 88, 198, 964
BshVI ATCGAT 1 cut(s) 720
BsiHKAI GWGCWC 3 cut(s) 978, 1276, 1449
BsiSI CCGG 2 cut(s) 199, 1247
BsmAI GTCTC 1 cut(s) 446
BsnI GGCC 3 cut(s) 88, 198, 964
Bsp1286I GDGCHC 4 cut(s) 44, 978, 1276, 1449
Bsp1407I TGTACA 1 cut(s) 1333
Bsp143I GATC 7 cut(s) 13, 349, 637, 688, 907, 1165, 1328
BspACI CCGC 3 cut(s) 108, 327, 815
BspANI GGCC 3 cut(s) 88, 198, 964
BspCNI CTCAG 4 cut(s) 56, 415, 874, 1360
BspDI ATCGAT 1 cut(s) 720
BspFNI CGCG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 3 cut(s) 6, 285, 1268
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 5 cut(s) 8, 645, 683, 1160, 1336
BsrDI GCAATG 5 cut(s) 167, 274, 575, 804, 928
BsrFI RCCGGY 1 cut(s) 1246
BsrGI TGTACA 1 cut(s) 1333
BsrI ACTGG 4 cut(s) 230, 638, 661, 1169
BssAI RCCGGY 1 cut(s) 1246
BssECI CCNNGG 3 cut(s) 279, 1213, 1278
BssMI GATC 7 cut(s) 13, 349, 637, 688, 907, 1165, 1328
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 3 cut(s) 279, 1213, 1278
Bst2BI CACGAG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 829, 1376
BstAPI GCANNNNNTGC 2 cut(s) 599, 1051
BstAUI TGTACA 1 cut(s) 1333
BstC8I GCNNGC 2 cut(s) 1248, 1435
BstDEI CTNAG 6 cut(s) 43, 402, 536, 882, 979, 1368
BstF5I GGATG 3 cut(s) 526, 1013, 1223
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 2 cut(s) 373, 1013
BstKTI GATC 7 cut(s) 16, 352, 640, 691, 910, 1168, 1331
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 7 cut(s) 13, 349, 637, 688, 907, 1165, 1328
BstMWI GCNNNNNNNGC 5 cut(s) 532, 599, 608, 1051, 1349
BstNSI RCATGY 3 cut(s) 490, 580, 650
BstSFI CTRYAG 1 cut(s) 603
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 8 cut(s) 79, 118, 140, 589, 1147, 1361, 1376, 1432
BstV2I GAAGAC 1 cut(s) 795
BstX2I RGATCY 2 cut(s) 13, 1328
BstYI RGATCY 2 cut(s) 13, 1328
Bsu15I ATCGAT 1 cut(s) 720
BsuRI GGCC 3 cut(s) 88, 198, 964
BsuTUI ATCGAT 1 cut(s) 720
BtgZI GCGATG 1 cut(s) 1452
BtsCI GGATG 3 cut(s) 526, 1013, 1223
BtsIMutI CAGTG 3 cut(s) 567, 623, 654
Cac8I GCNNGC 2 cut(s) 1248, 1435
CciI TCATGA 1 cut(s) 352
CfoI GCGC 2 cut(s) 373, 1013
Cfr10I RCCGGY 1 cut(s) 1246
Cfr13I GGNCC 2 cut(s) 4, 1318
ClaI ATCGAT 1 cut(s) 720
CseI GACGC 1 cut(s) 158
Csp6I GTAC 4 cut(s) 321, 574, 830, 1334
CviQI GTAC 4 cut(s) 321, 574, 830, 1334
DdeI CTNAG 6 cut(s) 43, 402, 536, 882, 979, 1368
DpnI GATC 7 cut(s) 15, 351, 639, 690, 909, 1167, 1330
DpnII GATC 7 cut(s) 13, 349, 637, 688, 907, 1165, 1328
EaeI YGGCCR 2 cut(s) 196, 962
Ecl136II GAGCTC 1 cut(s) 976
Eco130I CCWWGG 3 cut(s) 279, 1213, 1278
Eco24I GRGCYC 2 cut(s) 44, 978
Eco32I GATATC 3 cut(s) 621, 718, 753
Eco47I GGWCC 2 cut(s) 4, 1318
Eco53kI GAGCTC 1 cut(s) 976
Eco57I CTGAAG 2 cut(s) 807, 1176
EcoICRI GAGCTC 1 cut(s) 976
EcoRI GAATTC 2 cut(s) 441, 1207
EcoRV GATATC 3 cut(s) 621, 718, 753
EcoT14I CCWWGG 3 cut(s) 279, 1213, 1278
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 2 cut(s) 44, 978
ErhI CCWWGG 3 cut(s) 279, 1213, 1278
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 9 cut(s) 68, 129, 132, 328, 603, 1136, 1350, 1365, 1421
FokI GGATG 3 cut(s) 513, 1020, 1230
FriOI GRGCYC 2 cut(s) 44, 978
Fsp4HI GCNGC 9 cut(s) 68, 129, 132, 328, 603, 1136, 1350, 1365, 1421
FspBI CTAG 4 cut(s) 302, 324, 836, 1055
GlaI GCGC 2 cut(s) 372, 1012
GluI GCNGC 9 cut(s) 68, 129, 132, 328, 603, 1136, 1350, 1365, 1421
GsuI CTGGAG 1 cut(s) 1374
HaeIII GGCC 3 cut(s) 88, 198, 964
HapII CCGG 2 cut(s) 199, 1247
HgaI GACGC 1 cut(s) 158
HhaI GCGC 2 cut(s) 373, 1013
Hin6I GCGC 2 cut(s) 371, 1011
HinP1I GCGC 2 cut(s) 371, 1011
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 8 cut(s) 176, 202, 549, 557, 703, 733, 798, 1381
HpaII CCGG 2 cut(s) 199, 1247
HphI GGTGA 5 cut(s) 175, 437, 439, 488, 784
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 3 cut(s) 907, 1271, 1380
Hpy188III TCNNGA 5 cut(s) 353, 436, 530, 641, 1141
Hpy8I GTNNAC 1 cut(s) 496
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 4 cut(s) 99, 674, 1005, 1068
HpyCH4III ACNGT 2 cut(s) 829, 1376
HpyCH4IV ACGT 2 cut(s) 295, 429
HpyF10VI GCNNNNNNNGC 5 cut(s) 532, 599, 608, 1051, 1349
HpyF3I CTNAG 6 cut(s) 43, 402, 536, 882, 979, 1368
HpySE526I ACGT 2 cut(s) 295, 429
HspAI GCGC 2 cut(s) 371, 1011
KroI GCCGGC 1 cut(s) 1246
KroNI GCCGGC 1 cut(s) 1248
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 7 cut(s) 13, 349, 637, 688, 907, 1165, 1328
LmnI GCTCC 4 cut(s) 242, 289, 643, 1272
Lsp1109I GCAGC 8 cut(s) 79, 118, 140, 589, 1147, 1361, 1376, 1432
LweI GCATC 6 cut(s) 254, 535, 598, 765, 802, 998
MaeI CTAG 4 cut(s) 302, 324, 836, 1055
MaeII ACGT 2 cut(s) 295, 429
MaeIII GTNAC 7 cut(s) 163, 425, 734, 742, 1126, 1149, 1220
MalI GATC 7 cut(s) 15, 351, 639, 690, 909, 1167, 1330
MboI GATC 7 cut(s) 13, 349, 637, 688, 907, 1165, 1328
MboII GAAGA 6 cut(s) 793, 800, 990, 1019, 1112, 1156
MflI RGATCY 2 cut(s) 13, 1328
MhlI GDGCHC 4 cut(s) 44, 978, 1276, 1449
MluCI AATT 4 cut(s) 441, 933, 1121, 1207
MlyI GAGTC 3 cut(s) 543, 697, 742
MmeI TCCRAC 2 cut(s) 498, 1219
MnlI CCTC 7 cut(s) 57, 61, 411, 459, 843, 1257, 1292
Mph1103I ATGCAT 1 cut(s) 79
MroNI GCCGGC 1 cut(s) 1246
MseI TTAA 5 cut(s) 159, 846, 948, 1023, 1110
MslI CAYNNNNRTG 1 cut(s) 82
MspA1I CMGCKG 3 cut(s) 131, 1352, 1367
MspI CCGG 2 cut(s) 199, 1247
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 5 cut(s) 532, 599, 608, 1051, 1349
NaeI GCCGGC 1 cut(s) 1248
NdeII GATC 7 cut(s) 13, 349, 637, 688, 907, 1165, 1328
NgoMIV GCCGGC 1 cut(s) 1246
NlaIV GGNNCC 3 cut(s) 6, 285, 1268
NmuCI GTSAC 5 cut(s) 163, 425, 734, 742, 1126
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 3 cut(s) 490, 580, 650
PagI TCATGA 1 cut(s) 352
PciI ACATGT 2 cut(s) 486, 576
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PdiI GCCGGC 1 cut(s) 1248
PfeI GAWTC 5 cut(s) 176, 202, 557, 798, 1381
PkrI GCNGC 9 cut(s) 69, 130, 133, 329, 604, 1137, 1351, 1366, 1422
PleI GAGTC 3 cut(s) 543, 697, 741
PpsI GAGTC 3 cut(s) 543, 697, 741
PscI ACATGT 2 cut(s) 486, 576
Psp124BI GAGCTC 1 cut(s) 978
PspN4I GGNNCC 3 cut(s) 6, 285, 1268
PspPI GGNCC 2 cut(s) 4, 1318
PsrI GAACNNNNNNTAC 2 cut(s) 861, 893
PstI CTGCAG 1 cut(s) 607
PsuI RGATCY 2 cut(s) 13, 1328
PvuII CAGCTG 3 cut(s) 131, 1352, 1367
RsaI GTAC 4 cut(s) 322, 575, 831, 1335
RsaNI GTAC 4 cut(s) 321, 574, 830, 1334
RseI CAYNNNNRTG 1 cut(s) 82
SacI GAGCTC 1 cut(s) 978
SaqAI TTAA 5 cut(s) 159, 846, 948, 1023, 1110
SatI GCNGC 9 cut(s) 68, 129, 132, 328, 603, 1136, 1350, 1365, 1421
Sau3AI GATC 7 cut(s) 13, 349, 637, 688, 907, 1165, 1328
Sau96I GGNCC 2 cut(s) 4, 1318
SchI GAGTC 3 cut(s) 543, 697, 742
SduI GDGCHC 4 cut(s) 44, 978, 1276, 1449
SfaNI GCATC 6 cut(s) 254, 535, 598, 765, 802, 998
SfcI CTRYAG 1 cut(s) 603
SinI GGWCC 2 cut(s) 4, 1318
SmiMI CAYNNNNRTG 1 cut(s) 82
SmlI CTYRAG 2 cut(s) 1139, 1474
SmoI CTYRAG 2 cut(s) 1139, 1474
Sse9I AATT 4 cut(s) 441, 933, 1121, 1207
SsiI CCGC 3 cut(s) 108, 327, 815
SspI AATATT 1 cut(s) 507
SspMI CTAG 4 cut(s) 302, 324, 836, 1055
SstI GAGCTC 1 cut(s) 978
StyI CCWWGG 3 cut(s) 279, 1213, 1278
TaaI ACNGT 2 cut(s) 829, 1376
TaiI ACGT 2 cut(s) 298, 432
TaqI TCGA 4 cut(s) 174, 583, 720, 1449
TasI AATT 4 cut(s) 441, 933, 1121, 1207
TatI WGTACW 1 cut(s) 1333
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 5 cut(s) 176, 202, 557, 798, 1381
Tru1I TTAA 5 cut(s) 159, 846, 948, 1023, 1110
Tru9I TTAA 5 cut(s) 159, 846, 948, 1023, 1110
TscAI CASTG 3 cut(s) 567, 630, 661
TseFI GTSAC 5 cut(s) 163, 425, 734, 742, 1126
TseI GCWGC 8 cut(s) 67, 128, 131, 602, 1135, 1349, 1364, 1420
Tsp45I GTSAC 5 cut(s) 163, 425, 734, 742, 1126
TspDTI ATGAA 6 cut(s) 194, 285, 486, 793, 939, 1455
TspGWI ACGGA 1 cut(s) 6
TspRI CASTG 3 cut(s) 567, 630, 661
VpaK11BI GGWCC 2 cut(s) 4, 1318
XapI RAATTY 3 cut(s) 441, 1121, 1207
XceI RCATGY 3 cut(s) 490, 580, 650
XspI CTAG 4 cut(s) 302, 324, 836, 1055
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.